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Cow genome map

           
Conread name:
           
Ss1.1-rspl28_h4.5
        

               
Conread position:
               
283-1089
               

               
Cow position:
               
chr1:68146537-68145730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
808
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
771, 0
               

               
Conread position:
               
772-1123
               

               
Cow position:
               
chr1:95474963-95474625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
323, 7
               

               
Conread position:
               
777-1069
               

               
Cow position:
               
chr1:81328461-81328761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
124, 180
               

               
Conread position:
               
777-1094
               

               
Cow position:
               
chr1:3339589-3339913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 175
               

               
Conread position:
               
780-1089
               

               
Cow position:
               
chr1:13271452-13271141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
30, 35
               

               
Conread position:
               
781-1084
               

               
Cow position:
               
chr1:67078892-67078588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
276, 0
               

               
Conread position:
               
782-993
               

               
Cow position:
               
chr1:85825595-85825806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
138, 128
               

               
Conread position:
               
782-1001
               

               
Cow position:
               
chr1:36527861-36528080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
28, 33
               

               
Conread position:
               
782-1012
               

               
Cow position:
               
chr1:20378601-20378831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
145, 18
               

               
Conread position:
               
782-1018
               

               
Cow position:
               
chr1:69212026-69211792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
28, 33
               

               
Conread position:
               
782-1034
               

               
Cow position:
               
chr1:57397414-57397159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
144, 0
               

               
Conread position:
               
782-1048
               

               
Cow position:
               
chr1:40533137-40532873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 0
               

               
Conread position:
               
782-1065
               

               
Cow position:
               
chr1:41780131-41779858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
158, 0
               

               
Conread position:
               
782-1083
               

               
Cow position:
               
chr1:81357710-81357421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
782-1084
               

               
Cow position:
               
chr1:28251307-28251608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
243, 58
               

               
Conread position:
               
782-1084
               

               
Cow position:
               
chr1:49267816-49268119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
272, 0
               

               
Conread position:
               
782-1084
               

               
Cow position:
               
chr1:56169895-56170196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
270, 44
               

               
Conread position:
               
782-1089
               

               
Cow position:
               
chr1:8471226-8470921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
272, 125
               

               
Conread position:
               
782-1089
               

               
Cow position:
               
chr1:10006044-10005741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
275, 101
               

               
Conread position:
               
782-1089
               

               
Cow position:
               
chr1:21090383-21090706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
207, 0
               

               
Conread position:
               
782-1089
               

               
Cow position:
               
chr1:21431369-21431067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
179, 75
               

               
Conread position:
               
782-1089
               

               
Cow position:
               
chr1:26573279-26572971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
27, 33
               

               
Conread position:
               
782-1089
               

               
Cow position:
               
chr1:58196112-58195820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
276, 108
               

               
Conread position:
               
782-1089
               

               
Cow position:
               
chr1:66504663-66504967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
72, 139
               

               
Conread position:
               
782-1089
               

               
Cow position:
               
chr1:78587524-78587217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
272, 18
               

               
Conread position:
               
782-1089
               

               
Cow position:
               
chr1:82909896-82909590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
272, 236
               

               
Conread position:
               
782-1089
               

               
Cow position:
               
chr1:91901952-91902260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
275, 0
               

               
Conread position:
               
782-1108
               

               
Cow position:
               
chr1:65735060-65734747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
125, 80
               

               
Conread position:
               
782-1108
               

               
Cow position:
               
chr1:74881411-74881094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
28, 33
               

               
Conread position:
               
782-1113
               

               
Cow position:
               
chr1:42771845-42771517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
21, 16
               

               
Conread position:
               
783-905
               

               
Cow position:
               
chr1:55328485-55328361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
783-908
               

               
Cow position:
               
chr1:11289671-11289546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
783-908
               

               
Cow position:
               
chr1:29608165-29608040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
783-908
               

               
Cow position:
               
chr1:88676419-88676543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
783-938
               

               
Cow position:
               
chr1:6212175-6212330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
783-939
               

               
Cow position:
               
chr1:83170574-83170731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
138, 130
               

               
Conread position:
               
783-944
               

               
Cow position:
               
chr1:37677222-37677063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
117, 0
               

               
Conread position:
               
783-949
               

               
Cow position:
               
chr1:70416935-70416772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
87, 44
               

               
Conread position:
               
783-952
               

               
Cow position:
               
chr1:6164897-6165067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
164, 124
               

               
Conread position:
               
783-959
               

               
Cow position:
               
chr1:81305711-81305887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
138, 124
               

               
Conread position:
               
783-961
               

               
Cow position:
               
chr1:27310122-27309941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
783-965
               

               
Cow position:
               
chr1:13579816-13579633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
19, 13
               

               
Conread position:
               
783-968
               

               
Cow position:
               
chr1:34532983-34533168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
783-968
               

               
Cow position:
               
chr1:82090848-82091033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
10, 18
               

               
Conread position:
               
783-972
               

               
Cow position:
               
chr1:99989440-99989630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
783-974
               

               
Cow position:
               
chr1:23658360-23658550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
42, 17
               

               
Conread position:
               
783-977
               

               
Cow position:
               
chr1:47162718-47162911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
138, 0
               

               
Conread position:
               
783-979
               

               
Cow position:
               
chr1:31400472-31400277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
783-993
               

               
Cow position:
               
chr1:17175702-17175493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
108, 0
               

               
Conread position:
               
783-993
               

               
Cow position:
               
chr1:22346593-22346801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
14, 43
               

               
Conread position:
               
783-996
               

               
Cow position:
               
chr1:100340977-100340762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
29, 22
               

               
Conread position:
               
783-1001
               

               
Cow position:
               
chr1:75832969-75833192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
783-1002
               

               
Cow position:
               
chr1:39546716-39546937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
101, 194
               

               
Conread position:
               
783-1003
               

               
Cow position:
               
chr1:23969874-23969656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
167, 0
               

               
Conread position:
               
783-1003
               

               
Cow position:
               
chr1:99016089-99015870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
783-1004
               

               
Cow position:
               
chr1:42054596-42054372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
60, 84
               

               
Conread position:
               
783-1006
               

               
Cow position:
               
chr1:39481000-39480781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
783-1011
               

               
Cow position:
               
chr1:4336162-4336383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
135, 146
               

               
Conread position:
               
783-1014
               

               
Cow position:
               
chr1:40577873-40578107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
783-1016
               

               
Cow position:
               
chr1:17949416-17949648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
185, 0
               

               
Conread position:
               
783-1016
               

               
Cow position:
               
chr1:29948885-29948657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
783-1016
               

               
Cow position:
               
chr1:73434391-73434158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
783-1026
               

               
Cow position:
               
chr1:68093591-68093830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
783-1031
               

               
Cow position:
               
chr1:74303427-74303182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
115, 55
               

               
Conread position:
               
783-1033
               

               
Cow position:
               
chr1:7299958-7300207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
213, 0
               

               
Conread position:
               
783-1034
               

               
Cow position:
               
chr1:24203714-24203477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
783-1034
               

               
Cow position:
               
chr1:70863973-70864223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
181, 205
               

               
Conread position:
               
783-1035
               

               
Cow position:
               
chr1:14361537-14361285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
783-1035
               

               
Cow position:
               
chr1:22222958-22223210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
783-1035
               

               
Cow position:
               
chr1:33899201-33899442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
176, 0
               

               
Conread position:
               
783-1038
               

               
Cow position:
               
chr1:51393027-51393282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
783-1041
               

               
Cow position:
               
chr1:31597143-31597400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
201, 0
               

               
Conread position:
               
783-1047
               

               
Cow position:
               
chr1:76849846-76849583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
253, 148
               

               
Conread position:
               
783-1048
               

               
Cow position:
               
chr1:69246759-69247016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
138, 10
               

               
Conread position:
               
783-1048
               

               
Cow position:
               
chr1:79454032-79453767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
783-1051
               

               
Cow position:
               
chr1:86506691-86506418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
150, 182
               

               
Conread position:
               
783-1055
               

               
Cow position:
               
chr1:100912077-100912349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
783-1060
               

               
Cow position:
               
chr1:30037634-30037909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
71, 121
               

               
Conread position:
               
783-1060
               

               
Cow position:
               
chr1:67005815-67006096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
247, 132
               

               
Conread position:
               
783-1063
               

               
Cow position:
               
chr1:79335245-79334964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
783-1065
               

               
Cow position:
               
chr1:16573974-16573693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
157, 150
               

               
Conread position:
               
783-1069
               

               
Cow position:
               
chr1:18195558-18195833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
69, 113
               

               
Conread position:
               
783-1069
               

               
Cow position:
               
chr1:33443227-33442946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
41, 56
               

               
Conread position:
               
783-1072
               

               
Cow position:
               
chr1:86326955-86326651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
20, 92
               

               
Conread position:
               
783-1076
               

               
Cow position:
               
chr1:16798160-16797868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 21
               

               
Conread position:
               
783-1076
               

               
Cow position:
               
chr1:28414277-28413988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
258, 15
               

               
Conread position:
               
783-1077
               

               
Cow position:
               
chr1:7837814-7837523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
271, 42
               

               
Conread position:
               
783-1077
               

               
Cow position:
               
chr1:11666628-11666333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
271, 0
               

               
Conread position:
               
783-1077
               

               
Cow position:
               
chr1:14529522-14529229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
272, 18
               

               
Conread position:
               
783-1077
               

               
Cow position:
               
chr1:25552741-25553036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 69
               

               
Conread position:
               
783-1077
               

               
Cow position:
               
chr1:31392359-31392064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
271, 0
               

               
Conread position:
               
783-1077
               

               
Cow position:
               
chr1:39889073-39889368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
271, 0
               

               
Conread position:
               
783-1077
               

               
Cow position:
               
chr1:56726103-56726394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
274, 108
               

               
Conread position:
               
783-1077
               

               
Cow position:
               
chr1:57970656-57970368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
275, 85
               

               
Conread position:
               
783-1077
               

               
Cow position:
               
chr1:60251492-60251197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
271, 0
               

               
Conread position:
               
783-1077
               

               
Cow position:
               
chr1:71794467-71794762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
271, 0
               

               
Conread position:
               
783-1077
               

               
Cow position:
               
chr1:84446615-84446908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
271, 36
               

               
Conread position:
               
783-1077
               

               
Cow position:
               
chr1:92279857-92279564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
270, 12
               

               
Conread position:
               
783-1080
               

               
Cow position:
               
chr1:44701842-44701550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
271, 47
               

               
Conread position:
               
783-1080
               

               
Cow position:
               
chr1:57570771-57571064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
274, 42
               

               
Conread position:
               
783-1080
               

               
Cow position:
               
chr1:93112438-93112135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 244
               

               
Conread position:
               
783-1082
               

               
Cow position:
               
chr1:13251585-13251281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
783-1082
               

               
Cow position:
               
chr1:81342461-81342772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
130, 0
               

               
Conread position:
               
783-1083
               

               
Cow position:
               
chr1:8827955-8828256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
273, 0
               

               
Conread position:
               
783-1083
               

               
Cow position:
               
chr1:22481726-22481425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
271, 0
               

               
Conread position:
               
783-1083
               

               
Cow position:
               
chr1:57659553-57659856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
274, 0
               

               
Conread position:
               
783-1084
               

               
Cow position:
               
chr1:5492072-5492362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
271, 124
               

               
Conread position:
               
783-1084
               

               
Cow position:
               
chr1:11199697-11199394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
216, 0
               

               
Conread position:
               
783-1084
               

               
Cow position:
               
chr1:11324448-11324744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
33, 17
               

               
Conread position:
               
783-1084
               

               
Cow position:
               
chr1:17938818-17938516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
138, 149
               

               
Conread position:
               
783-1084
               

               
Cow position:
               
chr1:20867669-20867369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
273, 55
               

               
Conread position:
               
783-1084
               

               
Cow position:
               
chr1:24441114-24440823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 168
               

               
Conread position:
               
783-1084
               

               
Cow position:
               
chr1:31191480-31191188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
271, 47
               

               
Conread position:
               
783-1084
               

               
Cow position:
               
chr1:33715891-33716196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
783-1084
               

               
Cow position:
               
chr1:39111620-39111921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
272, 185
               

               
Conread position:
               
783-1084
               

               
Cow position:
               
chr1:46613358-46613060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 18
               

               
Conread position:
               
783-1084
               

               
Cow position:
               
chr1:55779806-55780107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
783-1084
               

               
Cow position:
               
chr1:59483929-59483627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
271, 0
               

               
Conread position:
               
783-1084
               

               
Cow position:
               
chr1:62731737-62732036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 55
               

               
Conread position:
               
783-1084
               

               
Cow position:
               
chr1:72086530-72086835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 0
               

               
Conread position:
               
783-1084
               

               
Cow position:
               
chr1:89111766-89112068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
274, 0
               

               
Conread position:
               
783-1084
               

               
Cow position:
               
chr1:94662588-94662889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
274, 111
               

               
Conread position:
               
783-1084
               

               
Cow position:
               
chr1:100420539-100420834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 0
               

               
Conread position:
               
783-1084
               

               
Cow position:
               
chr1:102431805-102431503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 149
               

               
Conread position:
               
783-1089
               

               
Cow position:
               
chr1:3383380-3383076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
274, 47
               

               
Conread position:
               
783-1089
               

               
Cow position:
               
chr1:4208979-4208672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
272, 0
               

               
Conread position:
               
783-1089
               

               
Cow position:
               
chr1:7196285-7195978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
271, 0
               

               
Conread position:
               
783-1089
               

               
Cow position:
               
chr1:8556620-8556927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
271, 0
               

               
Conread position:
               
783-1089
               

               
Cow position:
               
chr1:8745432-8745738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
783-1089
               

               
Cow position:
               
chr1:9263171-9262864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
271, 0
               

               
Conread position:
               
783-1089
               

               
Cow position:
               
chr1:9377555-9377238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 0
               

               
Conread position:
               
783-1089
               

               
Cow position:
               
chr1:10725558-10725865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
275, 0
               

               
Conread position:
               
783-1089
               

               
Cow position:
               
chr1:11018378-11018676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
275, 83
               

               
Conread position:
               
783-1089
               

               
Cow position:
               
chr1:11771855-11771549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
274, 242
               

               
Conread position:
               
783-1089
               

               
Cow position:
               
chr1:12058586-12058279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
274, 0
               

               
Conread position:
               
783-1089
               

               
Cow position:
               
chr1:13405451-13405144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
272, 0
               

               
Conread position:
               
783-1089
               

               
Cow position:
               
chr1:15149709-15149402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
271, 0
               

               
Conread position:
               
783-1089
               

               
Cow position:
               
chr1:17436740-17436434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
271, 221
               

               
Conread position:
               
783-1089
               

               
Cow position:
               
chr1:18087363-18087670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
271, 0
               

               
Conread position:
               
783-1089
               

               
Cow position:
               
chr1:18487243-18486936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
271, 0
               

               
Conread position:
               
783-1089
               

               
Cow position:
               
chr1:18962795-18962490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
271, 109
               

               
Conread position:
               
783-1089
               

               
Cow position:
               
chr1:20527095-20527401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
271, 17
               

               
Conread position:
               
783-1089
               

               
Cow position:
               
chr1:20648374-20648681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
271, 0
               

               
Conread position:
               
783-1089
               

               
Cow position:
               
chr1:20831816-20832123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
271, 0
               

               
Conread position:
               
783-1089
               

               
Cow position:
               
chr1:21134173-21133866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
271, 0
               

               
Conread position:
               
783-1089
               

               
Cow position:
               
chr1:21377624-21377317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
274, 0
               

               
Conread position:
               
783-1089
               

               
Cow position:
               
chr1:22529864-22529567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
271, 56
               

               
Conread position:
               
783-1089
               

               
Cow position:
               
chr1:23040030-23040335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 184
               

               
Conread position:
               
783-1089
               

               
Cow position:
               
chr1:23578870-23578563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
13, 18
               

               
Conread position:
               
783-1089
               

               
Cow position:
               
chr1:24654772-24655073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
271, 19
               

               
Conread position:
               
783-1089
               

               
Cow position:
               
chr1:25088738-25088431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
267, 0
               

               
Conread position:
               
783-1089
               

               
Cow position:
               
chr1:26587885-26588191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
271, 254
               

               
Conread position:
               
783-1089
               

               
Cow position:
               
chr1:26607630-26607324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
271, 20
               

               
Conread position:
               
783-1089
               

               
Cow position:
               
chr1:28713973-28714280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
271, 0
               

               
Conread position:
               
783-1089
               

               
Cow position:
               
chr1:28812308-28812001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
271, 0
               

               
Conread position:
               
783-1089
               

               
Cow position:
               
chr1:28876026-28876338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 18
               

               
Conread position:
               
783-1089
               

               
Cow position:
               
chr1:29037476-29037781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
275, 0
               

               
Conread position:
               
783-1089
               

               
Cow position:
               
chr1:29902250-29901947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
211, 110
               

               
Conread position:
               
783-1089
               

               
Cow position:
               
chr1:30065313-30065619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 89
               

               
Conread position:
               
783-1089
               

               
Cow position:
               
chr1:30078877-30079184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
274, 0
               

               
Conread position:
               
783-1089
               

               
Cow position:
               
chr1:31106459-31106152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
271, 0
               

               
Conread position:
               
783-1089
               

               
Cow position:
               
chr1:31351830-31351525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
271, 45
               

               
Conread position:
               
783-1089
               

               
Cow position:
               
chr1:32564993-32564690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
274, 120
               

               
Conread position:
               
783-1089
               

               
Cow position:
               
chr1:32961566-32961262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
271, 143
               

               
Conread position:
               
783-1089
               

               
Cow position:
               
chr1:33040098-33039791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 18
               

               
Conread position:
               
783-1089
               

               
Cow position:
               
chr1:33548465-33548160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 227
               

               
Conread position:
               
783-1089
               

               
Cow position:
               
chr1:33854216-33854508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
271, 178
               

               
Conread position:
               
783-1089
               

               
Cow position:
               
chr1:35598870-35598569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
271, 61
               

               
Conread position:
               
783-1089
               

               
Cow position:
               
chr1:38478239-38478546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
274, 0
               

               
Conread position:
               
783-1089
               

               
Cow position:
               
chr1:38711646-38711953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
259, 290
               

               
Conread position:
               
783-1089
               

               
Cow position:
               
chr1:40058039-40058346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
271, 0
               

               
Conread position:
               
783-1089
               

               
Cow position:
               
chr1:40510323-40510019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 206
               

               
Conread position:
               
783-1089
               

               
Cow position:
               
chr1:40681796-40681490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
271, 13
               

               
Conread position:
               
783-1089
               

               
Cow position:
               
chr1:40920075-40920379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
271, 177
               

               
Conread position:
               
783-1089
               

               
Cow position:
               
chr1:41517893-41517591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
131, 86
               

               
Conread position:
               
783-1089
               

               
Cow position:
               
chr1:42739347-42739648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
274, 29
               

               
Conread position:
               
783-1089
               

               
Cow position:
               
chr1:48249649-48249956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
271, 0
               

               
Conread position:
               
783-1089
               

               
Cow position:
               
chr1:48345119-48345426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
271, 0
               

               
Conread position:
               
783-1089
               

               
Cow position:
               
chr1:48811259-48810953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 18
               

               
Conread position:
               
783-1089
               

               
Cow position:
               
chr1:51875867-51875572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
178, 80
               

               
Conread position:
               
783-1089
               

               
Cow position:
               
chr1:52171875-52171567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
142, 0
               

               
Conread position:
               
783-1089
               

               
Cow position:
               
chr1:53309721-53309416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 42
               

               
Conread position:
               
783-1089
               

               
Cow position:
               
chr1:53647224-53647521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
783-1089
               

               
Cow position:
               
chr1:54116186-54116489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
270, 32
               

               
Conread position:
               
783-1089
               

               
Cow position:
               
chr1:55144979-55145286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
271, 0
               

               
Conread position:
               
783-1089
               

               
Cow position:
               
chr1:56141419-56141112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
274, 0
               

               
Conread position:
               
783-1089
               

               
Cow position:
               
chr1:56205876-56205569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
274, 0
               

               
Conread position:
               
783-1089
               

               
Cow position:
               
chr1:56424845-56425154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
223, 279
               

               
Conread position:
               
783-1089
               

               
Cow position:
               
chr1:56439476-56439172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
170, 127
               

               
Conread position:
               
783-1089
               

               
Cow position:
               
chr1:56644947-56644637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 275
               

               
Conread position:
               
783-1089
               

               
Cow position:
               
chr1:57363397-57363092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
783-1089
               

               
Cow position:
               
chr1:57679429-57679116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
35, 290
               

               
Conread position:
               
783-1089
               

               
Cow position:
               
chr1:57694712-57694408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
783-1089
               

               
Cow position:
               
chr1:58169484-58169198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
136, 87
               

               
Conread position:
               
783-1089
               

               
Cow position:
               
chr1:58171674-58171979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
269, 155
               

               
Conread position:
               
783-1089
               

               
Cow position:
               
chr1:59203329-59203022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
275, 0
               

               
Conread position:
               
783-1089
               

               
Cow position:
               
chr1:60341985-60342297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
233, 0
               

               
Conread position:
               
783-1089
               

               
Cow position:
               
chr1:61096432-61096740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
210, 92
               

               
Conread position:
               
783-1089
               

               
Cow position:
               
chr1:61203318-61203625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 79
               

               
Conread position:
               
783-1089
               

               
Cow position:
               
chr1:61332028-61331722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
783-1089
               

               
Cow position:
               
chr1:61340386-61340079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
271, 0
               

               
Conread position:
               
783-1089
               

               
Cow position:
               
chr1:61747223-61746927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
783-1089
               

               
Cow position:
               
chr1:63035553-63035863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 88
               

               
Conread position:
               
783-1089
               

               
Cow position:
               
chr1:63045215-63044908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
271, 0
               

               
Conread position:
               
783-1089
               

               
Cow position:
               
chr1:63045819-63046126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
271, 0
               

               
Conread position:
               
783-1089
               

               
Cow position:
               
chr1:63048513-63048820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
274, 0
               

               
Conread position:
               
783-1089
               

               
Cow position:
               
chr1:63341538-63341231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
271, 0
               

               
Conread position:
               
783-1089
               

               
Cow position:
               
chr1:63602850-63602548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
274, 109
               

               
Conread position:
               
783-1089
               

               
Cow position:
               
chr1:65389493-65389800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
274, 0
               

               
Conread position:
               
783-1089
               

               
Cow position:
               
chr1:66490516-66490822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
272, 148
               

               
Conread position:
               
783-1089
               

               
Cow position:
               
chr1:66775362-66775679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
72, 140
               

               
Conread position:
               
783-1089
               

               
Cow position:
               
chr1:67001144-67001451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
271, 0
               

               
Conread position:
               
783-1089
               

               
Cow position:
               
chr1:67832202-67831895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
271, 0
               

               
Conread position:
               
783-1089
               

               
Cow position:
               
chr1:68950142-68950452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
167, 112
               

               
Conread position:
               
783-1089
               

               
Cow position:
               
chr1:69406092-69406399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
274, 0
               

               
Conread position:
               
783-1089
               

               
Cow position:
               
chr1:69504437-69504133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
271, 49
               

               
Conread position:
               
783-1089
               

               
Cow position:
               
chr1:69671687-69671380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
271, 0
               

               
Conread position:
               
783-1089
               

               
Cow position:
               
chr1:69769753-69770060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
273, 0
               

               
Conread position:
               
783-1089
               

               
Cow position:
               
chr1:71559810-71559503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
271, 0
               

               
Conread position:
               
783-1089
               

               
Cow position:
               
chr1:72767089-72766795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
271, 176
               

               
Conread position:
               
783-1089
               

               
Cow position:
               
chr1:72986392-72986699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
274, 0
               

               
Conread position:
               
783-1089
               

               
Cow position:
               
chr1:73064401-73064094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
274, 0
               

               
Conread position:
               
783-1089
               

               
Cow position:
               
chr1:73565543-73565237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
271, 19
               

               
Conread position:
               
783-1089
               

               
Cow position:
               
chr1:76618539-76618233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
274, 210
               

               
Conread position:
               
783-1089
               

               
Cow position:
               
chr1:76877966-76878273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
271, 0
               

               
Conread position:
               
783-1089
               

               
Cow position:
               
chr1:77747680-77747984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
271, 97
               

               
Conread position:
               
783-1089
               

               
Cow position:
               
chr1:78922079-78921772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
271, 0
               

               
Conread position:
               
783-1089
               

               
Cow position:
               
chr1:81302049-81302357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
233, 0
               

               
Conread position:
               
783-1089
               

               
Cow position:
               
chr1:82478919-82479224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
271, 172
               

               
Conread position:
               
783-1089
               

               
Cow position:
               
chr1:82519188-82518881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 21
               

               
Conread position:
               
783-1089
               

               
Cow position:
               
chr1:82921215-82920898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 18
               

               
Conread position:
               
783-1089
               

               
Cow position:
               
chr1:85630270-85630577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
275, 0
               

               
Conread position:
               
783-1089
               

               
Cow position:
               
chr1:85777525-85777218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
274, 0
               

               
Conread position:
               
783-1089
               

               
Cow position:
               
chr1:85794891-85795188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 14
               

               
Conread position:
               
783-1089
               

               
Cow position:
               
chr1:86363407-86363711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
261, 74
               

               
Conread position:
               
783-1089
               

               
Cow position:
               
chr1:86545203-86544896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
271, 0
               

               
Conread position:
               
783-1089
               

               
Cow position:
               
chr1:86593370-86593063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
271, 0
               

               
Conread position:
               
783-1089
               

               
Cow position:
               
chr1:86600081-86599774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
274, 0
               

               
Conread position:
               
783-1089
               

               
Cow position:
               
chr1:86705085-86705393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
783-1089
               

               
Cow position:
               
chr1:87722753-87722446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
271, 0
               

               
Conread position:
               
783-1089
               

               
Cow position:
               
chr1:88178792-88179099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
274, 0
               

               
Conread position:
               
783-1089
               

               
Cow position:
               
chr1:89090602-89090296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
271, 226
               

               
Conread position:
               
783-1089
               

               
Cow position:
               
chr1:89186506-89186217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
274, 67
               

               
Conread position:
               
783-1089
               

               
Cow position:
               
chr1:89431337-89431644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
271, 0
               

               
Conread position:
               
783-1089
               

               
Cow position:
               
chr1:89493278-89492989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
272, 106
               

               
Conread position:
               
783-1089
               

               
Cow position:
               
chr1:90605941-90605635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
274, 24
               

               
Conread position:
               
783-1089
               

               
Cow position:
               
chr1:90912763-90913070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
274, 0
               

               
Conread position:
               
783-1089
               

               
Cow position:
               
chr1:91673166-91673473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
271, 0
               

               
Conread position:
               
783-1089
               

               
Cow position:
               
chr1:91890457-91890150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
274, 0
               

               
Conread position:
               
783-1089
               

               
Cow position:
               
chr1:92035032-92035339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
271, 0
               

               
Conread position:
               
783-1089
               

               
Cow position:
               
chr1:93857457-93857763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
274, 227
               

               
Conread position:
               
783-1089
               

               
Cow position:
               
chr1:100451727-100451426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
272, 70
               

               
Conread position:
               
783-1089
               

               
Cow position:
               
chr1:100509685-100509989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
271, 259
               

               
Conread position:
               
783-1089
               

               
Cow position:
               
chr1:100709006-100709312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
272, 27
               

               
Conread position:
               
783-1089
               

               
Cow position:
               
chr1:101010979-101010674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
187, 18
               

               
Conread position:
               
783-1089
               

               
Cow position:
               
chr1:101126201-101125895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
256, 242
               

               
Conread position:
               
783-1089
               

               
Cow position:
               
chr1:102551946-102552258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 0
               

               
Conread position:
               
783-1090
               

               
Cow position:
               
chr1:6197341-6197034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
274, 42
               

               
Conread position:
               
783-1090
               

               
Cow position:
               
chr1:9261446-9261751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
271, 233
               

               
Conread position:
               
783-1090
               

               
Cow position:
               
chr1:31363163-31362871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 18
               

               
Conread position:
               
783-1090
               

               
Cow position:
               
chr1:46802443-46802746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
267, 17
               

               
Conread position:
               
783-1090
               

               
Cow position:
               
chr1:61342777-61342464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
177, 288
               

               
Conread position:
               
783-1092
               

               
Cow position:
               
chr1:88267205-88266898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
46, 189
               

               
Conread position:
               
783-1093
               

               
Cow position:
               
chr1:88393639-88393340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
258, 70
               

               
Conread position:
               
783-1098
               

               
Cow position:
               
chr1:4276577-4276896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
179, 136
               

               
Conread position:
               
783-1100
               

               
Cow position:
               
chr1:72804575-72804257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
106, 74
               

               
Conread position:
               
783-1108
               

               
Cow position:
               
chr1:12803017-12803352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
79, 237
               

               
Conread position:
               
783-1108
               

               
Cow position:
               
chr1:17033655-17033333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
271, 45
               

               
Conread position:
               
783-1108
               

               
Cow position:
               
chr1:18024862-18024554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
275, 79
               

               
Conread position:
               
783-1108
               

               
Cow position:
               
chr1:22617476-22617147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 141
               

               
Conread position:
               
783-1108
               

               
Cow position:
               
chr1:26142274-26141947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
211, 273
               

               
Conread position:
               
783-1108
               

               
Cow position:
               
chr1:30103643-30103317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
271, 0
               

               
Conread position:
               
783-1108
               

               
Cow position:
               
chr1:46838729-46839049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
275, 179
               

               
Conread position:
               
783-1108
               

               
Cow position:
               
chr1:57635886-57635558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
233, 0
               

               
Conread position:
               
783-1108
               

               
Cow position:
               
chr1:66972223-66971899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
270, 0
               

               
Conread position:
               
783-1108
               

               
Cow position:
               
chr1:71677121-71676799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
271, 176
               

               
Conread position:
               
783-1108
               

               
Cow position:
               
chr1:76872816-76873142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
275, 309
               

               
Conread position:
               
783-1108
               

               
Cow position:
               
chr1:91104976-91105302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
271, 0
               

               
Conread position:
               
783-1112
               

               
Cow position:
               
chr1:31239293-31238966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
271, 13
               

               
Conread position:
               
783-1113
               

               
Cow position:
               
chr1:5504874-5505203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 55
               

               
Conread position:
               
783-1113
               

               
Cow position:
               
chr1:21114486-21114155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
275, 74
               

               
Conread position:
               
783-1118
               

               
Cow position:
               
chr1:3669191-3668849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
13, 18
               

               
Conread position:
               
783-1118
               

               
Cow position:
               
chr1:10033444-10033779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
266, 310
               

               
Conread position:
               
783-1118
               

               
Cow position:
               
chr1:79633618-79633282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
271, 0
               

               
Conread position:
               
783-1120
               

               
Cow position:
               
chr1:21458627-21458960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
253, 42
               

               
Conread position:
               
783-1140
               

               
Cow position:
               
chr1:101524453-101524101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 264
               

               
Conread position:
               
784-947
               

               
Cow position:
               
chr1:29704709-29704548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
784-1034
               

               
Cow position:
               
chr1:8528482-8528236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
138, 0
               

               
Conread position:
               
784-1049
               

               
Cow position:
               
chr1:31724663-31724403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
137, 126
               

               
Conread position:
               
784-1075
               

               
Cow position:
               
chr1:68818967-68818678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
270, 195
               

               
Conread position:
               
784-1077
               

               
Cow position:
               
chr1:29365343-29365635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
270, 175
               

               
Conread position:
               
784-1083
               

               
Cow position:
               
chr1:53396649-53396940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 99
               

               
Conread position:
               
784-1089
               

               
Cow position:
               
chr1:13438056-13438362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
270, 0
               

               
Conread position:
               
784-1089
               

               
Cow position:
               
chr1:22727228-22727533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 11
               

               
Conread position:
               
784-1089
               

               
Cow position:
               
chr1:42888555-42888243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 139
               

               
Conread position:
               
784-1089
               

               
Cow position:
               
chr1:51967197-51967495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 114
               

               
Conread position:
               
784-1089
               

               
Cow position:
               
chr1:52755597-52755292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
273, 166
               

               
Conread position:
               
784-1089
               

               
Cow position:
               
chr1:68846766-68846469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
270, 105
               

               
Conread position:
               
784-1106
               

               
Cow position:
               
chr1:86451281-86451599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
177, 65
               

               
Conread position:
               
784-1108
               

               
Cow position:
               
chr1:70381612-70381286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 309
               

               
Conread position:
               
784-1108
               

               
Cow position:
               
chr1:100536098-100536408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
195, 80
               

               
Conread position:
               
785-924
               

               
Cow position:
               
chr1:72308750-72308612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
113, 0
               

               
Conread position:
               
785-931
               

               
Cow position:
               
chr1:76861120-76860975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
785-946
               

               
Cow position:
               
chr1:85143505-85143347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
785-1016
               

               
Cow position:
               
chr1:16974188-16973960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
785-1042
               

               
Cow position:
               
chr1:44128442-44128191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
785-1044
               

               
Cow position:
               
chr1:72139147-72139404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
54, 15
               

               
Conread position:
               
785-1052
               

               
Cow position:
               
chr1:32071967-32072235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
88, 67
               

               
Conread position:
               
785-1060
               

               
Cow position:
               
chr1:102322164-102321891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
267, 104
               

               
Conread position:
               
785-1066
               

               
Cow position:
               
chr1:56631325-56631606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
269, 175
               

               
Conread position:
               
785-1075
               

               
Cow position:
               
chr1:70388379-70388088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
59, 89
               

               
Conread position:
               
785-1076
               

               
Cow position:
               
chr1:56745820-56746102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
785-1077
               

               
Cow position:
               
chr1:30306353-30306061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
131, 122
               

               
Conread position:
               
785-1083
               

               
Cow position:
               
chr1:99916373-99916674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 259
               

               
Conread position:
               
785-1084
               

               
Cow position:
               
chr1:44963540-44963244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
43, 54
               

               
Conread position:
               
785-1084
               

               
Cow position:
               
chr1:53371294-53371594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
269, 0
               

               
Conread position:
               
785-1085
               

               
Cow position:
               
chr1:37542369-37542054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
61, 52
               

               
Conread position:
               
785-1086
               

               
Cow position:
               
chr1:99689700-99690001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
269, 107
               

               
Conread position:
               
785-1088
               

               
Cow position:
               
chr1:55274101-55273802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
269, 59
               

               
Conread position:
               
785-1089
               

               
Cow position:
               
chr1:4453838-4453543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
785-1089
               

               
Cow position:
               
chr1:21576484-21576783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 212
               

               
Conread position:
               
785-1089
               

               
Cow position:
               
chr1:52864337-52864033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
257, 88
               

               
Conread position:
               
785-1089
               

               
Cow position:
               
chr1:54932864-54933169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
269, 0
               

               
Conread position:
               
785-1089
               

               
Cow position:
               
chr1:61562973-61563278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
269, 0
               

               
Conread position:
               
785-1089
               

               
Cow position:
               
chr1:61748507-61748209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
269, 71
               

               
Conread position:
               
785-1089
               

               
Cow position:
               
chr1:70069601-70069919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 0
               

               
Conread position:
               
785-1089
               

               
Cow position:
               
chr1:71134826-71135144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
80, 53
               

               
Conread position:
               
785-1089
               

               
Cow position:
               
chr1:79553431-79553737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 0
               

               
Conread position:
               
785-1090
               

               
Cow position:
               
chr1:18281922-18282219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
268, 17
               

               
Conread position:
               
785-1095
               

               
Cow position:
               
chr1:58088608-58088309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
252, 53
               

               
Conread position:
               
785-1106
               

               
Cow position:
               
chr1:79913862-79914175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
269, 109
               

               
Conread position:
               
785-1108
               

               
Cow position:
               
chr1:53311167-53311490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
272, 33
               

               
Conread position:
               
785-1108
               

               
Cow position:
               
chr1:68602694-68602370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
272, 305
               

               
Conread position:
               
785-1108
               

               
Cow position:
               
chr1:73762593-73762285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
269, 120
               

               
Conread position:
               
785-1128
               

               
Cow position:
               
chr1:76555780-76555431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
172, 0
               

               
Conread position:
               
786-1089
               

               
Cow position:
               
chr1:76701705-76701426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
130, 26
               

               
Conread position:
               
786-1089
               

               
Cow position:
               
chr1:99108289-99107986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
268, 33
               

               
Conread position:
               
787-1069
               

               
Cow position:
               
chr1:33392005-33392295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
61, 158
               

               
Conread position:
               
787-1089
               

               
Cow position:
               
chr1:34684436-34684727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
267, 105
               

               
Conread position:
               
787-1089
               

               
Cow position:
               
chr1:82369365-82369661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
267, 80
               

               
Conread position:
               
789-966
               

               
Cow position:
               
chr1:67823349-67823525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
789-1002
               

               
Cow position:
               
chr1:61537055-61536843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
101, 172
               

               
Conread position:
               
789-1059
               

               
Cow position:
               
chr1:79254973-79255236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
268, 76
               

               
Conread position:
               
790-1040
               

               
Cow position:
               
chr1:58197505-58197258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
222, 67
               

               
Conread position:
               
790-1076
               

               
Cow position:
               
chr1:89224950-89225238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
7, 204
               

               
Conread position:
               
790-1090
               

               
Cow position:
               
chr1:99629109-99628816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
268, 117
               

               
Conread position:
               
790-1118
               

               
Cow position:
               
chr1:21677742-21678071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
83, 75
               

               
Conread position:
               
791-1089
               

               
Cow position:
               
chr1:22287484-22287775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
138, 216
               

               
Conread position:
               
792-950
               

               
Cow position:
               
chr1:77557829-77557674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
792-1048
               

               
Cow position:
               
chr1:40965464-40965206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
45, 8
               

               
Conread position:
               
792-1108
               

               
Cow position:
               
chr1:22838034-22837721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
12, 62
               

               
Conread position:
               
796-1060
               

               
Cow position:
               
chr1:76852363-76852627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
259, 54
               

               
Conread position:
               
796-1064
               

               
Cow position:
               
chr1:95766344-95766078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
71, 54
               

               
Conread position:
               
796-1089
               

               
Cow position:
               
chr1:25053641-25053346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
796-1089
               

               
Cow position:
               
chr1:77866523-77866814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
45, 113
               

               
Conread position:
               
796-1108
               

               
Cow position:
               
chr1:101833354-101833657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
258, 70
               

               
Conread position:
               
796-1127
               

               
Cow position:
               
chr1:97285715-97285375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 93
               

               
Conread position:
               
797-1044
               

               
Cow position:
               
chr1:16118424-16118669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
797-1084
               

               
Cow position:
               
chr1:79113383-79113656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
123, 69
               

               
Conread position:
               
797-1089
               

               
Cow position:
               
chr1:98656999-98656712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
150, 87
               

               
Conread position:
               
797-1124
               

               
Cow position:
               
chr1:68251934-68252241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
257, 96
               

               
Conread position:
               
799-1086
               

               
Cow position:
               
chr1:3743295-3743008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
255, 161
               

               
Conread position:
               
800-1089
               

               
Cow position:
               
chr1:59248795-59248511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
254, 66
               

               
Conread position:
               
800-1089
               

               
Cow position:
               
chr1:81926223-81925942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
237, 57
               

               
Conread position:
               
800-1109
               

               
Cow position:
               
chr1:31324445-31324143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
41, 18
               

               
Conread position:
               
801-1089
               

               
Cow position:
               
chr1:42875691-42875415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
253, 194
               

               
Conread position:
               
802-1003
               

               
Cow position:
               
chr1:7636250-7636447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
8, 13
               

               
Conread position:
               
802-1003
               

               
Cow position:
               
chr1:31123556-31123357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
108, 0
               

               
Conread position:
               
802-1040
               

               
Cow position:
               
chr1:59592866-59592630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
136, 0
               

               
Conread position:
               
802-1049
               

               
Cow position:
               
chr1:67289364-67289610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
194, 0
               

               
Conread position:
               
802-1056
               

               
Cow position:
               
chr1:32100139-32099885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
802-1065
               

               
Cow position:
               
chr1:19441572-19441309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
113, 108
               

               
Conread position:
               
802-1069
               

               
Cow position:
               
chr1:83108656-83108389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
255, 55
               

               
Conread position:
               
802-1076
               

               
Cow position:
               
chr1:72183924-72183650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
255, 28
               

               
Conread position:
               
802-1083
               

               
Cow position:
               
chr1:45005922-45006210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
204, 36
               

               
Conread position:
               
802-1083
               

               
Cow position:
               
chr1:73384424-73384701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
213, 36
               

               
Conread position:
               
802-1084
               

               
Cow position:
               
chr1:61140393-61140657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
177, 100
               

               
Conread position:
               
802-1084
               

               
Cow position:
               
chr1:99864870-99865156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
108, 36
               

               
Conread position:
               
802-1089
               

               
Cow position:
               
chr1:15368683-15368404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
212, 108
               

               
Conread position:
               
802-1089
               

               
Cow position:
               
chr1:19161922-19162209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
252, 264
               

               
Conread position:
               
802-1089
               

               
Cow position:
               
chr1:19236543-19236256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
252, 25
               

               
Conread position:
               
802-1089
               

               
Cow position:
               
chr1:20847060-20846772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
252, 0
               

               
Conread position:
               
802-1089
               

               
Cow position:
               
chr1:26812119-26811831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
255, 0
               

               
Conread position:
               
802-1089
               

               
Cow position:
               
chr1:43511434-43511148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
159, 171
               

               
Conread position:
               
802-1089
               

               
Cow position:
               
chr1:47118910-47119198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
252, 0
               

               
Conread position:
               
802-1089
               

               
Cow position:
               
chr1:57505744-57506032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
252, 0
               

               
Conread position:
               
802-1089
               

               
Cow position:
               
chr1:62927422-62927710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
252, 0
               

               
Conread position:
               
802-1089
               

               
Cow position:
               
chr1:75402849-75403135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
252, 198
               

               
Conread position:
               
802-1089
               

               
Cow position:
               
chr1:89767643-89767364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
252, 211
               

               
Conread position:
               
802-1096
               

               
Cow position:
               
chr1:21132910-21132619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
802-1108
               

               
Cow position:
               
chr1:31415270-31414962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 108
               

               
Conread position:
               
803-1026
               

               
Cow position:
               
chr1:88305983-88305762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
803-1031
               

               
Cow position:
               
chr1:72599071-72599299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
803-1084
               

               
Cow position:
               
chr1:24594570-24594848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
13, 55
               

               
Conread position:
               
803-1089
               

               
Cow position:
               
chr1:23098606-23098878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
250, 47
               

               
Conread position:
               
804-1089
               

               
Cow position:
               
chr1:57526231-57526517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
250, 0
               

               
Conread position:
               
804-1089
               

               
Cow position:
               
chr1:67975242-67974963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
246, 80
               

               
Conread position:
               
805-1058
               

               
Cow position:
               
chr1:82863775-82864024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
805-1066
               

               
Cow position:
               
chr1:48686107-48685847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
116, 33
               

               
Conread position:
               
805-1069
               

               
Cow position:
               
chr1:97047934-97047672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
19, 170
               

               
Conread position:
               
805-1070
               

               
Cow position:
               
chr1:50257463-50257729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
55, 83
               

               
Conread position:
               
805-1089
               

               
Cow position:
               
chr1:31813976-31814256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
111, 99
               

               
Conread position:
               
805-1089
               

               
Cow position:
               
chr1:76670967-76670688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
116, 79
               

               
Conread position:
               
805-1108
               

               
Cow position:
               
chr1:27493930-27494217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
249, 25
               

               
Conread position:
               
806-1084
               

               
Cow position:
               
chr1:61220392-61220670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 150
               

               
Conread position:
               
806-1089
               

               
Cow position:
               
chr1:25780246-25780527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
248, 58
               

               
Conread position:
               
806-1089
               

               
Cow position:
               
chr1:57574623-57574345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 48
               

               
Conread position:
               
806-1108
               

               
Cow position:
               
chr1:101797554-101797850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
152, 125
               

               
Conread position:
               
807-1076
               

               
Cow position:
               
chr1:11854994-11854727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
177, 0
               

               
Conread position:
               
808-1032
               

               
Cow position:
               
chr1:102783535-102783757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
808-1084
               

               
Cow position:
               
chr1:52335768-52335480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
149, 87
               

               
Conread position:
               
810-1089
               

               
Cow position:
               
chr1:29461289-29461572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
157, 0
               

               
Conread position:
               
812-1058
               

               
Cow position:
               
chr1:27113190-27112948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 0
               

               
Conread position:
               
813-1047
               

               
Cow position:
               
chr1:20079186-20078954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
813-1060
               

               
Cow position:
               
chr1:89484080-89484320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
242, 117
               

               
Conread position:
               
813-1089
               

               
Cow position:
               
chr1:88389299-88389569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
244, 41
               

               
Conread position:
               
813-1108
               

               
Cow position:
               
chr1:54391149-54390865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
241, 67
               

               
Conread position:
               
814-1016
               

               
Cow position:
               
chr1:50372099-50371900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
127, 39
               

               
Conread position:
               
814-1064
               

               
Cow position:
               
chr1:51318344-51318095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
240, 10
               

               
Conread position:
               
814-1077
               

               
Cow position:
               
chr1:91595785-91595527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
228, 76
               

               
Conread position:
               
815-1008
               

               
Cow position:
               
chr1:54164083-54163891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
11, 43
               

               
Conread position:
               
815-1066
               

               
Cow position:
               
chr1:10025118-10024871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
164, 60
               

               
Conread position:
               
816-1003
               

               
Cow position:
               
chr1:93426325-93426143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
122, 0
               

               
Conread position:
               
816-1069
               

               
Cow position:
               
chr1:42421955-42422211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
81, 8
               

               
Conread position:
               
817-1069
               

               
Cow position:
               
chr1:16848481-16848729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
221, 37
               

               
Conread position:
               
817-1083
               

               
Cow position:
               
chr1:57120852-57120596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
233, 55
               

               
Conread position:
               
817-1089
               

               
Cow position:
               
chr1:47455009-47454736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 112
               

               
Conread position:
               
817-1089
               

               
Cow position:
               
chr1:73443881-73443609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
136, 54
               

               
Conread position:
               
817-1108
               

               
Cow position:
               
chr1:99230090-99229798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
93, 73
               

               
Conread position:
               
820-1076
               

               
Cow position:
               
chr1:58418653-58418904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
234, 49
               

               
Conread position:
               
820-1089
               

               
Cow position:
               
chr1:18226496-18226225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
42, 87
               

               
Conread position:
               
820-1089
               

               
Cow position:
               
chr1:28520622-28520892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
234, 0
               

               
Conread position:
               
820-1089
               

               
Cow position:
               
chr1:31534823-31535093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
234, 0
               

               
Conread position:
               
820-1123
               

               
Cow position:
               
chr1:66913235-66913531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
207, 30
               

               
Conread position:
               
821-1018
               

               
Cow position:
               
chr1:53250933-53250744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
822-1043
               

               
Cow position:
               
chr1:84442937-84443158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
822-1089
               

               
Cow position:
               
chr1:58339895-58340163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
235, 0
               

               
Conread position:
               
823-978
               

               
Cow position:
               
chr1:67949393-67949548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
824-1010
               

               
Cow position:
               
chr1:80902603-80902418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
136, 0
               

               
Conread position:
               
824-1083
               

               
Cow position:
               
chr1:99572589-99572329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 59
               

               
Conread position:
               
824-1089
               

               
Cow position:
               
chr1:8602995-8602735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 108
               

               
Conread position:
               
825-1068
               

               
Cow position:
               
chr1:28677047-28677289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
826-949
               

               
Cow position:
               
chr1:49267298-49267421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
826-1035
               

               
Cow position:
               
chr1:83135937-83136146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
828-1045
               

               
Cow position:
               
chr1:100606679-100606896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
13, 142
               

               
Conread position:
               
830-1025
               

               
Cow position:
               
chr1:35711648-35711842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
832-1089
               

               
Cow position:
               
chr1:1023816-1023557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
222, 0
               

               
Conread position:
               
832-1089
               

               
Cow position:
               
chr1:18137448-18137193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
35, 58
               

               
Conread position:
               
832-1089
               

               
Cow position:
               
chr1:31970440-31970183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
80, 126
               

               
Conread position:
               
834-1089
               

               
Cow position:
               
chr1:30440154-30440401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
834-1089
               

               
Cow position:
               
chr1:43568522-43568269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
220, 129
               

               
Conread position:
               
835-1048
               

               
Cow position:
               
chr1:55318538-55318328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
119, 0
               

               
Conread position:
               
838-1030
               

               
Cow position:
               
chr1:81861048-81860856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
838-1086
               

               
Cow position:
               
chr1:79589849-79590097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
210, 9
               

               
Conread position:
               
838-1089
               

               
Cow position:
               
chr1:22012972-22012719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
140, 69
               

               
Conread position:
               
838-1089
               

               
Cow position:
               
chr1:88984459-88984210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
216, 180
               

               
Conread position:
               
838-1094
               

               
Cow position:
               
chr1:101787946-101787688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
13, 46
               

               
Conread position:
               
840-1081
               

               
Cow position:
               
chr1:20002006-20001758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
109, 34
               

               
Conread position:
               
841-1089
               

               
Cow position:
               
chr1:19776099-19775850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
213, 0
               

               
Conread position:
               
842-1083
               

               
Cow position:
               
chr1:73403782-73404020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
122, 15
               

               
Conread position:
               
842-1089
               

               
Cow position:
               
chr1:45021229-45021473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
100, 33
               

               
Conread position:
               
844-1069
               

               
Cow position:
               
chr1:77165836-77166062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
15, 153
               

               
Conread position:
               
845-1089
               

               
Cow position:
               
chr1:38279743-38279499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
209, 82
               

               
Conread position:
               
845-1089
               

               
Cow position:
               
chr1:77656544-77656786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
65, 131
               

               
Conread position:
               
846-1089
               

               
Cow position:
               
chr1:30532022-30531779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
211, 32
               

               
Conread position:
               
847-1069
               

               
Cow position:
               
chr1:90865039-90865252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
207, 60
               

               
Conread position:
               
850-1076
               

               
Cow position:
               
chr1:81001353-81001125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
167, 11
               

               
Conread position:
               
850-1084
               

               
Cow position:
               
chr1:85837598-85837839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
135, 168
               

               
Conread position:
               
851-1089
               

               
Cow position:
               
chr1:51883617-51883856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
203, 0
               

               
Conread position:
               
854-1089
               

               
Cow position:
               
chr1:3970259-3970023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
200, 0
               

               
Conread position:
               
854-1089
               

               
Cow position:
               
chr1:52067632-52067868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
200, 0
               

               
Conread position:
               
855-1089
               

               
Cow position:
               
chr1:7324076-7324312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 0
               

               
Conread position:
               
855-1089
               

               
Cow position:
               
chr1:21353311-21353076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
97, 22
               

               
Conread position:
               
856-1089
               

               
Cow position:
               
chr1:38383559-38383330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
129, 35
               

               
Conread position:
               
857-1060
               

               
Cow position:
               
chr1:57744208-57744016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
857-1083
               

               
Cow position:
               
chr1:14241051-14240832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
200, 122
               

               
Conread position:
               
857-1083
               

               
Cow position:
               
chr1:55044254-55044027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
200, 0
               

               
Conread position:
               
857-1084
               

               
Cow position:
               
chr1:30034638-30034863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
105, 56
               

               
Conread position:
               
857-1089
               

               
Cow position:
               
chr1:17765387-17765620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
197, 0
               

               
Conread position:
               
857-1089
               

               
Cow position:
               
chr1:92008281-92008515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
857-1089
               

               
Cow position:
               
chr1:101130997-101130767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
196, 50
               

               
Conread position:
               
857-1092
               

               
Cow position:
               
chr1:67317711-67317949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
85, 218
               

               
Conread position:
               
857-1108
               

               
Cow position:
               
chr1:72812169-72812420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
197, 230
               

               
Conread position:
               
858-1083
               

               
Cow position:
               
chr1:42056626-42056835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
859-1089
               

               
Cow position:
               
chr1:7711792-7712023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
16, 179
               

               
Conread position:
               
860-1084
               

               
Cow position:
               
chr1:96194132-96193910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
61, 37
               

               
Conread position:
               
860-1089
               

               
Cow position:
               
chr1:86613321-86613544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
172, 0
               

               
Conread position:
               
861-1089
               

               
Cow position:
               
chr1:26537174-26536945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
193, 0
               

               
Conread position:
               
862-1089
               

               
Cow position:
               
chr1:70051254-70051480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
191, 0
               

               
Conread position:
               
862-1089
               

               
Cow position:
               
chr1:85807597-85807373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
192, 114
               

               
Conread position:
               
863-1084
               

               
Cow position:
               
chr1:25120255-25120041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
190, 142
               

               
Conread position:
               
863-1089
               

               
Cow position:
               
chr1:80565063-80564836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
191, 0
               

               
Conread position:
               
864-1089
               

               
Cow position:
               
chr1:58218121-58218346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
57, 30
               

               
Conread position:
               
865-1089
               

               
Cow position:
               
chr1:85337891-85338119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
20, 99
               

               
Conread position:
               
872-1089
               

               
Cow position:
               
chr1:30371928-30372146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
185, 0
               

               
Conread position:
               
873-1089
               

               
Cow position:
               
chr1:58192778-58192564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
184, 104
               

               
Conread position:
               
874-1016
               

               
Cow position:
               
chr1:85773251-85773391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
874-1083
               

               
Cow position:
               
chr1:30883628-30883418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
47, 36
               

               
Conread position:
               
874-1089
               

               
Cow position:
               
chr1:7405696-7405912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
180, 0
               

               
Conread position:
               
874-1089
               

               
Cow position:
               
chr1:98354370-98354154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
180, 0
               

               
Conread position:
               
874-1108
               

               
Cow position:
               
chr1:53519691-53519924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
42, 59
               

               
Conread position:
               
875-1108
               

               
Cow position:
               
chr1:26446186-26446414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
175, 98
               

               
Conread position:
               
876-1049
               

               
Cow position:
               
chr1:64942327-64942500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
43, 48
               
876-1089UCSC Genome Browser

               
Conread position:
               

               

               
Cow position:
               
chr1:83169468-83169683 (view  custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 0
               
877-1089UCSC Genome Browser

               
               
               
Conread position:

               
               
               
Cow position:
chr1:52355645-52355431 (view  custom track)

               
               
               
Alignm length:
215

               
               
               
Alignm identity:
159

               
               
               
Alignm E-value:
2e-37

               
               
               
Alignm gaps (pig, cow):
21, 0
880-1083UCSC Genome Browser

               
               
               
Conread position:

               
               
               
Cow position:
chr1:22778853-22778650 (view  custom track)

               
               
               
Alignm length:
205

               
               
               
Alignm identity:
147

               
               
               
Alignm E-value:
1e-30

               
               
               
Alignm gaps (pig, cow):
174, 145

               
               
               Conread position:882-1118
               
               
               Cow position:chr1:57758948-57759185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:171
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):172, 0

               
               
               Conread position:884-1087
               
               
               Cow position:chr1:57645255-57645464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):125, 187

               
               
               Conread position:885-1089
               
               
               Cow position:chr1:2006655-2006454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):168, 87

               
               
               Conread position:886-1089
               
               
               Cow position:chr1:9595901-9595704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):171, 45

               
               
               Conread position:886-1089
               
               
               Cow position:chr1:29428634-29428840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):144, 0

               
               
               Conread position:887-1089
               
               
               Cow position:chr1:74536665-74536456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:888-1089
               
               
               Cow position:chr1:53649692-53649893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:163
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):95, 9

               
               
               Conread position:892-1089
               
               
               Cow position:chr1:475221-475418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):162, 184

               
               
               Conread position:896-1070
               
               
               Cow position:chr1:88027876-88028048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:130
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):158, 26

               
               
               Conread position:896-1108
               
               
               Cow position:chr1:16838364-16838577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):158, 196

               
               
               Conread position:901-1092
               
               
               Cow position:chr1:58440241-58440055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):153, 66

               
               
               Conread position:903-1089
               
               
               Cow position:chr1:54476856-54477043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):62, 26

               
               
               Conread position:914-1083
               
               
               Cow position:chr1:22252755-22252924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):140, 107

               
               
               Conread position:914-1108
               
               
               Cow position:chr1:72307254-72307061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:152
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):140, 21

               
               
               Conread position:915-1089
               
               
               Cow position:chr1:19146101-19145928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:132
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):28, 167

               
               
               Conread position:916-1095
               
               
               Cow position:chr1:2764181-2764364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):38, 142

               
               
               Conread position:920-1083
               
               
               Cow position:chr1:13718761-13718599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):133, 50

               
               
               Conread position:920-1089
               
               
               Cow position:chr1:20543297-20543468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):134, 0

               
               
               Conread position:920-1089
               
               
               Cow position:chr1:20797897-20798062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):33, 82

               
               
               Conread position:920-1089
               
               
               Cow position:chr1:22226715-22226884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:127
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):134, 101

               
               
               Conread position:920-1089
               
               
               Cow position:chr1:38417890-38418064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:133
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:920-1093
               
               
               Cow position:chr1:24922450-24922280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):133, 80

               
               
               Conread position:920-1108
               
               
               Cow position:chr1:52053892-52054080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):134, 152

               
               
               Conread position:921-1031
               
               
               Cow position:chr1:88329648-88329539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:89
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:921-1089
               
               
               Cow position:chr1:88563839-88563673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):129, 0

               
               
               Conread position:923-1089
               
               
               Cow position:chr1:54296069-54295902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):135, 0

               
               
               Conread position:927-1089
               
               
               Cow position:chr1:12468712-12468549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):127, 0

               
               
               Conread position:927-1089
               
               
               Cow position:chr1:57958479-57958322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:928-1048
               
               
               Cow position:chr1:100592624-100592504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:95
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:928-1076
               
               
               Cow position:chr1:11289310-11289161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:928-1089
               
               
               Cow position:chr1:54472335-54472173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:928-1089
               
               
               Cow position:chr1:55493985-55493823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:928-1089
               
               
               Cow position:chr1:58356654-58356492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:928-1089
               
               
               Cow position:chr1:89793032-89793194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:929-1077
               
               
               Cow position:chr1:70038161-70038012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):125, 0

               
               
               Conread position:935-1077
               
               
               Cow position:chr1:8517984-8517841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:936-1089
               
               
               Cow position:chr1:30494655-30494809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:117
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:936-1094
               
               
               Cow position:chr1:85143137-85142978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:941-1089
               
               
               Cow position:chr1:26722570-26722421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:942-1089
               
               
               Cow position:chr1:19158364-19158216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:944-1089
               
               
               Cow position:chr1:77554902-77554757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:115
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):110, 60

               
               
               Conread position:946-1089
               
               
               Cow position:chr1:73967609-73967753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:114
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:947-1118
               
               
               Cow position:chr1:98534693-98534867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):6, 147

               
               
               Conread position:950-1089
               
               
               Cow position:chr1:47079079-47078939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:106
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:952-1089
               
               
               Cow position:chr1:99118587-99118725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:110
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:962-1089
               
               
               Cow position:chr1:31707595-31707723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:102
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:964-1089
               
               
               Cow position:chr1:56666215-56666341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:99
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:965-1112
               
               
               Cow position:chr1:16338113-16337965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:109
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:972-1089
               
               
               Cow position:chr1:7162685-7162567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:93
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:972-1089
               
               
               Cow position:chr1:33656062-33655944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:95
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:972-1089
               
               
               Cow position:chr1:46411164-46411282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:93
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:972-1089
               
               
               Cow position:chr1:89234909-89234791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:94
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:975-1089
               
               
               Cow position:chr1:9308892-9308777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:92
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:983-1108
               
               
               Cow position:chr1:27309942-27309816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:97
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:776-994
               
               
               Cow position:chr10:27134520-27134308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):145, 20

               
               
               Conread position:781-1068
               
               
               Cow position:chr10:49835031-49835315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:190
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):243, 123

               
               
               Conread position:781-1077
               
               
               Cow position:chr10:7246700-7246411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:782-977
               
               
               Cow position:chr10:19542487-19542292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:782-993
               
               
               Cow position:chr10:19296446-19296238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:164
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):11, 22

               
               
               Conread position:782-1034
               
               
               Cow position:chr10:39776048-39775797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:187
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):197, 85

               
               
               Conread position:782-1037
               
               
               Cow position:chr10:31044643-31044392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:782-1064
               
               
               Cow position:chr10:922328-922051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):73, 32

               
               
               Conread position:782-1076
               
               
               Cow position:chr10:48653836-48654130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):143, 52

               
               
               Conread position:782-1083
               
               
               Cow position:chr10:37309090-37309387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):28, 33

               
               
               Conread position:782-1084
               
               
               Cow position:chr10:60206099-60206394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:214
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):272, 157

               
               
               Conread position:782-1089
               
               
               Cow position:chr10:1434090-1434393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:200
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):245, 56

               
               
               Conread position:782-1089
               
               
               Cow position:chr10:6905269-6905575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:213
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):272, 128

               
               
               Conread position:782-1089
               
               
               Cow position:chr10:8365774-8365472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):264, 74

               
               
               Conread position:782-1089
               
               
               Cow position:chr10:12101412-12101107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 154

               
               
               Conread position:782-1089
               
               
               Cow position:chr10:15620429-15620121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 179

               
               
               Conread position:782-1089
               
               
               Cow position:chr10:28519523-28519221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):21, 5

               
               
               Conread position:782-1089
               
               
               Cow position:chr10:34664810-34664503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):272, 20

               
               
               Conread position:782-1090
               
               
               Cow position:chr10:37789041-37788738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 137

               
               
               Conread position:782-1108
               
               
               Cow position:chr10:24750868-24751201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:232
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):253, 181

               
               
               Conread position:782-1108
               
               
               Cow position:chr10:57743165-57743493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):50, 135

               
               
               Conread position:782-1114
               
               
               Cow position:chr10:47917637-47917968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):28, 33

               
               
               Conread position:782-1137
               
               
               Cow position:chr10:24782943-24782584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:230
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):125, 37

               
               
               Conread position:783-899
               
               
               Cow position:chr10:41879898-41880014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:96
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-905
               
               
               Cow position:chr10:39813431-39813309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:96
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-908
               
               
               Cow position:chr10:21737765-21737640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:98
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-911
               
               
               Cow position:chr10:32581197-32581325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:103
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-926
               
               
               Cow position:chr10:9799626-9799482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:110
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:783-931
               
               
               Cow position:chr10:42461006-42460858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:111
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-937
               
               
               Cow position:chr10:32319388-32319541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:783-939
               
               
               Cow position:chr10:4641305-4641461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-939
               
               
               Cow position:chr10:14970868-14971024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-942
               
               
               Cow position:chr10:55036400-55036558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:783-964
               
               
               Cow position:chr10:69936115-69935938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):127, 0

               
               
               Conread position:783-970
               
               
               Cow position:chr10:16552121-16551931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):136, 0

               
               
               Conread position:783-990
               
               
               Cow position:chr10:68096370-68096159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):102, 88

               
               
               Conread position:783-994
               
               
               Cow position:chr10:32830599-32830818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:783-1000
               
               
               Cow position:chr10:33868225-33868008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:171
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-1003
               
               
               Cow position:chr10:9155411-9155194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:147
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):143, 62

               
               
               Conread position:783-1004
               
               
               Cow position:chr10:25004873-25005093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:170
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:783-1004
               
               
               Cow position:chr10:42334638-42334425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):217, 45

               
               
               Conread position:783-1004
               
               
               Cow position:chr10:63626183-63626402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:783-1007
               
               
               Cow position:chr10:51950143-51949914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:172
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:783-1009
               
               
               Cow position:chr10:30270494-30270264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:783-1016
               
               
               Cow position:chr10:32009037-32009268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:783-1021
               
               
               Cow position:chr10:2243851-2244087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:189
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 21

               
               
               Conread position:783-1026
               
               
               Cow position:chr10:35024589-35024823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:783-1028
               
               
               Cow position:chr10:52738816-52739061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:190
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-1030
               
               
               Cow position:chr10:55973956-55974203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-1031
               
               
               Cow position:chr10:3817231-3817476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):221, 0

               
               
               Conread position:783-1035
               
               
               Cow position:chr10:25632878-25632628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):194, 0

               
               
               Conread position:783-1035
               
               
               Cow position:chr10:66773436-66773184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-1048
               
               
               Cow position:chr10:23649617-23649352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-1050
               
               
               Cow position:chr10:32699624-32699890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):161, 0

               
               
               Conread position:783-1053
               
               
               Cow position:chr10:62405812-62405542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-1056
               
               
               Cow position:chr10:46171373-46171644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:783-1059
               
               
               Cow position:chr10:14908213-14908494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:197
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):34, 157

               
               
               Conread position:783-1060
               
               
               Cow position:chr10:40105767-40106041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 177

               
               
               Conread position:783-1062
               
               
               Cow position:chr10:53158576-53158853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 20

               
               
               Conread position:783-1066
               
               
               Cow position:chr10:21426344-21426061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):273, 140

               
               
               Conread position:783-1068
               
               
               Cow position:chr10:20734415-20734697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:199
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):30, 142

               
               
               Conread position:783-1068
               
               
               Cow position:chr10:47083993-47084279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1069
               
               
               Cow position:chr10:17436228-17436514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:202
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):271, 194

               
               
               Conread position:783-1069
               
               
               Cow position:chr10:40347699-40347412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1070
               
               
               Cow position:chr10:66142443-66142731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1076
               
               
               Cow position:chr10:26292528-26292236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 40

               
               
               Conread position:783-1076
               
               
               Cow position:chr10:34335538-34335244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1077
               
               
               Cow position:chr10:27004621-27004326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1077
               
               
               Cow position:chr10:38941078-38941372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 235

               
               
               Conread position:783-1077
               
               
               Cow position:chr10:55010768-55011060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):265, 79

               
               
               Conread position:783-1082
               
               
               Cow position:chr10:19842630-19842930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1083
               
               
               Cow position:chr10:23412005-23412306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1083
               
               
               Cow position:chr10:48390797-48390500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):133, 124

               
               
               Conread position:783-1083
               
               
               Cow position:chr10:60362935-60363236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):136, 127

               
               
               Conread position:783-1084
               
               
               Cow position:chr10:1663008-1662706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1084
               
               
               Cow position:chr10:10585089-10585387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 18

               
               
               Conread position:783-1084
               
               
               Cow position:chr10:17492453-17492148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):170, 0

               
               
               Conread position:783-1084
               
               
               Cow position:chr10:28040603-28040302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 101

               
               
               Conread position:783-1084
               
               
               Cow position:chr10:29629309-29629007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1084
               
               
               Cow position:chr10:33556698-33556396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):160, 74

               
               
               Conread position:783-1084
               
               
               Cow position:chr10:40706459-40706758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):233, 8

               
               
               Conread position:783-1084
               
               
               Cow position:chr10:57554376-57554074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1087
               
               
               Cow position:chr10:19514191-19514493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 45

               
               
               Conread position:783-1089
               
               
               Cow position:chr10:1377534-1377228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):275, 259

               
               
               Conread position:783-1089
               
               
               Cow position:chr10:1380459-1380762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 51

               
               
               Conread position:783-1089
               
               
               Cow position:chr10:2117483-2117176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr10:2466932-2466636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):186, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr10:3507181-3506875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 272

               
               
               Conread position:783-1089
               
               
               Cow position:chr10:4500911-4501209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:220
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):271, 124

               
               
               Conread position:783-1089
               
               
               Cow position:chr10:6221204-6221511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr10:7279142-7278835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr10:8219462-8219775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):62, 193

               
               
               Conread position:783-1089
               
               
               Cow position:chr10:8293089-8293395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):273, 145

               
               
               Conread position:783-1089
               
               
               Cow position:chr10:8459186-8459492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 71

               
               
               Conread position:783-1089
               
               
               Cow position:chr10:8681583-8681890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr10:9682209-9681902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr10:14332882-14332575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr10:14806895-14807203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):194, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr10:14865814-14866113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr10:15489783-15490093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):254, 189

               
               
               Conread position:783-1089
               
               
               Cow position:chr10:16647350-16647044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):233, 141

               
               
               Conread position:783-1089
               
               
               Cow position:chr10:16929117-16929429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 178

               
               
               Conread position:783-1089
               
               
               Cow position:chr10:17222331-17222638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr10:17959324-17959631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr10:18106525-18106830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):270, 74

               
               
               Conread position:783-1089
               
               
               Cow position:chr10:19330543-19330852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr10:19491816-19491511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 45

               
               
               Conread position:783-1089
               
               
               Cow position:chr10:20111707-20112017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:215
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):191, 69

               
               
               Conread position:783-1089
               
               
               Cow position:chr10:21398262-21397955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr10:21489897-21490203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 210

               
               
               Conread position:783-1089
               
               
               Cow position:chr10:21729744-21729437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr10:22104439-22104746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):272, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr10:22250190-22250497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):270, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr10:22380676-22380982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 235

               
               
               Conread position:783-1089
               
               
               Cow position:chr10:23848925-23849232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr10:24294033-24293739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:219
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):60, 200

               
               
               Conread position:783-1089
               
               
               Cow position:chr10:25650460-25650155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 24

               
               
               Conread position:783-1089
               
               
               Cow position:chr10:26539949-26539644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 43

               
               
               Conread position:783-1089
               
               
               Cow position:chr10:26765508-26765814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 47

               
               
               Conread position:783-1089
               
               
               Cow position:chr10:26923330-26923023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr10:28030975-28030668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 18

               
               
               Conread position:783-1089
               
               
               Cow position:chr10:29106855-29106557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 151

               
               
               Conread position:783-1089
               
               
               Cow position:chr10:30682530-30682227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 47

               
               
               Conread position:783-1089
               
               
               Cow position:chr10:30688958-30689264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 109

               
               
               Conread position:783-1089
               
               
               Cow position:chr10:30719654-30719961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr10:31022096-31021789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr10:32086647-32086948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 177

               
               
               Conread position:783-1089
               
               
               Cow position:chr10:32281973-32282280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 176

               
               
               Conread position:783-1089
               
               
               Cow position:chr10:32364898-32365205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr10:32703721-32704028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):228, 222

               
               
               Conread position:783-1089
               
               
               Cow position:chr10:35824384-35824077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):275, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr10:36275217-36274910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr10:36879497-36879190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr10:37040964-37041271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr10:37126258-37125951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr10:37139345-37139038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr10:38542760-38542453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):258, 40

               
               
               Conread position:783-1089
               
               
               Cow position:chr10:38817866-38818173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr10:39038092-39037785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr10:39210732-39211039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr10:39441129-39441435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 263

               
               
               Conread position:783-1089
               
               
               Cow position:chr10:40375966-40376273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):273, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr10:40736646-40736948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):213, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr10:41140061-41139755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 155

               
               
               Conread position:783-1089
               
               
               Cow position:chr10:41160374-41160670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 165

               
               
               Conread position:783-1089
               
               
               Cow position:chr10:41386027-41385732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):31, 27

               
               
               Conread position:783-1089
               
               
               Cow position:chr10:41570063-41570366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):266, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr10:42744555-42744857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):232, 79

               
               
               Conread position:783-1089
               
               
               Cow position:chr10:42754030-42754325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr10:44705748-44705444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 81

               
               
               Conread position:783-1089
               
               
               Cow position:chr10:45647815-45648123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):194, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr10:46173231-46172925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 70

               
               
               Conread position:783-1089
               
               
               Cow position:chr10:46240995-46241301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 177

               
               
               Conread position:783-1089
               
               
               Cow position:chr10:47909576-47909881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):275, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr10:48170480-48170787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):181, 284

               
               
               Conread position:783-1089
               
               
               Cow position:chr10:48241598-48241291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr10:48374486-48374179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr10:49430603-49430924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 309

               
               
               Conread position:783-1089
               
               
               Cow position:chr10:50017403-50017098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):233, 186

               
               
               Conread position:783-1089
               
               
               Cow position:chr10:50314594-50314890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr10:50451516-50451823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):269, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr10:51558359-51558666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 18

               
               
               Conread position:783-1089
               
               
               Cow position:chr10:55096022-55096329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr10:57986736-57986430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):196, 88

               
               
               Conread position:783-1089
               
               
               Cow position:chr10:58687148-58687448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 13

               
               
               Conread position:783-1089
               
               
               Cow position:chr10:62775828-62776135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr10:64305067-64304760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1092
               
               
               Cow position:chr10:2847846-2848156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):307, 0

               
               
               Conread position:783-1092
               
               
               Cow position:chr10:31541607-31541909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 136

               
               
               Conread position:783-1095
               
               
               Cow position:chr10:325799-325493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 222

               
               
               Conread position:783-1106
               
               
               Cow position:chr10:49310994-49311310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:226
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):34, 143

               
               
               Conread position:783-1108
               
               
               Cow position:chr10:1720905-1720582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 106

               
               
               Conread position:783-1108
               
               
               Cow position:chr10:10722288-10721966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 178

               
               
               Conread position:783-1108
               
               
               Cow position:chr10:21450240-21449914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1112
               
               
               Cow position:chr10:24297544-24297214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1113
               
               
               Cow position:chr10:31526671-31526993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 40

               
               
               Conread position:783-1118
               
               
               Cow position:chr10:25563598-25563258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 312

               
               
               Conread position:784-917
               
               
               Cow position:chr10:5857507-5857640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:784-924
               
               
               Cow position:chr10:1972611-1972471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:113
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:784-1072
               
               
               Cow position:chr10:38724230-38724519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 50

               
               
               Conread position:784-1077
               
               
               Cow position:chr10:39876487-39876193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 102

               
               
               Conread position:784-1083
               
               
               Cow position:chr10:64301741-64301440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):270, 0

               
               
               Conread position:784-1084
               
               
               Cow position:chr10:19141649-19141348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):273, 0

               
               
               Conread position:784-1088
               
               
               Cow position:chr10:49145210-49145504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):270, 26

               
               
               Conread position:784-1089
               
               
               Cow position:chr10:6246075-6245774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 154

               
               
               Conread position:784-1089
               
               
               Cow position:chr10:7858370-7858072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):147, 0

               
               
               Conread position:784-1089
               
               
               Cow position:chr10:17544062-17543752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:217
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):178, 89

               
               
               Conread position:784-1089
               
               
               Cow position:chr10:18040956-18041247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 16

               
               
               Conread position:784-1089
               
               
               Cow position:chr10:19708724-19709032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:784-1089
               
               
               Cow position:chr10:20445777-20446075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):270, 90

               
               
               Conread position:784-1089
               
               
               Cow position:chr10:22344424-22344729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):270, 193

               
               
               Conread position:784-1089
               
               
               Cow position:chr10:25756183-25756484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):272, 229

               
               
               Conread position:784-1089
               
               
               Cow position:chr10:34666949-34666646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):270, 179

               
               
               Conread position:784-1089
               
               
               Cow position:chr10:37772839-37773145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):273, 0

               
               
               Conread position:784-1089
               
               
               Cow position:chr10:46194439-46194739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):270, 57

               
               
               Conread position:784-1089
               
               
               Cow position:chr10:65308325-65308631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):270, 0

               
               
               Conread position:784-1091
               
               
               Cow position:chr10:10147319-10147603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):270, 20

               
               
               Conread position:784-1108
               
               
               Cow position:chr10:10047574-10047255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 32

               
               
               Conread position:784-1108
               
               
               Cow position:chr10:27120949-27120626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):270, 298

               
               
               Conread position:784-1136
               
               
               Cow position:chr10:22529259-22528912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 105

               
               
               Conread position:785-939
               
               
               Cow position:chr10:47156898-47157049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:785-979
               
               
               Cow position:chr10:26670629-26670823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:785-1083
               
               
               Cow position:chr10:38520429-38520145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):269, 162

               
               
               Conread position:785-1084
               
               
               Cow position:chr10:5785273-5784976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):273, 194

               
               
               Conread position:785-1084
               
               
               Cow position:chr10:68014618-68014911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):11, 21

               
               
               Conread position:785-1089
               
               
               Cow position:chr10:2429556-2429258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):269, 61

               
               
               Conread position:785-1089
               
               
               Cow position:chr10:14846218-14846520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:199
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):269, 202

               
               
               Conread position:785-1089
               
               
               Cow position:chr10:19719912-19719607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):190, 175

               
               
               Conread position:785-1089
               
               
               Cow position:chr10:21080798-21081102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 27

               
               
               Conread position:785-1089
               
               
               Cow position:chr10:32560079-32560384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:210
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):11, 19

               
               
               Conread position:785-1089
               
               
               Cow position:chr10:37530840-37530544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:217
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):57, 52

               
               
               Conread position:785-1089
               
               
               Cow position:chr10:40566641-40566934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):14, 26

               
               
               Conread position:785-1089
               
               
               Cow position:chr10:52826666-52826363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):269, 143

               
               
               Conread position:785-1089
               
               
               Cow position:chr10:58938678-58938377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):269, 86

               
               
               Conread position:785-1090
               
               
               Cow position:chr10:38450866-38450559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):217, 92

               
               
               Conread position:785-1108
               
               
               Cow position:chr10:7895486-7895164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 40

               
               
               Conread position:785-1108
               
               
               Cow position:chr10:25255722-25256037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:220
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):136, 30

               
               
               Conread position:785-1108
               
               
               Cow position:chr10:51837754-51837432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):148, 53

               
               
               Conread position:786-1065
               
               
               Cow position:chr10:66402232-66402511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):268, 149

               
               
               Conread position:786-1091
               
               
               Cow position:chr10:40697713-40697410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:219
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):131, 85

               
               
               Conread position:786-1094
               
               
               Cow position:chr10:42643508-42643819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 105

               
               
               Conread position:786-1108
               
               
               Cow position:chr10:26732984-26732660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 0

               
               
               Conread position:787-1003
               
               
               Cow position:chr10:34433047-34433253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:148
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:787-1051
               
               
               Cow position:chr10:3495253-3494991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:790-1076
               
               
               Cow position:chr10:53127361-53127651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):258, 49

               
               
               Conread position:790-1108
               
               
               Cow position:chr10:47772399-47772702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):264, 76

               
               
               Conread position:792-1088
               
               
               Cow position:chr10:56688094-56687797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 8

               
               
               Conread position:792-1108
               
               
               Cow position:chr10:24974676-24974372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):262, 58

               
               
               Conread position:793-1089
               
               
               Cow position:chr10:20373455-20373165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:213
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):21, 14

               
               
               Conread position:795-1089
               
               
               Cow position:chr10:57406434-57406145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:199
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):258, 61

               
               
               Conread position:796-1084
               
               
               Cow position:chr10:45670908-45670638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:203
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):262, 75

               
               
               Conread position:796-1089
               
               
               Cow position:chr10:9581101-9580808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):259, 269

               
               
               Conread position:796-1089
               
               
               Cow position:chr10:20381015-20380722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):164, 43

               
               
               Conread position:796-1089
               
               
               Cow position:chr10:65791333-65791040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):258, 197

               
               
               Conread position:797-1076
               
               
               Cow position:chr10:20267495-20267216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):257, 140

               
               
               Conread position:797-1089
               
               
               Cow position:chr10:36230478-36230762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:204
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):257, 117

               
               
               Conread position:797-1125
               
               
               Cow position:chr10:65733351-65733676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:229
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):26, 108

               
               
               Conread position:798-973
               
               
               Cow position:chr10:42635691-42635867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:798-1089
               
               
               Cow position:chr10:68825181-68824890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):29, 16

               
               
               Conread position:800-1076
               
               
               Cow position:chr10:48743022-48742747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):22, 40

               
               
               Conread position:800-1089
               
               
               Cow position:chr10:11110260-11110535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:207
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:800-1089
               
               
               Cow position:chr10:60704052-60703762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):233, 193

               
               
               Conread position:801-1089
               
               
               Cow position:chr10:64287390-64287108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):140, 31

               
               
               Conread position:802-977
               
               
               Cow position:chr10:35039979-35040154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:802-1004
               
               
               Cow position:chr10:47591824-47591622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:145
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:802-1029
               
               
               Cow position:chr10:19894028-19894245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:802-1034
               
               
               Cow position:chr10:872994-873237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):102, 48

               
               
               Conread position:802-1055
               
               
               Cow position:chr10:9446314-9446064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 74

               
               
               Conread position:802-1068
               
               
               Cow position:chr10:37509445-37509712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):7, 13

               
               
               Conread position:802-1076
               
               
               Cow position:chr10:14976268-14976542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:189
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):36, 80

               
               
               Conread position:802-1084
               
               
               Cow position:chr10:43848141-43848411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:802-1084
               
               
               Cow position:chr10:55098952-55098683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:205
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):256, 38

               
               
               Conread position:802-1089
               
               
               Cow position:chr10:16586083-16586370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):252, 189

               
               
               Conread position:802-1089
               
               
               Cow position:chr10:19738079-19738365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:197
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):245, 84

               
               
               Conread position:802-1089
               
               
               Cow position:chr10:39849247-39848957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:802-1089
               
               
               Cow position:chr10:50198961-50199248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:206
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):139, 122

               
               
               Conread position:802-1089
               
               
               Cow position:chr10:53059329-53059044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):251, 86

               
               
               Conread position:802-1089
               
               
               Cow position:chr10:58600587-58600864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):256, 28

               
               
               Conread position:802-1108
               
               
               Cow position:chr10:21710257-21709951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 14

               
               
               Conread position:802-1108
               
               
               Cow position:chr10:53337304-53337611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):140, 209

               
               
               Conread position:802-1108
               
               
               Cow position:chr10:61312471-61312769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):252, 54

               
               
               Conread position:802-1120
               
               
               Cow position:chr10:38843141-38843459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):254, 166

               
               
               Conread position:804-1077
               
               
               Cow position:chr10:40140262-40139988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):250, 0

               
               
               Conread position:804-1108
               
               
               Cow position:chr10:3181574-3181271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):230, 169

               
               
               Conread position:805-1076
               
               
               Cow position:chr10:32827723-32827987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):235, 52

               
               
               Conread position:805-1084
               
               
               Cow position:chr10:19390613-19390331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:805-1089
               
               
               Cow position:chr10:28528437-28528157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:203
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):217, 61

               
               
               Conread position:805-1089
               
               
               Cow position:chr10:29812728-29812448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):233, 172

               
               
               Conread position:806-1083
               
               
               Cow position:chr10:1186168-1185901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):210, 101

               
               
               Conread position:806-1089
               
               
               Cow position:chr10:21432222-21432510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:195
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):158, 51

               
               
               Conread position:806-1089
               
               
               Cow position:chr10:23913869-23913588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 80

               
               
               Conread position:807-1069
               
               
               Cow position:chr10:33219203-33218946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):247, 7

               
               
               Conread position:807-1089
               
               
               Cow position:chr10:19880881-19880599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):115, 50

               
               
               Conread position:809-1089
               
               
               Cow position:chr10:31375427-31375150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 164

               
               
               Conread position:810-1001
               
               
               Cow position:chr10:14857294-14857484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:810-1089
               
               
               Cow position:chr10:20515899-20516178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):244, 214

               
               
               Conread position:811-1004
               
               
               Cow position:chr10:35848546-35848738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:132
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):148, 0

               
               
               Conread position:811-1077
               
               
               Cow position:chr10:278367-278103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):243, 14

               
               
               Conread position:812-1094
               
               
               Cow position:chr10:44669676-44669394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):17, 13

               
               
               Conread position:813-1083
               
               
               Cow position:chr10:10754261-10753992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:813-1089
               
               
               Cow position:chr10:28948487-28948746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):242, 44

               
               
               Conread position:814-960
               
               
               Cow position:chr10:42689906-42689760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:115
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:814-992
               
               
               Cow position:chr10:41653700-41653523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):167, 43

               
               
               Conread position:814-1052
               
               
               Cow position:chr10:38272980-38273218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:814-1084
               
               
               Cow position:chr10:20397915-20398175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):157, 77

               
               
               Conread position:814-1106
               
               
               Cow position:chr10:6002614-6002321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):225, 116

               
               
               Conread position:815-1031
               
               
               Cow position:chr10:22907147-22906936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:817-1085
               
               
               Cow position:chr10:63812361-63812091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):246, 0

               
               
               Conread position:817-1089
               
               
               Cow position:chr10:25630873-25631132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:818-1073
               
               
               Cow position:chr10:21414730-21414474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):236, 0

               
               
               Conread position:818-1081
               
               
               Cow position:chr10:42231483-42231740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:818-1089
               
               
               Cow position:chr10:43080755-43081027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):236, 0

               
               
               Conread position:820-1089
               
               
               Cow position:chr10:45978542-45978278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):234, 20

               
               
               Conread position:822-1077
               
               
               Cow position:chr10:128595-128849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:190
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):223, 0

               
               
               Conread position:822-1089
               
               
               Cow position:chr10:23866822-23866555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):195, 232

               
               
               Conread position:822-1089
               
               
               Cow position:chr10:29174222-29174490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):232, 0

               
               
               Conread position:822-1108
               
               
               Cow position:chr10:9609378-9609091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):104, 255

               
               
               Conread position:823-1084
               
               
               Cow position:chr10:35551693-35551948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):208, 112

               
               
               Conread position:823-1106
               
               
               Cow position:chr10:11000368-11000639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:190
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:824-1089
               
               
               Cow position:chr10:10172902-10173168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):230, 0

               
               
               Conread position:824-1108
               
               
               Cow position:chr10:46225833-46226109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:825-982
               
               
               Cow position:chr10:38866205-38866362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:112
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:825-1089
               
               
               Cow position:chr10:42213875-42214141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):221, 0

               
               
               Conread position:826-1084
               
               
               Cow position:chr10:63954507-63954765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):228, 54

               
               
               Conread position:828-1077
               
               
               Cow position:chr10:42388802-42388553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):94, 82

               
               
               Conread position:832-1035
               
               
               Cow position:chr10:17922062-17922263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:141
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):89, 75

               
               
               Conread position:832-1074
               
               
               Cow position:chr10:40580808-40581045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:835-1084
               
               
               Cow position:chr10:38942637-38942887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:186
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):219, 0

               
               
               Conread position:835-1089
               
               
               Cow position:chr10:1979965-1979715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):219, 52

               
               
               Conread position:835-1089
               
               
               Cow position:chr10:6253816-6253564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):221, 12

               
               
               Conread position:841-1089
               
               
               Cow position:chr10:25692664-25692913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):187, 236

               
               
               Conread position:844-1083
               
               
               Cow position:chr10:41772461-41772220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):77, 66

               
               
               Conread position:844-1095
               
               
               Cow position:chr10:56377327-56377076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:179
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):191, 156

               
               
               Conread position:844-1106
               
               
               Cow position:chr10:2733582-2733326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:181
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):210, 48

               
               
               Conread position:846-1089
               
               
               Cow position:chr10:49503955-49504199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):208, 0

               
               
               Conread position:847-1035
               
               
               Cow position:chr10:57473280-57473092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:848-1077
               
               
               Cow position:chr10:41561452-41561222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):206, 0

               
               
               Conread position:850-1084
               
               
               Cow position:chr10:11623696-11623465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:175
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):204, 110

               
               
               Conread position:850-1084
               
               
               Cow position:chr10:36466745-36466506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:176
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:850-1089
               
               
               Cow position:chr10:39970968-39971208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:183
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):204, 0

               
               
               Conread position:851-1077
               
               
               Cow position:chr10:58810752-58810527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):9, 154

               
               
               Conread position:854-1035
               
               
               Cow position:chr10:44865269-44865446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):42, 16

               
               
               Conread position:854-1089
               
               
               Cow position:chr10:23934791-23935017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:182
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):200, 45

               
               
               Conread position:857-1087
               
               
               Cow position:chr10:37914390-37914160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:181
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):197, 14

               
               
               Conread position:857-1089
               
               
               Cow position:chr10:2612121-2612353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:185
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:857-1089
               
               
               Cow position:chr10:26569737-26569504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):197, 0

               
               
               Conread position:857-1089
               
               
               Cow position:chr10:41405409-41405642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:169
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):197, 0

               
               
               Conread position:860-1084
               
               
               Cow position:chr10:40149102-40148878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:173
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):194, 213

               
               
               Conread position:860-1089
               
               
               Cow position:chr10:54960693-54960465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:861-1069
               
               
               Cow position:chr10:25013887-25013677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:861-1108
               
               
               Cow position:chr10:59840743-59840490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):193, 0

               
               
               Conread position:864-1089
               
               
               Cow position:chr10:44764728-44764954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):190, 0

               
               
               Conread position:867-1062
               
               
               Cow position:chr10:185092-185286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:871-1089
               
               
               Cow position:chr10:64347018-64347236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):45, 36

               
               
               Conread position:874-1001
               
               
               Cow position:chr10:20453137-20453264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:101
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:874-1089
               
               
               Cow position:chr10:7260220-7260004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:166
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):180, 0

               
               
               Conread position:874-1089
               
               
               Cow position:chr10:26956992-26957208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:167
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):180, 0

               
               
               Conread position:874-1089
               
               
               Cow position:chr10:40643065-40643284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):67, 55

               
               
               Conread position:874-1108
               
               
               Cow position:chr10:54928867-54928630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:875-1056
               
               
               Cow position:chr10:51864271-51864095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:875-1089
               
               
               Cow position:chr10:38154200-38154415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):179, 93

               
               
               Conread position:876-1077
               
               
               Cow position:chr10:54751998-54752203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):45, 31

               
               
               Conread position:878-1094
               
               
               Cow position:chr10:11217138-11216920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):176, 0

               
               
               Conread position:879-1086
               
               
               Cow position:chr10:24309137-24308930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:164
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):177, 46

               
               
               Conread position:880-1082
               
               
               Cow position:chr10:45768824-45769026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):166, 90

               
               
               Conread position:880-1083
               
               
               Cow position:chr10:24757179-24757384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:154
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):8, 32

               
               
               Conread position:880-1089
               
               
               Cow position:chr10:22646063-22646266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):8, 38

               
               
               Conread position:880-1089
               
               
               Cow position:chr10:45661386-45661596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):174, 0

               
               
               Conread position:881-1089
               
               
               Cow position:chr10:51780281-51780082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):173, 11

               
               
               Conread position:883-1089
               
               
               Cow position:chr10:14982902-14982695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):159, 51

               
               
               Conread position:884-1089
               
               
               Cow position:chr10:54376874-54376668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):27, 31

               
               
               Conread position:885-1089
               
               
               Cow position:chr10:326156-326356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):169, 120

               
               
               Conread position:890-1089
               
               
               Cow position:chr10:22579747-22579551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):10, 80

               
               
               Conread position:891-1089
               
               
               Cow position:chr10:49914677-49914493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):25, 107

               
               
               Conread position:892-1089
               
               
               Cow position:chr10:66496334-66496136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:144
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):162, 0

               
               
               Conread position:896-1089
               
               
               Cow position:chr10:31733753-31733948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:145
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):158, 100

               
               
               Conread position:896-1089
               
               
               Cow position:chr10:35353996-35353804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):65, 76

               
               
               Conread position:897-1077
               
               
               Cow position:chr10:44292183-44292003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:126
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):157, 116

               
               
               Conread position:897-1089
               
               
               Cow position:chr10:20388730-20388538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):157, 37

               
               
               Conread position:899-1089
               
               
               Cow position:chr10:14421963-14422154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):155, 0

               
               
               Conread position:911-1077
               
               
               Cow position:chr10:9799457-9799289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:131
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:914-1077
               
               
               Cow position:chr10:44785393-44785559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:914-1089
               
               
               Cow position:chr10:76185-76364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):97, 119

               
               
               Conread position:914-1089
               
               
               Cow position:chr10:17654093-17653917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):10, 46

               
               
               Conread position:914-1091
               
               
               Cow position:chr10:48385135-48384957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:135
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):140, 0

               
               
               Conread position:916-1083
               
               
               Cow position:chr10:42460840-42460671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):136, 69

               
               
               Conread position:916-1118
               
               
               Cow position:chr10:22618191-22617989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):138, 150

               
               
               Conread position:919-1108
               
               
               Cow position:chr10:2516134-2516321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):135, 51

               
               
               Conread position:922-1089
               
               
               Cow position:chr10:21737578-21737410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):132, 0

               
               
               Conread position:925-1089
               
               
               Cow position:chr10:39811410-39811245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):129, 0

               
               
               Conread position:926-1108
               
               
               Cow position:chr10:60028827-60029007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):165, 127

               
               
               Conread position:928-1089
               
               
               Cow position:chr10:5857925-5858088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:928-1089
               
               
               Cow position:chr10:15888088-15888248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):130, 50

               
               
               Conread position:928-1089
               
               
               Cow position:chr10:19523041-19522887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:122
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):129, 73

               
               
               Conread position:928-1089
               
               
               Cow position:chr10:32581570-32581731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):126, 90

               
               
               Conread position:932-1089
               
               
               Cow position:chr10:7498027-7497869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:125
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:937-1089
               
               
               Cow position:chr10:44114187-44114034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:942-1089
               
               
               Cow position:chr10:4641963-4642111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:116
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:945-1089
               
               
               Cow position:chr10:6538905-6539049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):112, 73

               
               
               Conread position:945-1089
               
               
               Cow position:chr10:37909029-37908884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):97, 120

               
               
               Conread position:948-1089
               
               
               Cow position:chr10:14621475-14621617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:111
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:952-1089
               
               
               Cow position:chr10:34680198-34680337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:953-1070
               
               
               Cow position:chr10:34667996-34667877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:98
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:962-1089
               
               
               Cow position:chr10:3526705-3526576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:962-1089
               
               
               Cow position:chr10:3984250-3984378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:102
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):7, 12

               
               
               Conread position:964-1077
               
               
               Cow position:chr10:31249822-31249936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:94
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:964-1089
               
               
               Cow position:chr10:55930622-55930748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:102
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:973-1089
               
               
               Cow position:chr10:45484855-45484738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:97
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:760-1089
               
               
               Cow position:chr11:52846050-52846378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 225

               
               
               Conread position:767-1084
               
               
               Cow position:chr11:29616710-29616398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):286, 30

               
               
               Conread position:776-1108
               
               
               Cow position:chr11:38640541-38640874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):278, 0

               
               
               Conread position:780-1003
               
               
               Cow position:chr11:28422442-28422662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:782-1004
               
               
               Cow position:chr11:9715502-9715283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):28, 17

               
               
               Conread position:782-1031
               
               
               Cow position:chr11:58819979-58820229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):10, 170

               
               
               Conread position:782-1060
               
               
               Cow position:chr11:35231221-35231495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):28, 224

               
               
               Conread position:782-1069
               
               
               Cow position:chr11:43845761-43845473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):27, 34

               
               
               Conread position:782-1069
               
               
               Cow position:chr11:84740673-84740958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:197
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):28, 33

               
               
               Conread position:782-1076
               
               
               Cow position:chr11:66739621-66739329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):272, 191

               
               
               Conread position:782-1077
               
               
               Cow position:chr11:41261332-41261036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):272, 0

               
               
               Conread position:782-1084
               
               
               Cow position:chr11:1505400-1505098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):272, 37

               
               
               Conread position:782-1084
               
               
               Cow position:chr11:3085612-3085314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:193
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):141, 100

               
               
               Conread position:782-1084
               
               
               Cow position:chr11:39600266-39599963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 21

               
               
               Conread position:782-1088
               
               
               Cow position:chr11:69167848-69168153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):275, 150

               
               
               Conread position:782-1089
               
               
               Cow position:chr11:26534436-26534737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 43

               
               
               Conread position:782-1089
               
               
               Cow position:chr11:41101518-41101821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:213
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):197, 59

               
               
               Conread position:782-1089
               
               
               Cow position:chr11:50266988-50267293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):45, 192

               
               
               Conread position:782-1089
               
               
               Cow position:chr11:63390883-63390575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):272, 0

               
               
               Conread position:782-1092
               
               
               Cow position:chr11:48740329-48740026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:209
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):155, 32

               
               
               Conread position:782-1096
               
               
               Cow position:chr11:11256668-11256979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):272, 205

               
               
               Conread position:783-885
               
               
               Cow position:chr11:28667131-28667233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:103
               
               
               Alignm identity:87
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-888
               
               
               Cow position:chr11:23882633-23882738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:85
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-905
               
               
               Cow position:chr11:39585124-39585002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:98
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-908
               
               
               Cow position:chr11:30104594-30104469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:98
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-908
               
               
               Cow position:chr11:73136931-73137055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:783-923
               
               
               Cow position:chr11:14260451-14260312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:110
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:783-931
               
               
               Cow position:chr11:84386209-84386063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:783-949
               
               
               Cow position:chr11:45549741-45549907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):9, 146

               
               
               Conread position:783-954
               
               
               Cow position:chr11:32402262-32402091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-960
               
               
               Cow position:chr11:47736948-47736771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-974
               
               
               Cow position:chr11:31892550-31892741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):139, 146

               
               
               Conread position:783-979
               
               
               Cow position:chr11:8201134-8200938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:152
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-979
               
               
               Cow position:chr11:38701969-38702165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-993
               
               
               Cow position:chr11:66945737-66945528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:165
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:783-999
               
               
               Cow position:chr11:12411253-12411474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:158
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):156, 204

               
               
               Conread position:783-1000
               
               
               Cow position:chr11:85731368-85731156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:783-1001
               
               
               Cow position:chr11:82146048-82145842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:783-1004
               
               
               Cow position:chr11:17833978-17833760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:165
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:783-1004
               
               
               Cow position:chr11:33042151-33041937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):85, 136

               
               
               Conread position:783-1010
               
               
               Cow position:chr11:46781734-46781507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:168
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-1016
               
               
               Cow position:chr11:15987846-15988079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-1020
               
               
               Cow position:chr11:7228851-7229086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:175
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):167, 0

               
               
               Conread position:783-1024
               
               
               Cow position:chr11:4053714-4053480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:175
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:783-1030
               
               
               Cow position:chr11:38021879-38021633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:185
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):242, 0

               
               
               Conread position:783-1050
               
               
               Cow position:chr11:56652850-56652580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:783-1056
               
               
               Cow position:chr11:18123690-18123419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:783-1060
               
               
               Cow position:chr11:17279986-17279711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):74, 136

               
               
               Conread position:783-1061
               
               
               Cow position:chr11:15127412-15127687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:783-1062
               
               
               Cow position:chr11:44515176-44514896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 18

               
               
               Conread position:783-1066
               
               
               Cow position:chr11:77747463-77747187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:186
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):270, 58

               
               
               Conread position:783-1067
               
               
               Cow position:chr11:38068866-38069148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:191
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):235, 0

               
               
               Conread position:783-1074
               
               
               Cow position:chr11:42372400-42372691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 198

               
               
               Conread position:783-1076
               
               
               Cow position:chr11:14469123-14469419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):134, 72

               
               
               Conread position:783-1076
               
               
               Cow position:chr11:57625579-57625298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 125

               
               
               Conread position:783-1076
               
               
               Cow position:chr11:83287133-83286838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1077
               
               
               Cow position:chr11:3495640-3495935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1077
               
               
               Cow position:chr11:27659847-27660126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:203
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):271, 59

               
               
               Conread position:783-1077
               
               
               Cow position:chr11:35542471-35542176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1077
               
               
               Cow position:chr11:47973254-47972960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):270, 92

               
               
               Conread position:783-1077
               
               
               Cow position:chr11:48981893-48982182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:214
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):133, 55

               
               
               Conread position:783-1077
               
               
               Cow position:chr11:75553189-75552897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):46, 130

               
               
               Conread position:783-1081
               
               
               Cow position:chr11:27056113-27055818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:213
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):254, 86

               
               
               Conread position:783-1083
               
               
               Cow position:chr11:12317473-12317172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1083
               
               
               Cow position:chr11:26122324-26122022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:783-1083
               
               
               Cow position:chr11:52657059-52656766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:201
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):40, 13

               
               
               Conread position:783-1083
               
               
               Cow position:chr11:53308298-53307996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:207
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):79, 12

               
               
               Conread position:783-1083
               
               
               Cow position:chr11:75402904-75402608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 30

               
               
               Conread position:783-1084
               
               
               Cow position:chr11:4267556-4267256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 180

               
               
               Conread position:783-1084
               
               
               Cow position:chr11:6343058-6343359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 177

               
               
               Conread position:783-1084
               
               
               Cow position:chr11:27922390-27922693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):278, 0

               
               
               Conread position:783-1084
               
               
               Cow position:chr11:33000479-33000779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 74

               
               
               Conread position:783-1084
               
               
               Cow position:chr11:45107438-45107743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):209, 0

               
               
               Conread position:783-1084
               
               
               Cow position:chr11:63653082-63652776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:218
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):93, 136

               
               
               Conread position:783-1087
               
               
               Cow position:chr11:40403162-40402852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):236, 0

               
               
               Conread position:783-1088
               
               
               Cow position:chr11:8266409-8266718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 18

               
               
               Conread position:783-1089
               
               
               Cow position:chr11:417859-417569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 74

               
               
               Conread position:783-1089
               
               
               Cow position:chr11:1493248-1492944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 74

               
               
               Conread position:783-1089
               
               
               Cow position:chr11:2534196-2534503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr11:2568079-2567779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr11:4024744-4024445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):133, 45

               
               
               Conread position:783-1089
               
               
               Cow position:chr11:5482847-5482542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):133, 37

               
               
               Conread position:783-1089
               
               
               Cow position:chr11:7121366-7121059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr11:8245762-8246069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 21

               
               
               Conread position:783-1089
               
               
               Cow position:chr11:9248647-9248345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:206
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):232, 98

               
               
               Conread position:783-1089
               
               
               Cow position:chr11:10699149-10698842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr11:10850718-10851018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):263, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr11:10958428-10958733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 177

               
               
               Conread position:783-1089
               
               
               Cow position:chr11:11990586-11990901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 18

               
               
               Conread position:783-1089
               
               
               Cow position:chr11:12354295-12353988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr11:15835518-15835816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 141

               
               
               Conread position:783-1089
               
               
               Cow position:chr11:17548755-17549062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):270, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr11:18146947-18146642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 149

               
               
               Conread position:783-1089
               
               
               Cow position:chr11:18920989-18920682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr11:19061477-19061170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr11:19072796-19073096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):224, 17

               
               
               Conread position:783-1089
               
               
               Cow position:chr11:19099886-19099581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):133, 62

               
               
               Conread position:783-1089
               
               
               Cow position:chr11:20731625-20731318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr11:24395931-24396239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr11:25564353-25564657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):233, 186

               
               
               Conread position:783-1089
               
               
               Cow position:chr11:25809146-25808843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):275, 198

               
               
               Conread position:783-1089
               
               
               Cow position:chr11:27725304-27724997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):275, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr11:28125112-28125419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr11:28227182-28226874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr11:28693372-28693066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 68

               
               
               Conread position:783-1089
               
               
               Cow position:chr11:30201095-30200789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 65

               
               
               Conread position:783-1089
               
               
               Cow position:chr11:30928979-30929286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr11:31628122-31628420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:211
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):208, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr11:31929063-31929354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 127

               
               
               Conread position:783-1089
               
               
               Cow position:chr11:32454658-32454958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 66

               
               
               Conread position:783-1089
               
               
               Cow position:chr11:32478215-32477908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):270, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr11:33602031-33601721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):212, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr11:35738745-35738438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr11:38574886-38574581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 177

               
               
               Conread position:783-1089
               
               
               Cow position:chr11:41168097-41167790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr11:41177525-41177823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):59, 98

               
               
               Conread position:783-1089
               
               
               Cow position:chr11:41313893-41314200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr11:43511374-43511071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 235

               
               
               Conread position:783-1089
               
               
               Cow position:chr11:43992183-43991878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):275, 194

               
               
               Conread position:783-1089
               
               
               Cow position:chr11:44154481-44154174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 18

               
               
               Conread position:783-1089
               
               
               Cow position:chr11:44254671-44254978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 18

               
               
               Conread position:783-1089
               
               
               Cow position:chr11:44516572-44516265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 18

               
               
               Conread position:783-1089
               
               
               Cow position:chr11:44580633-44580329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):143, 149

               
               
               Conread position:783-1089
               
               
               Cow position:chr11:48168464-48168169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr11:49037801-49037493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):75, 128

               
               
               Conread position:783-1089
               
               
               Cow position:chr11:49171902-49171594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr11:50511075-50510768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr11:50834161-50833855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 67

               
               
               Conread position:783-1089
               
               
               Cow position:chr11:53429424-53429118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 17

               
               
               Conread position:783-1089
               
               
               Cow position:chr11:54728061-54728368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):187, 17

               
               
               Conread position:783-1089
               
               
               Cow position:chr11:56462959-56463266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr11:58050323-58050021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 30

               
               
               Conread position:783-1089
               
               
               Cow position:chr11:58136314-58136621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr11:58139304-58139609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):138, 127

               
               
               Conread position:783-1089
               
               
               Cow position:chr11:59004958-59004655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:207
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):254, 79

               
               
               Conread position:783-1089
               
               
               Cow position:chr11:59601207-59601501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):177, 63

               
               
               Conread position:783-1089
               
               
               Cow position:chr11:60223089-60222782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr11:60757377-60757071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 213

               
               
               Conread position:783-1089
               
               
               Cow position:chr11:61398018-61397717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):275, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr11:61848136-61847829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr11:63861039-63860739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 89

               
               
               Conread position:783-1089
               
               
               Cow position:chr11:64353725-64353418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr11:65281616-65281923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr11:67296411-67296103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 18

               
               
               Conread position:783-1089
               
               
               Cow position:chr11:67453252-67453559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr11:67920735-67920434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):267, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr11:71332099-71332405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):133, 127

               
               
               Conread position:783-1089
               
               
               Cow position:chr11:72313045-72313352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):133, 124

               
               
               Conread position:783-1089
               
               
               Cow position:chr11:72365785-72366092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr11:72368650-72368957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr11:73799101-73798794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr11:74928397-74928707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):136, 74

               
               
               Conread position:783-1089
               
               
               Cow position:chr11:76566047-76566368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:215
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):85, 104

               
               
               Conread position:783-1089
               
               
               Cow position:chr11:78778499-78778211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:223
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr11:79749285-79748978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr11:83284492-83284797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 144

               
               
               Conread position:783-1089
               
               
               Cow position:chr11:84966711-84967012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr11:85391248-85390946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:783-1094
               
               
               Cow position:chr11:58398930-58399240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:222
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):107, 88

               
               
               Conread position:783-1094
               
               
               Cow position:chr11:76371468-76371158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 155

               
               
               Conread position:783-1094
               
               
               Cow position:chr11:84773767-84774073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 47

               
               
               Conread position:783-1095
               
               
               Cow position:chr11:35142734-35142423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):270, 137

               
               
               Conread position:783-1095
               
               
               Cow position:chr11:38832881-38832568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 310

               
               
               Conread position:783-1108
               
               
               Cow position:chr11:8444390-8444065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 309

               
               
               Conread position:783-1108
               
               
               Cow position:chr11:9079967-9079640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):259, 190

               
               
               Conread position:783-1108
               
               
               Cow position:chr11:10093480-10093797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 30

               
               
               Conread position:783-1108
               
               
               Cow position:chr11:10129148-10128842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 124

               
               
               Conread position:783-1108
               
               
               Cow position:chr11:26550079-26550399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 74

               
               
               Conread position:783-1108
               
               
               Cow position:chr11:39151196-39151520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):287, 71

               
               
               Conread position:783-1108
               
               
               Cow position:chr11:80472358-80472034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):43, 98

               
               
               Conread position:783-1108
               
               
               Cow position:chr11:81577306-81576982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):275, 100

               
               
               Conread position:783-1122
               
               
               Cow position:chr11:11591581-11591914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):314, 73

               
               
               Conread position:784-965
               
               
               Cow position:chr11:13063011-13062830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:145
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:784-1044
               
               
               Cow position:chr11:7320750-7321002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:784-1056
               
               
               Cow position:chr11:53690216-53690478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):251, 12

               
               
               Conread position:784-1077
               
               
               Cow position:chr11:31904367-31904658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):28, 15

               
               
               Conread position:784-1083
               
               
               Cow position:chr11:7324104-7324406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 292

               
               
               Conread position:784-1084
               
               
               Cow position:chr11:4205779-4206079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):248, 113

               
               
               Conread position:784-1084
               
               
               Cow position:chr11:7330188-7330482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):273, 160

               
               
               Conread position:784-1084
               
               
               Cow position:chr11:7379170-7379470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:207
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):248, 160

               
               
               Conread position:784-1088
               
               
               Cow position:chr11:10215009-10214708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 140

               
               
               Conread position:784-1088
               
               
               Cow position:chr11:75511594-75511288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):252, 0

               
               
               Conread position:784-1089
               
               
               Cow position:chr11:3229720-3230017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):270, 70

               
               
               Conread position:784-1089
               
               
               Cow position:chr11:17105091-17104786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 17

               
               
               Conread position:784-1089
               
               
               Cow position:chr11:27834160-27833851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:213
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:784-1089
               
               
               Cow position:chr11:29613990-29614296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):270, 0

               
               
               Conread position:784-1089
               
               
               Cow position:chr11:29663451-29663146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):273, 239

               
               
               Conread position:784-1089
               
               
               Cow position:chr11:36930936-36930626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):53, 21

               
               
               Conread position:784-1089
               
               
               Cow position:chr11:44233034-44233338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):270, 16

               
               
               Conread position:784-1089
               
               
               Cow position:chr11:62224857-62225162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 75

               
               
               Conread position:784-1108
               
               
               Cow position:chr11:41600090-41599765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):270, 315

               
               
               Conread position:784-1108
               
               
               Cow position:chr11:67954539-67954198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:244
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):98, 203

               
               
               Conread position:784-1118
               
               
               Cow position:chr11:16230056-16229713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 88

               
               
               Conread position:784-1119
               
               
               Cow position:chr11:7374047-7374377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 105

               
               
               Conread position:785-977
               
               
               Cow position:chr11:72484965-72485160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):167, 45

               
               
               Conread position:785-1000
               
               
               Cow position:chr11:42309871-42309656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):11, 16

               
               
               Conread position:785-1004
               
               
               Cow position:chr11:72793926-72793722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:160
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:785-1010
               
               
               Cow position:chr11:77748370-77748602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):125, 0

               
               
               Conread position:785-1042
               
               
               Cow position:chr11:50136236-50135980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:190
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:785-1069
               
               
               Cow position:chr11:62871567-62871285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:193
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):7, 31

               
               
               Conread position:785-1077
               
               
               Cow position:chr11:3682235-3681950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):127, 20

               
               
               Conread position:785-1087
               
               
               Cow position:chr11:260546-260246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):270, 86

               
               
               Conread position:785-1089
               
               
               Cow position:chr11:7680563-7680867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):269, 161

               
               
               Conread position:785-1089
               
               
               Cow position:chr11:9707747-9708052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):269, 0

               
               
               Conread position:785-1089
               
               
               Cow position:chr11:40486757-40487060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):177, 269

               
               
               Conread position:785-1089
               
               
               Cow position:chr11:59871416-59871719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):269, 72

               
               
               Conread position:785-1098
               
               
               Cow position:chr11:36765265-36765583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:195
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):70, 19

               
               
               Conread position:785-1108
               
               
               Cow position:chr11:22934015-22933700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:227
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):223, 28

               
               
               Conread position:786-904
               
               
               Cow position:chr11:13049352-13049235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:93
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:786-1089
               
               
               Cow position:chr11:67167263-67166961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):271, 71

               
               
               Conread position:786-1089
               
               
               Cow position:chr11:81338788-81338492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:212
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):268, 124

               
               
               Conread position:787-1042
               
               
               Cow position:chr11:66568651-66568903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):7, 149

               
               
               Conread position:790-1003
               
               
               Cow position:chr11:28753586-28753796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:152
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):155, 20

               
               
               Conread position:792-1080
               
               
               Cow position:chr11:4032830-4032548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):262, 11

               
               
               Conread position:793-1075
               
               
               Cow position:chr11:21477217-21477494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):62, 57

               
               
               Conread position:793-1088
               
               
               Cow position:chr11:26785853-26786143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:213
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):35, 8

               
               
               Conread position:794-1085
               
               
               Cow position:chr11:7380694-7380969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:214
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):259, 6

               
               
               Conread position:795-986
               
               
               Cow position:chr11:37676810-37677000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:149
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):186, 0

               
               
               Conread position:796-1076
               
               
               Cow position:chr11:33688409-33688128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 112

               
               
               Conread position:796-1089
               
               
               Cow position:chr11:45652303-45652009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:198
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):147, 135

               
               
               Conread position:796-1089
               
               
               Cow position:chr11:60824385-60824678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):237, 253

               
               
               Conread position:797-1077
               
               
               Cow position:chr11:52462893-52463174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:199
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):218, 65

               
               
               Conread position:797-1089
               
               
               Cow position:chr11:57754593-57754314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:204
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):245, 95

               
               
               Conread position:798-1091
               
               
               Cow position:chr11:5982719-5983013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 276

               
               
               Conread position:800-1107
               
               
               Cow position:chr11:67599198-67599501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:227
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):23, 51

               
               
               Conread position:801-1089
               
               
               Cow position:chr11:21729401-21729116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 99

               
               
               Conread position:801-1089
               
               
               Cow position:chr11:28393489-28393781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:208
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:801-1094
               
               
               Cow position:chr11:73513746-73513464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):253, 88

               
               
               Conread position:802-1035
               
               
               Cow position:chr11:29012838-29013069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):150, 119

               
               
               Conread position:802-1077
               
               
               Cow position:chr11:56917390-56917115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 11

               
               
               Conread position:802-1081
               
               
               Cow position:chr11:78703538-78703815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:185
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):253, 40

               
               
               Conread position:802-1084
               
               
               Cow position:chr11:14650386-14650670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):212, 160

               
               
               Conread position:802-1084
               
               
               Cow position:chr11:66731759-66732029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:802-1088
               
               
               Cow position:chr11:21887807-21887530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):252, 46

               
               
               Conread position:802-1089
               
               
               Cow position:chr11:1285505-1285218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):252, 73

               
               
               Conread position:802-1090
               
               
               Cow position:chr11:66859720-66859430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):246, 0

               
               
               Conread position:802-1108
               
               
               Cow position:chr11:32078163-32077860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):255, 145

               
               
               Conread position:802-1108
               
               
               Cow position:chr11:46687617-46687911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:218
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):73, 236

               
               
               Conread position:803-1058
               
               
               Cow position:chr11:56891601-56891346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:188
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):250, 190

               
               
               Conread position:803-1069
               
               
               Cow position:chr11:46412266-46412535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):113, 224

               
               
               Conread position:804-1018
               
               
               Cow position:chr11:9238720-9238933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):121, 28

               
               
               Conread position:804-1089
               
               
               Cow position:chr11:18068182-18067899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:209
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):246, 58

               
               
               Conread position:804-1089
               
               
               Cow position:chr11:40773421-40773151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):242, 81

               
               
               Conread position:804-1110
               
               
               Cow position:chr11:26400099-26400409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):202, 103

               
               
               Conread position:805-1068
               
               
               Cow position:chr11:12178598-12178863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):89, 112

               
               
               Conread position:805-1087
               
               
               Cow position:chr11:39483901-39484184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:205
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):116, 102

               
               
               Conread position:805-1089
               
               
               Cow position:chr11:49237344-49237060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 42

               
               
               Conread position:806-1070
               
               
               Cow position:chr11:77777400-77777139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):55, 38

               
               
               Conread position:806-1089
               
               
               Cow position:chr11:58805196-58804916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):158, 88

               
               
               Conread position:806-1112
               
               
               Cow position:chr11:8830155-8829842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):51, 160

               
               
               Conread position:807-1089
               
               
               Cow position:chr11:12177708-12177992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):145, 0

               
               
               Conread position:807-1089
               
               
               Cow position:chr11:14260338-14260053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 221

               
               
               Conread position:808-1087
               
               
               Cow position:chr11:33733955-33733676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 64

               
               
               Conread position:809-1107
               
               
               Cow position:chr11:26068495-26068196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):186, 48

               
               
               Conread position:810-1065
               
               
               Cow position:chr11:12493982-12493727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:189
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):15, 48

               
               
               Conread position:810-1085
               
               
               Cow position:chr11:16592210-16592488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):161, 8

               
               
               Conread position:812-1089
               
               
               Cow position:chr11:80789770-80789487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):39, 79

               
               
               Conread position:813-1081
               
               
               Cow position:chr11:48485447-48485178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):222, 150

               
               
               Conread position:814-1089
               
               
               Cow position:chr11:42365927-42366202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:183
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):146, 111

               
               
               Conread position:814-1116
               
               
               Cow position:chr11:37117702-37118000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):240, 130

               
               
               Conread position:815-972
               
               
               Cow position:chr11:30194000-30194156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:815-1090
               
               
               Cow position:chr11:21648217-21648489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):103, 56

               
               
               Conread position:817-1070
               
               
               Cow position:chr11:77758002-77757751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):241, 32

               
               
               Conread position:817-1083
               
               
               Cow position:chr11:49551390-49551118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:817-1089
               
               
               Cow position:chr11:34022560-34022831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):218, 153

               
               
               Conread position:817-1089
               
               
               Cow position:chr11:44106307-44106589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):144, 0

               
               
               Conread position:817-1089
               
               
               Cow position:chr11:50557211-50556940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:189
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):197, 87

               
               
               Conread position:818-1068
               
               
               Cow position:chr11:2951459-2951204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):33, 70

               
               
               Conread position:818-1089
               
               
               Cow position:chr11:2285345-2285617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):236, 0

               
               
               Conread position:818-1089
               
               
               Cow position:chr11:60604723-60604995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:180
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):144, 39

               
               
               Conread position:818-1137
               
               
               Cow position:chr11:82346507-82346190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):217, 118

               
               
               Conread position:820-1035
               
               
               Cow position:chr11:9432061-9432275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):7, 38

               
               
               Conread position:820-1069
               
               
               Cow position:chr11:8242494-8242246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):231, 37

               
               
               Conread position:820-1108
               
               
               Cow position:chr11:41621608-41621891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:201
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):203, 142

               
               
               Conread position:821-1083
               
               
               Cow position:chr11:9222988-9222732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:192
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):197, 0

               
               
               Conread position:822-1089
               
               
               Cow position:chr11:24494172-24493904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):232, 0

               
               
               Conread position:824-1089
               
               
               Cow position:chr11:61426332-61426596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:191
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):182, 160

               
               
               Conread position:825-1089
               
               
               Cow position:chr11:67741385-67741122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):190, 48

               
               
               Conread position:826-1089
               
               
               Cow position:chr11:7719876-7719611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:827-1089
               
               
               Cow position:chr11:26051881-26051618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):210, 37

               
               
               Conread position:827-1089
               
               
               Cow position:chr11:28631174-28631437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):227, 0

               
               
               Conread position:834-1084
               
               
               Cow position:chr11:31865282-31865532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:177
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):220, 5

               
               
               Conread position:834-1089
               
               
               Cow position:chr11:9387984-9388241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 161

               
               
               Conread position:834-1089
               
               
               Cow position:chr11:76767066-76767321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):87, 69

               
               
               Conread position:835-1076
               
               
               Cow position:chr11:72021071-72021316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):29, 239

               
               
               Conread position:835-1084
               
               
               Cow position:chr11:15995133-15995385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:188
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):47, 113

               
               
               Conread position:835-1089
               
               
               Cow position:chr11:40134159-40133904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):121, 159

               
               
               Conread position:835-1089
               
               
               Cow position:chr11:51033936-51034180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):97, 184

               
               
               Conread position:838-1084
               
               
               Cow position:chr11:32254605-32254851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:182
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):219, 199

               
               
               Conread position:840-1048
               
               
               Cow position:chr11:45157057-45156849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:841-1089
               
               
               Cow position:chr11:22618291-22618042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):213, 0

               
               
               Conread position:844-1086
               
               
               Cow position:chr11:64904054-64903798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:185
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):173, 27

               
               
               Conread position:847-1004
               
               
               Cow position:chr11:63617997-63617840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:847-1089
               
               
               Cow position:chr11:18889999-18890238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):29, 47

               
               
               Conread position:854-1089
               
               
               Cow position:chr11:32876275-32876039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:185
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):200, 0

               
               
               Conread position:854-1089
               
               
               Cow position:chr11:49936072-49935844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:181
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):184, 0

               
               
               Conread position:854-1108
               
               
               Cow position:chr11:37279908-37279651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):162, 0

               
               
               Conread position:856-1068
               
               
               Cow position:chr11:5388121-5388329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):65, 54

               
               
               Conread position:856-1089
               
               
               Cow position:chr11:35861979-35861748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):158, 84

               
               
               Conread position:857-1070
               
               
               Cow position:chr11:77765257-77765046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):197, 63

               
               
               Conread position:857-1077
               
               
               Cow position:chr11:55486445-55486665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):196, 35

               
               
               Conread position:857-1085
               
               
               Cow position:chr11:29547489-29547707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:174
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):174, 0

               
               
               Conread position:857-1089
               
               
               Cow position:chr11:28598209-28597985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):176, 0

               
               
               Conread position:858-1089
               
               
               Cow position:chr11:40457848-40458079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:173
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):195, 85

               
               
               Conread position:859-1089
               
               
               Cow position:chr11:17853767-17853998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):195, 0

               
               
               Conread position:860-1089
               
               
               Cow position:chr11:62791569-62791799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):194, 0

               
               
               Conread position:860-1124
               
               
               Cow position:chr11:81067423-81067688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):194, 240

               
               
               Conread position:861-1089
               
               
               Cow position:chr11:38600025-38599810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):193, 49

               
               
               Conread position:862-992
               
               
               Cow position:chr11:44875171-44875307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:862-1089
               
               
               Cow position:chr11:3795915-3796139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):186, 101

               
               
               Conread position:864-1089
               
               
               Cow position:chr11:17980613-17980388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):193, 150

               
               
               Conread position:867-1108
               
               
               Cow position:chr11:25335821-25336062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):230, 224

               
               
               Conread position:871-1087
               
               
               Cow position:chr11:41106703-41106485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:166
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):170, 0

               
               
               Conread position:873-1077
               
               
               Cow position:chr11:15495078-15495280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):180, 16

               
               
               Conread position:873-1107
               
               
               Cow position:chr11:72320993-72321227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):164, 142

               
               
               Conread position:874-1016
               
               
               Cow position:chr11:36965804-36965662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:105
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:874-1083
               
               
               Cow position:chr11:10365701-10365492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:170
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 178

               
               
               Conread position:874-1084
               
               
               Cow position:chr11:38793275-38793486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):172, 51

               
               
               Conread position:874-1089
               
               
               Cow position:chr11:1667315-1667528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):183, 172

               
               
               Conread position:874-1089
               
               
               Cow position:chr11:13087979-13087763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:168
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):183, 0

               
               
               Conread position:875-1089
               
               
               Cow position:chr11:42357894-42358106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 85

               
               
               Conread position:877-1089
               
               
               Cow position:chr11:10872134-10871921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:166
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):177, 0

               
               
               Conread position:880-1089
               
               
               Cow position:chr11:26593084-26592873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:161
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:883-1088
               
               
               Cow position:chr11:19507028-19507233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:172
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):172, 62

               
               
               Conread position:883-1089
               
               
               Cow position:chr11:26828902-26828699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:152
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):10, 28

               
               
               Conread position:883-1089
               
               
               Cow position:chr11:73466507-73466301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:151
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):38, 27

               
               
               Conread position:886-1089
               
               
               Cow position:chr11:30056912-30057111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:167
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):16, 60

               
               
               Conread position:889-1089
               
               
               Cow position:chr11:75353906-75354108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:166
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):165, 0

               
               
               Conread position:890-1082
               
               
               Cow position:chr11:27284142-27284334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):83, 8

               
               
               Conread position:890-1084
               
               
               Cow position:chr11:21471337-21471526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:148
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):31, 20

               
               
               Conread position:892-1089
               
               
               Cow position:chr11:5273867-5273670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):165, 39

               
               
               Conread position:892-1089
               
               
               Cow position:chr11:38842558-38842360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):165, 0

               
               
               Conread position:893-1089
               
               
               Cow position:chr11:43362006-43361815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):161, 111

               
               
               Conread position:896-1057
               
               
               Cow position:chr11:67745918-67746074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:896-1089
               
               
               Cow position:chr11:59444836-59444642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):158, 0

               
               
               Conread position:899-1089
               
               
               Cow position:chr11:30776676-30776867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:146
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):155, 0

               
               
               Conread position:903-1060
               
               
               Cow position:chr11:48427865-48428022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:911-1084
               
               
               Cow position:chr11:45633373-45633199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:144
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):143, 0

               
               
               Conread position:911-1130
               
               
               Cow position:chr11:25864875-25864656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):143, 48

               
               
               Conread position:916-1108
               
               
               Cow position:chr11:12763463-12763266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:155
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:919-1073
               
               
               Cow position:chr11:31486834-31486989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:123
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):43, 18

               
               
               Conread position:920-1026
               
               
               Cow position:chr11:8843879-8843985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:87
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:920-1089
               
               
               Cow position:chr11:24600724-24600894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):134, 0

               
               
               Conread position:920-1089
               
               
               Cow position:chr11:30255164-30255337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:921-1118
               
               
               Cow position:chr11:27938345-27938544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):95, 28

               
               
               Conread position:923-1089
               
               
               Cow position:chr11:41229262-41229096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):132, 95

               
               
               Conread position:927-1067
               
               
               Cow position:chr11:31532416-31532555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:106
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):127, 35

               
               
               Conread position:928-1089
               
               
               Cow position:chr11:9154154-9153994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):126, 148

               
               
               Conread position:928-1089
               
               
               Cow position:chr11:16548208-16548046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:928-1089
               
               
               Cow position:chr11:17998189-17998029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):126, 34

               
               
               Conread position:928-1089
               
               
               Cow position:chr11:34638762-34638600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:928-1089
               
               
               Cow position:chr11:41094120-41093958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:121
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):129, 0

               
               
               Conread position:928-1089
               
               
               Cow position:chr11:45102747-45102585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:928-1089
               
               
               Cow position:chr11:57185107-57185269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:928-1089
               
               
               Cow position:chr11:73137333-73137496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:126
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:929-1089
               
               
               Cow position:chr11:23896263-23896424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):129, 0

               
               
               Conread position:929-1089
               
               
               Cow position:chr11:35242127-35241965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:929-1089
               
               
               Cow position:chr11:52127952-52128113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):125, 0

               
               
               Conread position:930-1077
               
               
               Cow position:chr11:65760862-65760714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:113
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:933-1089
               
               
               Cow position:chr11:25759500-25759657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:933-1089
               
               
               Cow position:chr11:76960209-76960364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):121, 143

               
               
               Conread position:942-1089
               
               
               Cow position:chr11:19271506-19271361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):112, 74

               
               
               Conread position:942-1089
               
               
               Cow position:chr11:24334237-24334089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:117
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:942-1108
               
               
               Cow position:chr11:18438704-18438870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):112, 150

               
               
               Conread position:952-1089
               
               
               Cow position:chr11:20285852-20285714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:110
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:953-1089
               
               
               Cow position:chr11:17037877-17037742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):101, 129

               
               
               Conread position:955-1089
               
               
               Cow position:chr11:17782257-17782123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):100, 13

               
               
               Conread position:956-1089
               
               
               Cow position:chr11:3238071-3238205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:109
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:958-1089
               
               
               Cow position:chr11:83000801-83000933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:108
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:970-1089
               
               
               Cow position:chr11:13062623-13062503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:103
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:970-1107
               
               
               Cow position:chr11:77236357-77236495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:103
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:972-1089
               
               
               Cow position:chr11:53285442-53285324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:95
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:976-1089
               
               
               Cow position:chr11:10043293-10043179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:91
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:782-1003
               
               
               Cow position:chr12:12295417-12295633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):139, 36

               
               
               Conread position:782-1068
               
               
               Cow position:chr12:35367285-35367572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):272, 0

               
               
               Conread position:782-1089
               
               
               Cow position:chr12:23944034-23944338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:206
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):256, 28

               
               
               Conread position:782-1108
               
               
               Cow position:chr12:45176022-45175712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):21, 16

               
               
               Conread position:783-905
               
               
               Cow position:chr12:25260632-25260510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:98
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-908
               
               
               Cow position:chr12:21430844-21430969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:98
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-908
               
               
               Cow position:chr12:34051123-34051247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:97
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:783-943
               
               
               Cow position:chr12:15539679-15539839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-953
               
               
               Cow position:chr12:1437809-1437979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-958
               
               
               Cow position:chr12:22518031-22517856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-975
               
               
               Cow position:chr12:21211629-21211821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-979
               
               
               Cow position:chr12:36405787-36405591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-988
               
               
               Cow position:chr12:36213137-36213342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-1010
               
               
               Cow position:chr12:24029849-24029628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:173
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):128, 71

               
               
               Conread position:783-1016
               
               
               Cow position:chr12:3363824-3364057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-1016
               
               
               Cow position:chr12:22480115-22479882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-1035
               
               
               Cow position:chr12:536688-536436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-1040
               
               
               Cow position:chr12:7961856-7961622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:191
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):75, 32

               
               
               Conread position:783-1047
               
               
               Cow position:chr12:21090891-21090635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:187
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):10, 18

               
               
               Conread position:783-1050
               
               
               Cow position:chr12:31329736-31329471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:783-1069
               
               
               Cow position:chr12:24992942-24992655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1070
               
               
               Cow position:chr12:23100156-23099881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:192
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):275, 40

               
               
               Conread position:783-1073
               
               
               Cow position:chr12:46163620-46163912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1076
               
               
               Cow position:chr12:1407712-1408000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 222

               
               
               Conread position:783-1077
               
               
               Cow position:chr12:32986416-32986706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:210
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):138, 87

               
               
               Conread position:783-1077
               
               
               Cow position:chr12:42605295-42605000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1080
               
               
               Cow position:chr12:41288218-41288510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):134, 127

               
               
               Conread position:783-1083
               
               
               Cow position:chr12:758301-758602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 235

               
               
               Conread position:783-1083
               
               
               Cow position:chr12:4783608-4783312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):78, 234

               
               
               Conread position:783-1083
               
               
               Cow position:chr12:27853065-27852759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 18

               
               
               Conread position:783-1083
               
               
               Cow position:chr12:27993981-27994282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):136, 149

               
               
               Conread position:783-1083
               
               
               Cow position:chr12:32011901-32011596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:783-1084
               
               
               Cow position:chr12:551934-551632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1084
               
               
               Cow position:chr12:8675183-8674883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 74

               
               
               Conread position:783-1084
               
               
               Cow position:chr12:13259301-13259597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):124, 158

               
               
               Conread position:783-1084
               
               
               Cow position:chr12:20847019-20847320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 74

               
               
               Conread position:783-1084
               
               
               Cow position:chr12:21314549-21314247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1086
               
               
               Cow position:chr12:21945923-21946219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 251

               
               
               Conread position:783-1089
               
               
               Cow position:chr12:1006896-1007203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr12:1405331-1405636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 88

               
               
               Conread position:783-1089
               
               
               Cow position:chr12:1491047-1491354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr12:1511883-1511576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr12:2285152-2285463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:214
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):103, 208

               
               
               Conread position:783-1089
               
               
               Cow position:chr12:3717393-3717086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr12:5106938-5107245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr12:5328029-5327722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr12:6106466-6106161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 18

               
               
               Conread position:783-1089
               
               
               Cow position:chr12:8137100-8136803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):271, 58

               
               
               Conread position:783-1089
               
               
               Cow position:chr12:8641659-8641966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr12:8773546-8773854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):270, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr12:10358576-10358883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 18

               
               
               Conread position:783-1089
               
               
               Cow position:chr12:10930957-10931272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 241

               
               
               Conread position:783-1089
               
               
               Cow position:chr12:11101129-11101435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 232

               
               
               Conread position:783-1089
               
               
               Cow position:chr12:12755274-12754969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 18

               
               
               Conread position:783-1089
               
               
               Cow position:chr12:12929023-12928719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 15

               
               
               Conread position:783-1089
               
               
               Cow position:chr12:20459838-20459532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 254

               
               
               Conread position:783-1089
               
               
               Cow position:chr12:20994878-20994577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 57

               
               
               Conread position:783-1089
               
               
               Cow position:chr12:21201691-21201979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:212
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):29, 165

               
               
               Conread position:783-1089
               
               
               Cow position:chr12:21610474-21610791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 158

               
               
               Conread position:783-1089
               
               
               Cow position:chr12:21665017-21665323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 57

               
               
               Conread position:783-1089
               
               
               Cow position:chr12:21904251-21904554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:219
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):163, 25

               
               
               Conread position:783-1089
               
               
               Cow position:chr12:22202787-22202479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 290

               
               
               Conread position:783-1089
               
               
               Cow position:chr12:22593637-22593952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:226
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):116, 156

               
               
               Conread position:783-1089
               
               
               Cow position:chr12:22748095-22748402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr12:23138448-23138141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):270, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr12:24696427-24696733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 18

               
               
               Conread position:783-1089
               
               
               Cow position:chr12:24980602-24980908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 289

               
               
               Conread position:783-1089
               
               
               Cow position:chr12:25097383-25097078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 180

               
               
               Conread position:783-1089
               
               
               Cow position:chr12:25148737-25148430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 18

               
               
               Conread position:783-1089
               
               
               Cow position:chr12:25266452-25266146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):275, 213

               
               
               Conread position:783-1089
               
               
               Cow position:chr12:27506768-27506462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 180

               
               
               Conread position:783-1089
               
               
               Cow position:chr12:27929911-27929604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr12:27958645-27958338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr12:28764118-28763811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 116

               
               
               Conread position:783-1089
               
               
               Cow position:chr12:30501521-30501828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):275, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr12:30686621-30686929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):265, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr12:32656435-32656736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):275, 155

               
               
               Conread position:783-1089
               
               
               Cow position:chr12:32757577-32757884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 18

               
               
               Conread position:783-1089
               
               
               Cow position:chr12:34176245-34176552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr12:35161488-35161795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr12:35162644-35162951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr12:35548246-35547941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr12:37561889-37562194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 245

               
               
               Conread position:783-1089
               
               
               Cow position:chr12:38893243-38893551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr12:39930049-39930356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr12:41338349-41338045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 109

               
               
               Conread position:783-1089
               
               
               Cow position:chr12:42232190-42232497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr12:42856650-42856344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 18

               
               
               Conread position:783-1106
               
               
               Cow position:chr12:21392143-21391818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):188, 222

               
               
               Conread position:783-1107
               
               
               Cow position:chr12:1775036-1774713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:226
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):265, 155

               
               
               Conread position:783-1108
               
               
               Cow position:chr12:17968869-17969194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:226
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):121, 74

               
               
               Conread position:783-1108
               
               
               Cow position:chr12:19155968-19155653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 54

               
               
               Conread position:783-1108
               
               
               Cow position:chr12:21719291-21718971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 47

               
               
               Conread position:783-1108
               
               
               Cow position:chr12:47803057-47803379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 59

               
               
               Conread position:783-1112
               
               
               Cow position:chr12:42797893-42798218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:219
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):186, 17

               
               
               Conread position:783-1118
               
               
               Cow position:chr12:1476778-1476445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):106, 166

               
               
               Conread position:783-1124
               
               
               Cow position:chr12:19871095-19871434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 162

               
               
               Conread position:784-1033
               
               
               Cow position:chr12:47168011-47168257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):34, 105

               
               
               Conread position:784-1084
               
               
               Cow position:chr12:17981301-17981591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:784-1089
               
               
               Cow position:chr12:62326-62020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):270, 0

               
               
               Conread position:784-1089
               
               
               Cow position:chr12:21074719-21075023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):269, 115

               
               
               Conread position:784-1089
               
               
               Cow position:chr12:31027939-31027632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):187, 0

               
               
               Conread position:784-1092
               
               
               Cow position:chr12:3094741-3094444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):302, 105

               
               
               Conread position:785-1006
               
               
               Cow position:chr12:36204634-36204857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):142, 53

               
               
               Conread position:785-1026
               
               
               Cow position:chr12:1469242-1469001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:184
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:785-1089
               
               
               Cow position:chr12:1056625-1056320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):269, 0

               
               
               Conread position:785-1089
               
               
               Cow position:chr12:14568932-14568627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):269, 0

               
               
               Conread position:785-1089
               
               
               Cow position:chr12:17718183-17718488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):269, 0

               
               
               Conread position:785-1092
               
               
               Cow position:chr12:542533-542227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):77, 26

               
               
               Conread position:786-1066
               
               
               Cow position:chr12:42194518-42194798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:786-1076
               
               
               Cow position:chr12:250429-250136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:786-1089
               
               
               Cow position:chr12:1886468-1886171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):260, 0

               
               
               Conread position:786-1089
               
               
               Cow position:chr12:42558169-42557877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:205
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):268, 85

               
               
               Conread position:787-1084
               
               
               Cow position:chr12:32066449-32066742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:204
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):134, 120

               
               
               Conread position:788-1084
               
               
               Cow position:chr12:487557-487849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:197
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):270, 12

               
               
               Conread position:789-1009
               
               
               Cow position:chr12:22253500-22253716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):132, 24

               
               
               Conread position:790-997
               
               
               Cow position:chr12:19861574-19861781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:790-1084
               
               
               Cow position:chr12:17662862-17663145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):215, 59

               
               
               Conread position:791-1077
               
               
               Cow position:chr12:10445299-10445561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:196
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:796-1089
               
               
               Cow position:chr12:8626204-8626490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):125, 114

               
               
               Conread position:796-1089
               
               
               Cow position:chr12:8628300-8628014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):125, 114

               
               
               Conread position:797-1088
               
               
               Cow position:chr12:26870202-26870495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):195, 210

               
               
               Conread position:797-1089
               
               
               Cow position:chr12:19197943-19198223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):258, 78

               
               
               Conread position:801-1089
               
               
               Cow position:chr12:27614314-27614603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):253, 0

               
               
               Conread position:801-1111
               
               
               Cow position:chr12:1107941-1108247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):251, 85

               
               
               Conread position:802-1004
               
               
               Cow position:chr12:1500048-1500246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):124, 8

               
               
               Conread position:802-1087
               
               
               Cow position:chr12:10486380-10486654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:193
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):233, 52

               
               
               Conread position:802-1089
               
               
               Cow position:chr12:1174108-1173822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:207
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):119, 30

               
               
               Conread position:802-1089
               
               
               Cow position:chr12:45144957-45145240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):252, 39

               
               
               Conread position:803-1108
               
               
               Cow position:chr12:23159611-23159296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):212, 35

               
               
               Conread position:804-1084
               
               
               Cow position:chr12:18585574-18585855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):253, 0

               
               
               Conread position:804-1094
               
               
               Cow position:chr12:21484314-21484604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):254, 139

               
               
               Conread position:806-964
               
               
               Cow position:chr12:21658716-21658871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:806-1084
               
               
               Cow position:chr12:22565941-22566217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):152, 0

               
               
               Conread position:808-1084
               
               
               Cow position:chr12:19040519-19040796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):246, 0

               
               
               Conread position:808-1089
               
               
               Cow position:chr12:5712868-5713151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:813-1076
               
               
               Cow position:chr12:21129961-21130216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:192
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):223, 77

               
               
               Conread position:813-1084
               
               
               Cow position:chr12:32220008-32220282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):115, 26

               
               
               Conread position:813-1088
               
               
               Cow position:chr12:32848487-32848754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:202
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):241, 11

               
               
               Conread position:813-1130
               
               
               Cow position:chr12:21705960-21705651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):49, 123

               
               
               Conread position:814-1108
               
               
               Cow position:chr12:23491820-23491528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):96, 157

               
               
               Conread position:816-1116
               
               
               Cow position:chr12:21862512-21862217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:817-1108
               
               
               Cow position:chr12:21251397-21251108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 0

               
               
               Conread position:828-1112
               
               
               Cow position:chr12:8842126-8841845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):226, 95

               
               
               Conread position:838-1089
               
               
               Cow position:chr12:8839187-8839441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:840-1076
               
               
               Cow position:chr12:20334491-20334718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):202, 48

               
               
               Conread position:844-1089
               
               
               Cow position:chr12:48416803-48416559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):228, 0

               
               
               Conread position:851-1089
               
               
               Cow position:chr12:19971712-19971952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:162
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):203, 51

               
               
               Conread position:853-1089
               
               
               Cow position:chr12:5777179-5776942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:185
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):201, 0

               
               
               Conread position:854-1089
               
               
               Cow position:chr12:15230979-15231222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:857-1069
               
               
               Cow position:chr12:35473581-35473368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:170
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):197, 0

               
               
               Conread position:857-1087
               
               
               Cow position:chr12:23521208-23520977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):201, 0

               
               
               Conread position:857-1089
               
               
               Cow position:chr12:9988733-9988499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:860-1108
               
               
               Cow position:chr12:16438982-16439232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):101, 166

               
               
               Conread position:863-1060
               
               
               Cow position:chr12:9926524-9926715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:864-1089
               
               
               Cow position:chr12:32105599-32105826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:149
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:865-1027
               
               
               Cow position:chr12:18546910-18547072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:865-1076
               
               
               Cow position:chr12:11582133-11582344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:155
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):189, 60

               
               
               Conread position:872-1089
               
               
               Cow position:chr12:21303398-21303616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:171
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):182, 0

               
               
               Conread position:874-1073
               
               
               Cow position:chr12:15695739-15695539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:163
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):26, 137

               
               
               Conread position:874-1089
               
               
               Cow position:chr12:6441866-6441654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):180, 33

               
               
               Conread position:874-1089
               
               
               Cow position:chr12:15925780-15925564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:171
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 0

               
               
               Conread position:874-1108
               
               
               Cow position:chr12:15939890-15939655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:171
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):180, 0

               
               
               Conread position:875-1016
               
               
               Cow position:chr12:1219897-1220038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:876-1083
               
               
               Cow position:chr12:3180389-3180596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):181, 105

               
               
               Conread position:878-1082
               
               
               Cow position:chr12:1343430-1343634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):180, 65

               
               
               Conread position:885-1089
               
               
               Cow position:chr12:23512196-23511990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):169, 0

               
               
               Conread position:885-1089
               
               
               Cow position:chr12:36288030-36287825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:157
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):169, 0

               
               
               Conread position:887-1089
               
               
               Cow position:chr12:33925713-33925510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:156
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):167, 0

               
               
               Conread position:887-1108
               
               
               Cow position:chr12:40306281-40306505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):19, 83

               
               
               Conread position:889-1089
               
               
               Cow position:chr12:25313727-25313526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):71, 108

               
               
               Conread position:891-1089
               
               
               Cow position:chr12:28737514-28737713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):163, 0

               
               
               Conread position:901-1089
               
               
               Cow position:chr12:16302340-16302151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):153, 0

               
               
               Conread position:901-1091
               
               
               Cow position:chr12:43681003-43681194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):153, 0

               
               
               Conread position:914-1089
               
               
               Cow position:chr12:29128350-29128175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:914-1089
               
               
               Cow position:chr12:32147616-32147442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):140, 114

               
               
               Conread position:914-1108
               
               
               Cow position:chr12:2242973-2242781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:916-1077
               
               
               Cow position:chr12:46112104-46111942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:131
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):142, 0

               
               
               Conread position:920-1084
               
               
               Cow position:chr12:23152716-23152553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):133, 100

               
               
               Conread position:923-1084
               
               
               Cow position:chr12:24557600-24557762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):113, 132

               
               
               Conread position:927-1077
               
               
               Cow position:chr12:28013207-28013056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):127, 0

               
               
               Conread position:928-1089
               
               
               Cow position:chr12:258755-258917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:130
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:928-1089
               
               
               Cow position:chr12:5111035-5110873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:928-1089
               
               
               Cow position:chr12:21010453-21010291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:928-1089
               
               
               Cow position:chr12:31829424-31829262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:129
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:928-1089
               
               
               Cow position:chr12:32340231-32340069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:128
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:932-1089
               
               
               Cow position:chr12:34514622-34514464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:127
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:933-1089
               
               
               Cow position:chr12:7673932-7674089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:936-1089
               
               
               Cow position:chr12:22517818-22517665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):118, 130

               
               
               Conread position:937-1089
               
               
               Cow position:chr12:14423384-14423537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:942-1089
               
               
               Cow position:chr12:32088306-32088454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:944-1089
               
               
               Cow position:chr12:21889001-21888855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:117
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:946-1089
               
               
               Cow position:chr12:21211826-21211971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:112
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:956-1089
               
               
               Cow position:chr12:5226302-5226436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:965-1089
               
               
               Cow position:chr12:1437972-1438097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:101
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:967-1089
               
               
               Cow position:chr12:32900856-32900979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:98
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:972-1089
               
               
               Cow position:chr12:1789575-1789457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:93
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:777-1104
               
               
               Cow position:chr13:36212137-36211809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:223
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):226, 37

               
               
               Conread position:778-1123
               
               
               Cow position:chr13:20483831-20484177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):276, 294

               
               
               Conread position:781-1083
               
               
               Cow position:chr13:14552950-14552653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):273, 71

               
               
               Conread position:782-931
               
               
               Cow position:chr13:46598919-46598769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:118
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:782-988
               
               
               Cow position:chr13:30431026-30430822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:782-1000
               
               
               Cow position:chr13:29519121-29519338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:155
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):28, 42

               
               
               Conread position:782-1025
               
               
               Cow position:chr13:52279490-52279740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:169
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):128, 5

               
               
               Conread position:782-1047
               
               
               Cow position:chr13:31726005-31725742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 19

               
               
               Conread position:782-1069
               
               
               Cow position:chr13:30274760-30274480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:189
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):232, 21

               
               
               Conread position:782-1084
               
               
               Cow position:chr13:34376855-34376556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):272, 31

               
               
               Conread position:782-1085
               
               
               Cow position:chr13:21855016-21855312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):276, 30

               
               
               Conread position:782-1089
               
               
               Cow position:chr13:17318702-17318397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:206
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):202, 0

               
               
               Conread position:782-1089
               
               
               Cow position:chr13:32320512-32320203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:219
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):139, 128

               
               
               Conread position:782-1089
               
               
               Cow position:chr13:43975272-43974972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):275, 68

               
               
               Conread position:782-1089
               
               
               Cow position:chr13:49976341-49976649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):272, 0

               
               
               Conread position:782-1089
               
               
               Cow position:chr13:60646914-60646607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):272, 103

               
               
               Conread position:782-1090
               
               
               Cow position:chr13:44659727-44659422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):17, 24

               
               
               Conread position:782-1104
               
               
               Cow position:chr13:61977670-61977989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:209
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):8, 13

               
               
               Conread position:782-1107
               
               
               Cow position:chr13:30241221-30241542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):227, 64

               
               
               Conread position:783-892
               
               
               Cow position:chr13:19394358-19394249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:89
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-900
               
               
               Cow position:chr13:15986921-15986804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:94
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-908
               
               
               Cow position:chr13:5515654-5515529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:100
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-938
               
               
               Cow position:chr13:51006351-51006196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-992
               
               
               Cow position:chr13:33929470-33929262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):167, 0

               
               
               Conread position:783-995
               
               
               Cow position:chr13:11301873-11302083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):161, 0

               
               
               Conread position:783-1001
               
               
               Cow position:chr13:45930179-45930404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:153
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:783-1002
               
               
               Cow position:chr13:24932118-24931899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:169
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-1004
               
               
               Cow position:chr13:19265155-19264932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:783-1004
               
               
               Cow position:chr13:35955668-35955885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:783-1004
               
               
               Cow position:chr13:36244255-36244038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:783-1010
               
               
               Cow position:chr13:60698133-60697907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):193, 0

               
               
               Conread position:783-1017
               
               
               Cow position:chr13:15279137-15278906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:783-1018
               
               
               Cow position:chr13:43591959-43592196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:176
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:783-1028
               
               
               Cow position:chr13:512239-512478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):129, 74

               
               
               Conread position:783-1035
               
               
               Cow position:chr13:36672329-36672578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):198, 0

               
               
               Conread position:783-1048
               
               
               Cow position:chr13:30242894-30243159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-1056
               
               
               Cow position:chr13:19424301-19424579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):169, 148

               
               
               Conread position:783-1069
               
               
               Cow position:chr13:55780855-55780570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):217, 194

               
               
               Conread position:783-1075
               
               
               Cow position:chr13:47729126-47728836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):235, 0

               
               
               Conread position:783-1077
               
               
               Cow position:chr13:14737563-14737859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:783-1077
               
               
               Cow position:chr13:21401518-21401801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:211
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:783-1077
               
               
               Cow position:chr13:28131178-28131473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):275, 0

               
               
               Conread position:783-1083
               
               
               Cow position:chr13:36936404-36936705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):173, 166

               
               
               Conread position:783-1084
               
               
               Cow position:chr13:513099-512802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:216
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):254, 74

               
               
               Conread position:783-1084
               
               
               Cow position:chr13:3556085-3556386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 22

               
               
               Conread position:783-1084
               
               
               Cow position:chr13:5230295-5229991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:783-1084
               
               
               Cow position:chr13:20564311-20564007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:213
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):78, 106

               
               
               Conread position:783-1084
               
               
               Cow position:chr13:30305858-30306160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1084
               
               
               Cow position:chr13:31730899-31730597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):272, 0

               
               
               Conread position:783-1084
               
               
               Cow position:chr13:34509150-34508848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1084
               
               
               Cow position:chr13:60425706-60426002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:216
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):142, 177

               
               
               Conread position:783-1087
               
               
               Cow position:chr13:34051302-34051599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):227, 83

               
               
               Conread position:783-1089
               
               
               Cow position:chr13:143447-143140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr13:561712-561407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 144

               
               
               Conread position:783-1089
               
               
               Cow position:chr13:1591482-1591177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 68

               
               
               Conread position:783-1089
               
               
               Cow position:chr13:2138506-2138199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr13:3651771-3651465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr13:4944062-4944369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr13:5261428-5261730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:211
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):271, 149

               
               
               Conread position:783-1089
               
               
               Cow position:chr13:6360539-6360845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 281

               
               
               Conread position:783-1089
               
               
               Cow position:chr13:6665456-6665149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 18

               
               
               Conread position:783-1089
               
               
               Cow position:chr13:8068530-8068223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr13:9300843-9301149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 172

               
               
               Conread position:783-1089
               
               
               Cow position:chr13:11169471-11169175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr13:11254989-11254668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:229
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):109, 40

               
               
               Conread position:783-1089
               
               
               Cow position:chr13:11389930-11390237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr13:11796027-11795718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 40

               
               
               Conread position:783-1089
               
               
               Cow position:chr13:12565479-12565183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):90, 128

               
               
               Conread position:783-1089
               
               
               Cow position:chr13:13333282-13332975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):272, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr13:13902529-13902835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 18

               
               
               Conread position:783-1089
               
               
               Cow position:chr13:14303311-14303007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 198

               
               
               Conread position:783-1089
               
               
               Cow position:chr13:14400405-14400098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):138, 127

               
               
               Conread position:783-1089
               
               
               Cow position:chr13:14411499-14411192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr13:15921785-15921478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr13:16807269-16807576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr13:18122198-18121891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr13:18330453-18330146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr13:19239580-19239879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):296, 74

               
               
               Conread position:783-1089
               
               
               Cow position:chr13:19566392-19566700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr13:19637825-19638132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr13:21837625-21837318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr13:22275473-22275759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr13:23267158-23266850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 135

               
               
               Conread position:783-1089
               
               
               Cow position:chr13:26823431-26823138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 124

               
               
               Conread position:783-1089
               
               
               Cow position:chr13:26987238-26986933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):15, 21

               
               
               Conread position:783-1089
               
               
               Cow position:chr13:28526637-28526331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr13:28699494-28699799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):282, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr13:30469443-30469139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):213, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr13:31608767-31608462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):270, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr13:31614271-31613968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:211
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):254, 74

               
               
               Conread position:783-1089
               
               
               Cow position:chr13:31989549-31989853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):275, 52

               
               
               Conread position:783-1089
               
               
               Cow position:chr13:32080549-32080855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 13

               
               
               Conread position:783-1089
               
               
               Cow position:chr13:32253679-32253372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr13:32549432-32549738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 166

               
               
               Conread position:783-1089
               
               
               Cow position:chr13:32955788-32955482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 131

               
               
               Conread position:783-1089
               
               
               Cow position:chr13:32982729-32982423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 131

               
               
               Conread position:783-1089
               
               
               Cow position:chr13:33523282-33522979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 74

               
               
               Conread position:783-1089
               
               
               Cow position:chr13:34032838-34033133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:210
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):173, 84

               
               
               Conread position:783-1089
               
               
               Cow position:chr13:34039670-34039362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 18

               
               
               Conread position:783-1089
               
               
               Cow position:chr13:34870631-34870939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr13:36347450-36347147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):133, 269

               
               
               Conread position:783-1089
               
               
               Cow position:chr13:42087456-42087149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr13:43120876-43120570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):273, 64

               
               
               Conread position:783-1089
               
               
               Cow position:chr13:50190399-50190092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 135

               
               
               Conread position:783-1089
               
               
               Cow position:chr13:53051508-53051815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr13:53157717-53157410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr13:54312732-54313041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):16, 23

               
               
               Conread position:783-1089
               
               
               Cow position:chr13:58313004-58313311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1095
               
               
               Cow position:chr13:3001678-3001357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 18

               
               
               Conread position:783-1096
               
               
               Cow position:chr13:22907598-22907283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 205

               
               
               Conread position:783-1108
               
               
               Cow position:chr13:7608819-7609143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):212, 107

               
               
               Conread position:783-1108
               
               
               Cow position:chr13:30652616-30652287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:230
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):88, 243

               
               
               Conread position:783-1108
               
               
               Cow position:chr13:34905901-34905575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):254, 85

               
               
               Conread position:783-1113
               
               
               Cow position:chr13:31509819-31510147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 186

               
               
               Conread position:783-1118
               
               
               Cow position:chr13:4486525-4486861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 309

               
               
               Conread position:783-1124
               
               
               Cow position:chr13:17253285-17252931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:241
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):43, 140

               
               
               Conread position:784-1003
               
               
               Cow position:chr13:5626147-5625930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:784-1016
               
               
               Cow position:chr13:35539845-35540077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:182
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:784-1084
               
               
               Cow position:chr13:35760230-35760517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):295, 104

               
               
               Conread position:784-1087
               
               
               Cow position:chr13:47357901-47357607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 55

               
               
               Conread position:784-1089
               
               
               Cow position:chr13:17495760-17496062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):134, 0

               
               
               Conread position:784-1089
               
               
               Cow position:chr13:34322292-34322001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:784-1089
               
               
               Cow position:chr13:53575396-53575094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):272, 31

               
               
               Conread position:784-1106
               
               
               Cow position:chr13:44324290-44323965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 35

               
               
               Conread position:784-1108
               
               
               Cow position:chr13:50112139-50112464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):270, 308

               
               
               Conread position:784-1113
               
               
               Cow position:chr13:21587215-21587541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:219
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):26, 31

               
               
               Conread position:784-1113
               
               
               Cow position:chr13:34940343-34940666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:234
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):232, 53

               
               
               Conread position:784-1118
               
               
               Cow position:chr13:19843157-19843479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):270, 57

               
               
               Conread position:785-902
               
               
               Cow position:chr13:32922600-32922483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:94
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:785-905
               
               
               Cow position:chr13:644298-644178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:94
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:785-1060
               
               
               Cow position:chr13:43160374-43160649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):223, 77

               
               
               Conread position:785-1068
               
               
               Cow position:chr13:3481210-3480930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):251, 72

               
               
               Conread position:785-1083
               
               
               Cow position:chr13:34095242-34094945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:206
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):25, 30

               
               
               Conread position:785-1083
               
               
               Cow position:chr13:35686053-35686349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):140, 86

               
               
               Conread position:785-1084
               
               
               Cow position:chr13:30795038-30794741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:785-1089
               
               
               Cow position:chr13:3014852-3015148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):269, 122

               
               
               Conread position:785-1089
               
               
               Cow position:chr13:3021811-3021506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):269, 0

               
               
               Conread position:785-1089
               
               
               Cow position:chr13:32734512-32734208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):272, 178

               
               
               Conread position:785-1089
               
               
               Cow position:chr13:38611898-38612203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):272, 0

               
               
               Conread position:785-1089
               
               
               Cow position:chr13:41337995-41337690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):269, 0

               
               
               Conread position:785-1089
               
               
               Cow position:chr13:47569763-47570066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:200
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):249, 122

               
               
               Conread position:785-1090
               
               
               Cow position:chr13:47536789-47537084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:785-1124
               
               
               Cow position:chr13:20538871-20538530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):166, 255

               
               
               Conread position:786-1083
               
               
               Cow position:chr13:21906239-21905945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:227
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):13, 148

               
               
               Conread position:786-1084
               
               
               Cow position:chr13:18945842-18945554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:202
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):268, 187

               
               
               Conread position:786-1089
               
               
               Cow position:chr13:6441521-6441819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:206
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):174, 142

               
               
               Conread position:787-1047
               
               
               Cow position:chr13:46489265-46489002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:184
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):75, 18

               
               
               Conread position:792-1123
               
               
               Cow position:chr13:54243623-54243307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:224
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):15, 24

               
               
               Conread position:795-1093
               
               
               Cow position:chr13:1882822-1882529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):240, 62

               
               
               Conread position:796-1089
               
               
               Cow position:chr13:22714581-22714880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 27

               
               
               Conread position:797-1089
               
               
               Cow position:chr13:3314314-3314606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):257, 239

               
               
               Conread position:800-1054
               
               
               Cow position:chr13:4855775-4856029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):147, 170

               
               
               Conread position:800-1089
               
               
               Cow position:chr13:54107200-54106910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:206
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):236, 228

               
               
               Conread position:802-979
               
               
               Cow position:chr13:49747999-49748176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:802-1025
               
               
               Cow position:chr13:40426317-40426540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):62, 135

               
               
               Conread position:802-1060
               
               
               Cow position:chr13:9571312-9571051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):70, 21

               
               
               Conread position:802-1073
               
               
               Cow position:chr13:9537162-9536892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):255, 263

               
               
               Conread position:802-1077
               
               
               Cow position:chr13:29791038-29791307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):128, 6

               
               
               Conread position:802-1082
               
               
               Cow position:chr13:18761571-18761292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):252, 0

               
               
               Conread position:802-1083
               
               
               Cow position:chr13:21657887-21657607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):107, 122

               
               
               Conread position:802-1089
               
               
               Cow position:chr13:34298273-34298559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):252, 112

               
               
               Conread position:802-1089
               
               
               Cow position:chr13:41567491-41567199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):8, 13

               
               
               Conread position:802-1092
               
               
               Cow position:chr13:22773992-22774285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:215
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):69, 21

               
               
               Conread position:802-1094
               
               
               Cow position:chr13:1142694-1142981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):248, 135

               
               
               Conread position:802-1111
               
               
               Cow position:chr13:22781287-22780985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:215
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):252, 21

               
               
               Conread position:804-1083
               
               
               Cow position:chr13:20572018-20571735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 201

               
               
               Conread position:804-1089
               
               
               Cow position:chr13:26204765-26204480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:805-975
               
               
               Cow position:chr13:5717963-5717790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:125
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:805-1088
               
               
               Cow position:chr13:19141233-19141516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:192
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):194, 15

               
               
               Conread position:805-1089
               
               
               Cow position:chr13:14183256-14182974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):252, 48

               
               
               Conread position:805-1089
               
               
               Cow position:chr13:32794642-32794362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):252, 123

               
               
               Conread position:806-1084
               
               
               Cow position:chr13:61953938-61954216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):251, 178

               
               
               Conread position:806-1089
               
               
               Cow position:chr13:29055733-29055449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):248, 0

               
               
               Conread position:806-1089
               
               
               Cow position:chr13:39911100-39911384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):252, 0

               
               
               Conread position:807-1108
               
               
               Cow position:chr13:58718255-58718554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:213
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):251, 111

               
               
               Conread position:812-1089
               
               
               Cow position:chr13:3657649-3657371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):242, 0

               
               
               Conread position:813-1074
               
               
               Cow position:chr13:25891065-25891332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:193
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):40, 110

               
               
               Conread position:813-1089
               
               
               Cow position:chr13:10732689-10732959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):240, 93

               
               
               Conread position:813-1089
               
               
               Cow position:chr13:21764057-21764334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):109, 55

               
               
               Conread position:813-1089
               
               
               Cow position:chr13:25881944-25882209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):87, 77

               
               
               Conread position:813-1089
               
               
               Cow position:chr13:33169059-33168800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:197
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):108, 41

               
               
               Conread position:814-1067
               
               
               Cow position:chr13:57217203-57217454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):48, 81

               
               
               Conread position:814-1089
               
               
               Cow position:chr13:28132180-28132456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):240, 0

               
               
               Conread position:814-1092
               
               
               Cow position:chr13:4667793-4668078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:193
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):89, 57

               
               
               Conread position:815-1085
               
               
               Cow position:chr13:26080507-26080781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:185
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):106, 95

               
               
               Conread position:815-1089
               
               
               Cow position:chr13:30035606-30035343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):228, 74

               
               
               Conread position:816-1108
               
               
               Cow position:chr13:34993684-34993967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:210
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):238, 81

               
               
               Conread position:816-1131
               
               
               Cow position:chr13:1442100-1442412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:213
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):227, 73

               
               
               Conread position:817-1002
               
               
               Cow position:chr13:33501490-33501304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):116, 128

               
               
               Conread position:817-1057
               
               
               Cow position:chr13:59403462-59403230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:817-1084
               
               
               Cow position:chr13:4443162-4442901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):105, 37

               
               
               Conread position:817-1089
               
               
               Cow position:chr13:680757-681030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):237, 0

               
               
               Conread position:817-1108
               
               
               Cow position:chr13:54238738-54238445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:220
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):199, 69

               
               
               Conread position:818-958
               
               
               Cow position:chr13:15560296-15560436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:107
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:818-1108
               
               
               Cow position:chr13:50079859-50079570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):236, 79

               
               
               Conread position:819-1088
               
               
               Cow position:chr13:15430207-15429950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:202
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):232, 91

               
               
               Conread position:819-1089
               
               
               Cow position:chr13:45933457-45933730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:820-1001
               
               
               Cow position:chr13:30082239-30082060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:130
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):151, 46

               
               
               Conread position:820-1083
               
               
               Cow position:chr13:51482126-51481860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):53, 113

               
               
               Conread position:820-1089
               
               
               Cow position:chr13:34332403-34332665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):237, 130

               
               
               Conread position:820-1089
               
               
               Cow position:chr13:57431931-57431660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):213, 0

               
               
               Conread position:823-1069
               
               
               Cow position:chr13:9112487-9112734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):231, 0

               
               
               Conread position:824-1084
               
               
               Cow position:chr13:41568614-41568353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):37, 140

               
               
               Conread position:825-1082
               
               
               Cow position:chr13:19450067-19450331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:185
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):29, 87

               
               
               Conread position:828-1089
               
               
               Cow position:chr13:16249228-16248963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 76

               
               
               Conread position:828-1089
               
               
               Cow position:chr13:20242506-20242758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):230, 12

               
               
               Conread position:828-1089
               
               
               Cow position:chr13:32774628-32774370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:186
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):228, 0

               
               
               Conread position:828-1089
               
               
               Cow position:chr13:42250811-42250551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 0

               
               
               Conread position:829-1089
               
               
               Cow position:chr13:32008562-32008816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:173
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):209, 15

               
               
               Conread position:832-1084
               
               
               Cow position:chr13:3783857-3784106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:184
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):217, 0

               
               
               Conread position:833-1004
               
               
               Cow position:chr13:11290937-11291108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:120
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:837-1089
               
               
               Cow position:chr13:6719438-6719185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):217, 0

               
               
               Conread position:838-1083
               
               
               Cow position:chr13:52459431-52459188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:184
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):178, 95

               
               
               Conread position:838-1112
               
               
               Cow position:chr13:24237259-24237533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:196
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):80, 62

               
               
               Conread position:841-1089
               
               
               Cow position:chr13:17921788-17921534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:846-1088
               
               
               Cow position:chr13:60921018-60920788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):208, 29

               
               
               Conread position:846-1094
               
               
               Cow position:chr13:47574823-47574581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:183
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):147, 0

               
               
               Conread position:850-1088
               
               
               Cow position:chr13:42271877-42272113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:165
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:852-1089
               
               
               Cow position:chr13:2805540-2805303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:178
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):110, 28

               
               
               Conread position:854-1089
               
               
               Cow position:chr13:13126964-13126736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):57, 38

               
               
               Conread position:857-1089
               
               
               Cow position:chr13:34345050-34345283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):200, 0

               
               
               Conread position:857-1108
               
               
               Cow position:chr13:30279671-30279922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:166
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):197, 185

               
               
               Conread position:859-1089
               
               
               Cow position:chr13:46598546-46598315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:165
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):30, 105

               
               
               Conread position:861-1089
               
               
               Cow position:chr13:5622949-5622718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):186, 0

               
               
               Conread position:872-1089
               
               
               Cow position:chr13:19219354-19219139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):11, 19

               
               
               Conread position:874-1089
               
               
               Cow position:chr13:11053547-11053335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:165
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):180, 87

               
               
               Conread position:874-1110
               
               
               Cow position:chr13:57158793-57159027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):180, 72

               
               
               Conread position:875-1089
               
               
               Cow position:chr13:47577358-47577571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:164
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):179, 52

               
               
               Conread position:877-1089
               
               
               Cow position:chr13:8781674-8781887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:165
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):177, 0

               
               
               Conread position:877-1089
               
               
               Cow position:chr13:46055709-46055921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:165
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):176, 108

               
               
               Conread position:880-1089
               
               
               Cow position:chr13:33333605-33333402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):8, 70

               
               
               Conread position:882-1106
               
               
               Cow position:chr13:11826980-11826757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):172, 34

               
               
               Conread position:885-1089
               
               
               Cow position:chr13:504108-504313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:160
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):169, 0

               
               
               Conread position:885-1108
               
               
               Cow position:chr13:47006474-47006691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):208, 85

               
               
               Conread position:886-1089
               
               
               Cow position:chr13:19102898-19102694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):168, 0

               
               
               Conread position:894-1077
               
               
               Cow position:chr13:55337526-55337710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):160, 0

               
               
               Conread position:895-1089
               
               
               Cow position:chr13:58740361-58740554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):163, 98

               
               
               Conread position:901-1089
               
               
               Cow position:chr13:2726020-2725828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):153, 0

               
               
               Conread position:910-1049
               
               
               Cow position:chr13:49806263-49806124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:914-1051
               
               
               Cow position:chr13:32716966-32716829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:914-1089
               
               
               Cow position:chr13:22084579-22084749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:135
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:915-1089
               
               
               Cow position:chr13:5331142-5331317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):139, 0

               
               
               Conread position:916-1089
               
               
               Cow position:chr13:17485396-17485570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:125
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):121, 114

               
               
               Conread position:919-1089
               
               
               Cow position:chr13:644745-644916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):135, 0

               
               
               Conread position:920-1106
               
               
               Cow position:chr13:18815894-18815708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):59, 40

               
               
               Conread position:922-1089
               
               
               Cow position:chr13:18097811-18097643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):124, 133

               
               
               Conread position:924-1106
               
               
               Cow position:chr13:42088645-42088472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):131, 35

               
               
               Conread position:928-1089
               
               
               Cow position:chr13:838590-838428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:928-1089
               
               
               Cow position:chr13:19261468-19261306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:928-1089
               
               
               Cow position:chr13:56692087-56692249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:932-1120
               
               
               Cow position:chr13:45072186-45072374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):118, 167

               
               
               Conread position:933-1086
               
               
               Cow position:chr13:6601504-6601658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:934-1060
               
               
               Cow position:chr13:522469-522597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:100
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:942-1089
               
               
               Cow position:chr13:32922479-32922331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:120
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:945-1083
               
               
               Cow position:chr13:33907919-33907780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:106
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:949-1089
               
               
               Cow position:chr13:38013812-38013675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:958-1089
               
               
               Cow position:chr13:5498955-5498823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:106
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:969-1120
               
               
               Cow position:chr13:33501082-33500929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:113
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:741-1085
               
               
               Cow position:chr14:30581959-30581621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:177
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):313, 158

               
               
               Conread position:780-1083
               
               
               Cow position:chr14:32759961-32759662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:194
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):19, 24

               
               
               Conread position:781-1028
               
               
               Cow position:chr14:15181666-15181423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:782-989
               
               
               Cow position:chr14:35363325-35363122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):117, 12

               
               
               Conread position:782-1000
               
               
               Cow position:chr14:30703751-30703534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:169
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):156, 0

               
               
               Conread position:782-1021
               
               
               Cow position:chr14:37882292-37882532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:183
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:782-1050
               
               
               Cow position:chr14:45084176-45084442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):234, 173

               
               
               Conread position:782-1056
               
               
               Cow position:chr14:21047125-21046853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):34, 28

               
               
               Conread position:782-1076
               
               
               Cow position:chr14:34354042-34354315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:782-1076
               
               
               Cow position:chr14:48827747-48828042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):234, 18

               
               
               Conread position:782-1084
               
               
               Cow position:chr14:2292264-2292565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:200
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):255, 83

               
               
               Conread position:782-1084
               
               
               Cow position:chr14:13463940-13464241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):234, 97

               
               
               Conread position:782-1084
               
               
               Cow position:chr14:40476155-40475870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:222
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):272, 28

               
               
               Conread position:782-1089
               
               
               Cow position:chr14:7475400-7475706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):275, 46

               
               
               Conread position:782-1089
               
               
               Cow position:chr14:12740508-12740200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):272, 0

               
               
               Conread position:782-1089
               
               
               Cow position:chr14:19325718-19325410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):275, 0

               
               
               Conread position:782-1089
               
               
               Cow position:chr14:25363930-25363625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):272, 131

               
               
               Conread position:782-1089
               
               
               Cow position:chr14:25430188-25430499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):100, 137

               
               
               Conread position:782-1108
               
               
               Cow position:chr14:33281981-33281665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):28, 33

               
               
               Conread position:782-1118
               
               
               Cow position:chr14:36710521-36710182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 0

               
               
               Conread position:782-1123
               
               
               Cow position:chr14:30476794-30476458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):275, 68

               
               
               Conread position:782-1123
               
               
               Cow position:chr14:47450033-47450376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:213
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):36, 28

               
               
               Conread position:783-908
               
               
               Cow position:chr14:28285008-28284883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:99
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-949
               
               
               Cow position:chr14:192711-192877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-981
               
               
               Cow position:chr14:45165562-45165759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):196, 87

               
               
               Conread position:783-993
               
               
               Cow position:chr14:44261008-44261218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-1003
               
               
               Cow position:chr14:34055047-34055267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:155
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-1004
               
               
               Cow position:chr14:28210458-28210679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-1008
               
               
               Cow position:chr14:20562332-20562097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):86, 137

               
               
               Conread position:783-1014
               
               
               Cow position:chr14:34668248-34668017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-1016
               
               
               Cow position:chr14:43795063-43794831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:783-1035
               
               
               Cow position:chr14:12066937-12066694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):10, 15

               
               
               Conread position:783-1037
               
               
               Cow position:chr14:44293177-44293430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:185
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:783-1068
               
               
               Cow position:chr14:35603637-35603915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:202
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:783-1068
               
               
               Cow position:chr14:37256700-37256981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:204
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):270, 66

               
               
               Conread position:783-1069
               
               
               Cow position:chr14:7226950-7227237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1075
               
               
               Cow position:chr14:44236193-44236483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:206
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):275, 51

               
               
               Conread position:783-1076
               
               
               Cow position:chr14:16037142-16037435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-1076
               
               
               Cow position:chr14:44077143-44076849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 14

               
               
               Conread position:783-1077
               
               
               Cow position:chr14:22104015-22103720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1080
               
               
               Cow position:chr14:33582269-33581963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:220
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):59, 187

               
               
               Conread position:783-1082
               
               
               Cow position:chr14:48491109-48491411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):223, 210

               
               
               Conread position:783-1082
               
               
               Cow position:chr14:48494788-48495084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 215

               
               
               Conread position:783-1083
               
               
               Cow position:chr14:25166231-25166531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 20

               
               
               Conread position:783-1083
               
               
               Cow position:chr14:46123661-46123954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):296, 178

               
               
               Conread position:783-1084
               
               
               Cow position:chr14:16917184-16916883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 131

               
               
               Conread position:783-1084
               
               
               Cow position:chr14:16997497-16997194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 22

               
               
               Conread position:783-1084
               
               
               Cow position:chr14:19489524-19489825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 114

               
               
               Conread position:783-1084
               
               
               Cow position:chr14:37136352-37136647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:216
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):271, 22

               
               
               Conread position:783-1084
               
               
               Cow position:chr14:38226459-38226159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:209
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):148, 0

               
               
               Conread position:783-1084
               
               
               Cow position:chr14:40968697-40968999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1084
               
               
               Cow position:chr14:41478291-41478593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1087
               
               
               Cow position:chr14:21200463-21200770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:783-1087
               
               
               Cow position:chr14:45576194-45576493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 88

               
               
               Conread position:783-1087
               
               
               Cow position:chr14:47567488-47567812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:783-1088
               
               
               Cow position:chr14:28208742-28208433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr14:749057-748749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):197, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr14:2288795-2289102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr14:5531882-5532189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr14:5644948-5645255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 18

               
               
               Conread position:783-1089
               
               
               Cow position:chr14:9047380-9047687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr14:9811223-9811530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr14:11151372-11151067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):182, 74

               
               
               Conread position:783-1089
               
               
               Cow position:chr14:11564081-11564384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:218
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):133, 29

               
               
               Conread position:783-1089
               
               
               Cow position:chr14:12902871-12903183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr14:13237257-13236950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr14:13275616-13275922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):169, 141

               
               
               Conread position:783-1089
               
               
               Cow position:chr14:13308274-13308581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):273, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr14:13619891-13619594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):142, 228

               
               
               Conread position:783-1089
               
               
               Cow position:chr14:13683108-13683415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr14:13769749-13769442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):139, 195

               
               
               Conread position:783-1089
               
               
               Cow position:chr14:15272719-15272413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 180

               
               
               Conread position:783-1089
               
               
               Cow position:chr14:15337091-15336784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr14:17488782-17488490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 51

               
               
               Conread position:783-1089
               
               
               Cow position:chr14:17762844-17762540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):267, 118

               
               
               Conread position:783-1089
               
               
               Cow position:chr14:17771641-17771328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:213
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):59, 159

               
               
               Conread position:783-1089
               
               
               Cow position:chr14:19418636-19418943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):272, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr14:21533685-21533987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):259, 136

               
               
               Conread position:783-1089
               
               
               Cow position:chr14:21541367-21541063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):225, 254

               
               
               Conread position:783-1089
               
               
               Cow position:chr14:21688804-21689099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:217
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):303, 73

               
               
               Conread position:783-1089
               
               
               Cow position:chr14:22027230-22026925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 283

               
               
               Conread position:783-1089
               
               
               Cow position:chr14:23254796-23254489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):275, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr14:28351155-28350849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 13

               
               
               Conread position:783-1089
               
               
               Cow position:chr14:28691511-28691204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):10, 18

               
               
               Conread position:783-1089
               
               
               Cow position:chr14:29045131-29044824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr14:29641667-29641973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):254, 124

               
               
               Conread position:783-1089
               
               
               Cow position:chr14:30593718-30593415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 187

               
               
               Conread position:783-1089
               
               
               Cow position:chr14:31882346-31882039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr14:32449511-32449805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):242, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr14:32584483-32584176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr14:33679591-33679895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 163

               
               
               Conread position:783-1089
               
               
               Cow position:chr14:34629660-34629346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr14:34906068-34906374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 18

               
               
               Conread position:783-1089
               
               
               Cow position:chr14:37226715-37227022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):273, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr14:37981782-37981475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):273, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr14:38149667-38149970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:208
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):11, 63

               
               
               Conread position:783-1089
               
               
               Cow position:chr14:38238554-38238247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr14:38459610-38459304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 180

               
               
               Conread position:783-1089
               
               
               Cow position:chr14:38915533-38915232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 55

               
               
               Conread position:783-1089
               
               
               Cow position:chr14:40720419-40720720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):78, 71

               
               
               Conread position:783-1089
               
               
               Cow position:chr14:41445547-41445854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr14:43560749-43561052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 7

               
               
               Conread position:783-1089
               
               
               Cow position:chr14:44254281-44253965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:217
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):106, 80

               
               
               Conread position:783-1089
               
               
               Cow position:chr14:44482090-44482397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):232, 283

               
               
               Conread position:783-1089
               
               
               Cow position:chr14:44583781-44584093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):75, 106

               
               
               Conread position:783-1089
               
               
               Cow position:chr14:44691715-44692014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 235

               
               
               Conread position:783-1089
               
               
               Cow position:chr14:44773278-44772980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):136, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr14:45026084-45025780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 70

               
               
               Conread position:783-1089
               
               
               Cow position:chr14:45739778-45739473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 15

               
               
               Conread position:783-1089
               
               
               Cow position:chr14:45789520-45789820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 67

               
               
               Conread position:783-1089
               
               
               Cow position:chr14:46302447-46302753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):136, 141

               
               
               Conread position:783-1089
               
               
               Cow position:chr14:46375855-46376159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):275, 87

               
               
               Conread position:783-1089
               
               
               Cow position:chr14:47579160-47579467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr14:48251906-48251599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):160, 74

               
               
               Conread position:783-1089
               
               
               Cow position:chr14:50029275-50028972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):273, 114

               
               
               Conread position:783-1089
               
               
               Cow position:chr14:50136814-50137120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-1090
               
               
               Cow position:chr14:1660998-1661296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 87

               
               
               Conread position:783-1090
               
               
               Cow position:chr14:13282332-13282635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:213
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):271, 124

               
               
               Conread position:783-1090
               
               
               Cow position:chr14:27040841-27040533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):267, 0

               
               
               Conread position:783-1090
               
               
               Cow position:chr14:38435575-38435881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 118

               
               
               Conread position:783-1091
               
               
               Cow position:chr14:9512388-9512081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):275, 0

               
               
               Conread position:783-1091
               
               
               Cow position:chr14:50121875-50121573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 186

               
               
               Conread position:783-1094
               
               
               Cow position:chr14:35419423-35419724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:218
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:783-1094
               
               
               Cow position:chr14:46303248-46303564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):150, 111

               
               
               Conread position:783-1095
               
               
               Cow position:chr14:19549737-19550049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 309

               
               
               Conread position:783-1095
               
               
               Cow position:chr14:46636990-46636681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):142, 149

               
               
               Conread position:783-1100
               
               
               Cow position:chr14:30738195-30738513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):87, 119

               
               
               Conread position:783-1108
               
               
               Cow position:chr14:17689671-17689996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 104

               
               
               Conread position:783-1108
               
               
               Cow position:chr14:34674643-34674968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 254

               
               
               Conread position:783-1109
               
               
               Cow position:chr14:28580533-28580212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:209
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):197, 55

               
               
               Conread position:783-1109
               
               
               Cow position:chr14:28587737-28587416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:209
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):197, 55

               
               
               Conread position:783-1113
               
               
               Cow position:chr14:8103131-8102799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 53

               
               
               Conread position:783-1118
               
               
               Cow position:chr14:49218882-49219211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:232
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):271, 89

               
               
               Conread position:784-998
               
               
               Cow position:chr14:36344728-36344521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):196, 84

               
               
               Conread position:784-1076
               
               
               Cow position:chr14:9449986-9449697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):270, 151

               
               
               Conread position:784-1089
               
               
               Cow position:chr14:12545207-12545513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):227, 221

               
               
               Conread position:784-1089
               
               
               Cow position:chr14:12859095-12858788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):158, 0

               
               
               Conread position:784-1089
               
               
               Cow position:chr14:20706237-20706532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):272, 217

               
               
               Conread position:784-1089
               
               
               Cow position:chr14:34167845-34168148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):270, 154

               
               
               Conread position:785-1020
               
               
               Cow position:chr14:33673134-33673360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:173
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):221, 5

               
               
               Conread position:785-1066
               
               
               Cow position:chr14:26497229-26496949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):269, 86

               
               
               Conread position:785-1084
               
               
               Cow position:chr14:14030856-14030561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:207
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):35, 54

               
               
               Conread position:785-1084
               
               
               Cow position:chr14:23528448-23528152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:190
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):269, 55

               
               
               Conread position:785-1084
               
               
               Cow position:chr14:45996997-45996699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 18

               
               
               Conread position:785-1087
               
               
               Cow position:chr14:44554405-44554693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):237, 11

               
               
               Conread position:785-1089
               
               
               Cow position:chr14:1726691-1726995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):272, 162

               
               
               Conread position:785-1089
               
               
               Cow position:chr14:10310099-10310408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 0

               
               
               Conread position:785-1089
               
               
               Cow position:chr14:13860997-13860692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):272, 0

               
               
               Conread position:785-1089
               
               
               Cow position:chr14:27052634-27052332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):229, 169

               
               
               Conread position:785-1089
               
               
               Cow position:chr14:34394282-34394587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 270

               
               
               Conread position:785-1089
               
               
               Cow position:chr14:50069648-50069349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):137, 147

               
               
               Conread position:786-1044
               
               
               Cow position:chr14:20785640-20785898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:786-1084
               
               
               Cow position:chr14:18950870-18951164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:199
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):224, 103

               
               
               Conread position:786-1089
               
               
               Cow position:chr14:11474745-11474441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:786-1089
               
               
               Cow position:chr14:48401334-48401033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:211
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):224, 93

               
               
               Conread position:787-997
               
               
               Cow position:chr14:41766620-41766829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:155
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):134, 126

               
               
               Conread position:792-968
               
               
               Cow position:chr14:10350327-10350150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:792-1089
               
               
               Cow position:chr14:38813164-38812867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 233

               
               
               Conread position:792-1089
               
               
               Cow position:chr14:50144778-50145075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):262, 8

               
               
               Conread position:793-1004
               
               
               Cow position:chr14:12802052-12801844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):17, 28

               
               
               Conread position:793-1027
               
               
               Cow position:chr14:9254082-9254315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:173
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):145, 0

               
               
               Conread position:796-1089
               
               
               Cow position:chr14:8900720-8900427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):261, 96

               
               
               Conread position:797-1089
               
               
               Cow position:chr14:45192088-45192375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):155, 6

               
               
               Conread position:800-1003
               
               
               Cow position:chr14:35502378-35502585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:144
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:802-1028
               
               
               Cow position:chr14:35291967-35291743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):209, 142

               
               
               Conread position:802-1069
               
               
               Cow position:chr14:2297248-2297515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):117, 125

               
               
               Conread position:802-1069
               
               
               Cow position:chr14:14666806-14666533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):8, 13

               
               
               Conread position:802-1076
               
               
               Cow position:chr14:14082318-14082593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):252, 0

               
               
               Conread position:802-1082
               
               
               Cow position:chr14:38043793-38044070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):119, 22

               
               
               Conread position:802-1084
               
               
               Cow position:chr14:47602743-47603019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):96, 49

               
               
               Conread position:802-1089
               
               
               Cow position:chr14:30464401-30464683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:186
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):253, 84

               
               
               Conread position:802-1089
               
               
               Cow position:chr14:41717648-41717363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):42, 156

               
               
               Conread position:802-1089
               
               
               Cow position:chr14:50113931-50114216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):255, 32

               
               
               Conread position:803-1108
               
               
               Cow position:chr14:21390780-21390494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:221
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:805-1089
               
               
               Cow position:chr14:29891471-29891192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:207
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):203, 77

               
               
               Conread position:805-1089
               
               
               Cow position:chr14:39321406-39321690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):249, 89

               
               
               Conread position:805-1090
               
               
               Cow position:chr14:35428063-35428342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):19, 84

               
               
               Conread position:809-1084
               
               
               Cow position:chr14:49328542-49328816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):249, 138

               
               
               Conread position:810-1089
               
               
               Cow position:chr14:46548711-46548981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:183
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:812-1069
               
               
               Cow position:chr14:35301454-35301198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):194, 22

               
               
               Conread position:812-1089
               
               
               Cow position:chr14:32499741-32500021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 19

               
               
               Conread position:812-1096
               
               
               Cow position:chr14:8517086-8517372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):214, 0

               
               
               Conread position:813-1068
               
               
               Cow position:chr14:7646697-7646947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:182
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):120, 93

               
               
               Conread position:813-1076
               
               
               Cow position:chr14:17757467-17757204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):241, 101

               
               
               Conread position:813-1124
               
               
               Cow position:chr14:29773564-29773246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:224
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):62, 179

               
               
               Conread position:817-1016
               
               
               Cow position:chr14:34762848-34762649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:156
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:817-1081
               
               
               Cow position:chr14:14420829-14420564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:187
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):237, 0

               
               
               Conread position:817-1084
               
               
               Cow position:chr14:45187257-45186991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):237, 13

               
               
               Conread position:817-1089
               
               
               Cow position:chr14:8998191-8998464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):240, 0

               
               
               Conread position:817-1089
               
               
               Cow position:chr14:12945210-12944948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):237, 126

               
               
               Conread position:818-1084
               
               
               Cow position:chr14:12612810-12613075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:191
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):218, 152

               
               
               Conread position:819-1089
               
               
               Cow position:chr14:42150057-42150322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:820-1112
               
               
               Cow position:chr14:41477520-41477806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):235, 10

               
               
               Conread position:822-1089
               
               
               Cow position:chr14:10819818-10820091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):85, 25

               
               
               Conread position:824-1063
               
               
               Cow position:chr14:43863515-43863275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):233, 0

               
               
               Conread position:824-1088
               
               
               Cow position:chr14:9848970-9848707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):35, 116

               
               
               Conread position:825-1062
               
               
               Cow position:chr14:35382892-35382655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):30, 92

               
               
               Conread position:825-1089
               
               
               Cow position:chr14:9876749-9876489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:178
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):193, 0

               
               
               Conread position:825-1127
               
               
               Cow position:chr14:30665335-30665042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:175
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:826-965
               
               
               Cow position:chr14:25614836-25614698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):136, 104

               
               
               Conread position:829-1089
               
               
               Cow position:chr14:25259579-25259839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:175
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):204, 28

               
               
               Conread position:832-1066
               
               
               Cow position:chr14:21745835-21746068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):213, 129

               
               
               Conread position:835-1089
               
               
               Cow position:chr14:47938499-47938248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):220, 7

               
               
               Conread position:838-1089
               
               
               Cow position:chr14:12616652-12616402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):216, 15

               
               
               Conread position:838-1089
               
               
               Cow position:chr14:42259068-42259319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:173
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):216, 125

               
               
               Conread position:839-1089
               
               
               Cow position:chr14:39773178-39773420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:188
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):217, 87

               
               
               Conread position:844-1118
               
               
               Cow position:chr14:46488773-46489048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:190
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):210, 0

               
               
               Conread position:846-1089
               
               
               Cow position:chr14:13369832-13370076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:187
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):208, 0

               
               
               Conread position:849-1089
               
               
               Cow position:chr14:29726491-29726730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):173, 21

               
               
               Conread position:850-1089
               
               
               Cow position:chr14:11462471-11462231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:183
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):204, 0

               
               
               Conread position:850-1089
               
               
               Cow position:chr14:41798070-41798310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:160
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):204, 146

               
               
               Conread position:850-1089
               
               
               Cow position:chr14:44027207-44026966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):201, 0

               
               
               Conread position:850-1089
               
               
               Cow position:chr14:46959996-46960236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:186
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):204, 0

               
               
               Conread position:852-1084
               
               
               Cow position:chr14:24922394-24922627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):202, 0

               
               
               Conread position:854-1067
               
               
               Cow position:chr14:40345141-40345346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):200, 56

               
               
               Conread position:854-1089
               
               
               Cow position:chr14:8397167-8396931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:186
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):200, 0

               
               
               Conread position:854-1089
               
               
               Cow position:chr14:9745004-9744768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:183
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):200, 0

               
               
               Conread position:857-1069
               
               
               Cow position:chr14:22050330-22050130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):122, 53

               
               
               Conread position:857-1084
               
               
               Cow position:chr14:20747199-20746973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):152, 24

               
               
               Conread position:857-1089
               
               
               Cow position:chr14:5075606-5075838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:157
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):47, 162

               
               
               Conread position:857-1089
               
               
               Cow position:chr14:39301084-39301316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:174
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):197, 209

               
               
               Conread position:861-1088
               
               
               Cow position:chr14:38405597-38405824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:168
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):54, 41

               
               
               Conread position:868-1089
               
               
               Cow position:chr14:13415918-13416139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:121
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:872-1076
               
               
               Cow position:chr14:16848438-16848647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:873-1084
               
               
               Cow position:chr14:14075744-14075948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:874-1083
               
               
               Cow position:chr14:8885247-8885038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):183, 72

               
               
               Conread position:874-1089
               
               
               Cow position:chr14:8924729-8924945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:170
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 0

               
               
               Conread position:875-1094
               
               
               Cow position:chr14:36288935-36289150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:159
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:876-1089
               
               
               Cow position:chr14:41755685-41755899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:162
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):181, 0

               
               
               Conread position:878-1089
               
               
               Cow position:chr14:24836439-24836655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:165
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:878-1089
               
               
               Cow position:chr14:44367314-44367526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:160
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):175, 0

               
               
               Conread position:880-1089
               
               
               Cow position:chr14:12483045-12483250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:165
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):178, 40

               
               
               Conread position:880-1089
               
               
               Cow position:chr14:28116697-28116910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:166
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):16, 9

               
               
               Conread position:880-1122
               
               
               Cow position:chr14:43564074-43564317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):174, 185

               
               
               Conread position:892-1089
               
               
               Cow position:chr14:13811384-13811186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):70, 15

               
               
               Conread position:894-1089
               
               
               Cow position:chr14:22690242-22690046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):163, 0

               
               
               Conread position:894-1089
               
               
               Cow position:chr14:48572705-48572509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):160, 0

               
               
               Conread position:901-1089
               
               
               Cow position:chr14:31289519-31289708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):153, 0

               
               
               Conread position:903-1075
               
               
               Cow position:chr14:21596748-21596573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):151, 0

               
               
               Conread position:909-1108
               
               
               Cow position:chr14:20773834-20774035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):102, 8

               
               
               Conread position:920-1089
               
               
               Cow position:chr14:423866-424035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:135
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):134, 26

               
               
               Conread position:927-1089
               
               
               Cow position:chr14:42626989-42626828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):127, 41

               
               
               Conread position:928-1089
               
               
               Cow position:chr14:5994306-5994468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:129
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:928-1089
               
               
               Cow position:chr14:31155512-31155674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:130
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:928-1089
               
               
               Cow position:chr14:35016046-35016208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:130
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:928-1089
               
               
               Cow position:chr14:49995856-49995694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:128
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):129, 0

               
               
               Conread position:935-1089
               
               
               Cow position:chr14:28993654-28993499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:936-1089
               
               
               Cow position:chr14:38651606-38651760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:123
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:937-1084
               
               
               Cow position:chr14:47042760-47042907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):117, 37

               
               
               Conread position:942-1089
               
               
               Cow position:chr14:41220347-41220199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:945-1089
               
               
               Cow position:chr14:33835306-33835161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:954-1083
               
               
               Cow position:chr14:12833565-12833693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:101
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):103, 64

               
               
               Conread position:956-1089
               
               
               Cow position:chr14:192865-192999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:958-1089
               
               
               Cow position:chr14:9482668-9482800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:107
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:972-1089
               
               
               Cow position:chr14:2839314-2839432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:97
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:983-1094
               
               
               Cow position:chr14:446526-446414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:92
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):44, 110

               
               
               Conread position:782-961
               
               
               Cow position:chr15:37406784-37406607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:126
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:782-1003
               
               
               Cow position:chr15:34955456-34955675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:782-1003
               
               
               Cow position:chr15:53575125-53574902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:155
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):169, 59

               
               
               Conread position:782-1036
               
               
               Cow position:chr15:2015041-2015290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:190
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):139, 13

               
               
               Conread position:782-1066
               
               
               Cow position:chr15:9389705-9389988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):251, 83

               
               
               Conread position:782-1069
               
               
               Cow position:chr15:30639120-30638844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:199
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):198, 59

               
               
               Conread position:782-1076
               
               
               Cow position:chr15:7508630-7508345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):271, 31

               
               
               Conread position:782-1076
               
               
               Cow position:chr15:23216191-23215900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):257, 47

               
               
               Conread position:782-1077
               
               
               Cow position:chr15:443242-442946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):272, 0

               
               
               Conread position:782-1084
               
               
               Cow position:chr15:4629691-4629398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:214
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):272, 202

               
               
               Conread position:782-1084
               
               
               Cow position:chr15:19654594-19654898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):131, 55

               
               
               Conread position:782-1084
               
               
               Cow position:chr15:20329855-20329566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:206
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):9, 154

               
               
               Conread position:782-1087
               
               
               Cow position:chr15:502859-503163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):272, 18

               
               
               Conread position:782-1089
               
               
               Cow position:chr15:8359194-8359500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):55, 90

               
               
               Conread position:782-1089
               
               
               Cow position:chr15:21533586-21533284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):272, 98

               
               
               Conread position:782-1089
               
               
               Cow position:chr15:51220286-51220595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:782-1112
               
               
               Cow position:chr15:11291215-11290894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:231
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):272, 107

               
               
               Conread position:783-908
               
               
               Cow position:chr15:25204463-25204338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:101
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-908
               
               
               Cow position:chr15:31364012-31364137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:99
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-908
               
               
               Cow position:chr15:50308954-50308829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:100
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-917
               
               
               Cow position:chr15:24297732-24297862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:783-939
               
               
               Cow position:chr15:11269549-11269705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-945
               
               
               Cow position:chr15:6153385-6153223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:126
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-949
               
               
               Cow position:chr15:52209086-52209252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:128
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-965
               
               
               Cow position:chr15:10826022-10826205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):179, 0

               
               
               Conread position:783-967
               
               
               Cow position:chr15:32741513-32741697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-977
               
               
               Cow position:chr15:6488005-6488197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):154, 0

               
               
               Conread position:783-977
               
               
               Cow position:chr15:8060516-8060703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:134
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:783-978
               
               
               Cow position:chr15:3792348-3792153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-982
               
               
               Cow position:chr15:52977503-52977702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-998
               
               
               Cow position:chr15:22540271-22540056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:168
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-999
               
               
               Cow position:chr15:6381501-6381286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:167
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:783-1000
               
               
               Cow position:chr15:23708966-23708749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:169
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-1003
               
               
               Cow position:chr15:1775689-1775908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:156
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:783-1003
               
               
               Cow position:chr15:3564215-3563997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:783-1003
               
               
               Cow position:chr15:44781609-44781831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:147
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:783-1004
               
               
               Cow position:chr15:14579599-14579385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:783-1029
               
               
               Cow position:chr15:42827627-42827870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):126, 20

               
               
               Conread position:783-1035
               
               
               Cow position:chr15:4768728-4768979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:182
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):180, 0

               
               
               Conread position:783-1035
               
               
               Cow position:chr15:13388826-13388569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:783-1035
               
               
               Cow position:chr15:21645557-21645305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-1044
               
               
               Cow position:chr15:16966949-16966692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):136, 73

               
               
               Conread position:783-1044
               
               
               Cow position:chr15:18660863-18661124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-1044
               
               
               Cow position:chr15:53212180-53211928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:783-1049
               
               
               Cow position:chr15:25165740-25165474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-1054
               
               
               Cow position:chr15:7236851-7237115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:198
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):10, 18

               
               
               Conread position:783-1056
               
               
               Cow position:chr15:20405070-20404800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):210, 0

               
               
               Conread position:783-1060
               
               
               Cow position:chr15:6281199-6281475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:202
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):35, 51

               
               
               Conread position:783-1060
               
               
               Cow position:chr15:7940973-7941250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 74

               
               
               Conread position:783-1066
               
               
               Cow position:chr15:51631691-51631971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 88

               
               
               Conread position:783-1069
               
               
               Cow position:chr15:7270884-7271168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 74

               
               
               Conread position:783-1075
               
               
               Cow position:chr15:5243483-5243193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 36

               
               
               Conread position:783-1075
               
               
               Cow position:chr15:28487582-28487290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-1076
               
               
               Cow position:chr15:18019835-18019543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:207
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):271, 121

               
               
               Conread position:783-1077
               
               
               Cow position:chr15:3892111-3892427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):137, 63

               
               
               Conread position:783-1077
               
               
               Cow position:chr15:6762550-6762255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1077
               
               
               Cow position:chr15:32714249-32714544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1077
               
               
               Cow position:chr15:35416143-35416435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 74

               
               
               Conread position:783-1077
               
               
               Cow position:chr15:36940836-36940541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1080
               
               
               Cow position:chr15:15649869-15649582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:198
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):138, 116

               
               
               Conread position:783-1081
               
               
               Cow position:chr15:2410166-2409876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:199
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):85, 32

               
               
               Conread position:783-1081
               
               
               Cow position:chr15:21367073-21366775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:197
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):189, 179

               
               
               Conread position:783-1082
               
               
               Cow position:chr15:44072993-44073293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1083
               
               
               Cow position:chr15:1081991-1082284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 13

               
               
               Conread position:783-1083
               
               
               Cow position:chr15:1129437-1129144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 13

               
               
               Conread position:783-1083
               
               
               Cow position:chr15:4895821-4895521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:223
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):10, 18

               
               
               Conread position:783-1083
               
               
               Cow position:chr15:4917736-4918032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:213
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):271, 59

               
               
               Conread position:783-1083
               
               
               Cow position:chr15:8753423-8753709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:213
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):9, 116

               
               
               Conread position:783-1083
               
               
               Cow position:chr15:10736104-10736415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 238

               
               
               Conread position:783-1083
               
               
               Cow position:chr15:17287546-17287840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:199
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):10, 75

               
               
               Conread position:783-1083
               
               
               Cow position:chr15:32858412-32858714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1083
               
               
               Cow position:chr15:36670715-36671023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:783-1084
               
               
               Cow position:chr15:60176-60480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 187

               
               
               Conread position:783-1084
               
               
               Cow position:chr15:2633163-2632860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):227, 237

               
               
               Conread position:783-1084
               
               
               Cow position:chr15:4828871-4829184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:218
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):28, 12

               
               
               Conread position:783-1084
               
               
               Cow position:chr15:8029462-8029162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 283

               
               
               Conread position:783-1084
               
               
               Cow position:chr15:13679929-13680223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):271, 67

               
               
               Conread position:783-1084
               
               
               Cow position:chr15:17267059-17267362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:783-1084
               
               
               Cow position:chr15:46231043-46231346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:203
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):77, 159

               
               
               Conread position:783-1085
               
               
               Cow position:chr15:21966580-21966883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):102, 88

               
               
               Conread position:783-1087
               
               
               Cow position:chr15:7565549-7565854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1088
               
               
               Cow position:chr15:3754521-3754825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:201
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):70, 74

               
               
               Conread position:783-1089
               
               
               Cow position:chr15:29762-29455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr15:313254-312948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):139, 149

               
               
               Conread position:783-1089
               
               
               Cow position:chr15:481130-481437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr15:1785315-1785619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 51

               
               
               Conread position:783-1089
               
               
               Cow position:chr15:2644800-2644493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr15:2663934-2664241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr15:2898444-2898144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 18

               
               
               Conread position:783-1089
               
               
               Cow position:chr15:2899709-2899405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 43

               
               
               Conread position:783-1089
               
               
               Cow position:chr15:2952604-2952295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:211
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):173, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr15:3153018-3152713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):170, 110

               
               
               Conread position:783-1089
               
               
               Cow position:chr15:3257962-3257652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr15:4077588-4077276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:223
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):88, 79

               
               
               Conread position:783-1089
               
               
               Cow position:chr15:4081548-4081854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):269, 226

               
               
               Conread position:783-1089
               
               
               Cow position:chr15:4140363-4140056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr15:4219368-4219061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr15:4388294-4388600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 17

               
               
               Conread position:783-1089
               
               
               Cow position:chr15:4641749-4642056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr15:4860399-4860096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):34, 86

               
               
               Conread position:783-1089
               
               
               Cow position:chr15:4924710-4925011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 81

               
               
               Conread position:783-1089
               
               
               Cow position:chr15:5019938-5020225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 155

               
               
               Conread position:783-1089
               
               
               Cow position:chr15:5641045-5640738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):194, 67

               
               
               Conread position:783-1089
               
               
               Cow position:chr15:6482039-6482331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:214
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):275, 31

               
               
               Conread position:783-1089
               
               
               Cow position:chr15:6551070-6550761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 77

               
               
               Conread position:783-1089
               
               
               Cow position:chr15:6589386-6589080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 288

               
               
               Conread position:783-1089
               
               
               Cow position:chr15:6616344-6616651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr15:6805260-6805565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):270, 74

               
               
               Conread position:783-1089
               
               
               Cow position:chr15:7267149-7267454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):230, 46

               
               
               Conread position:783-1089
               
               
               Cow position:chr15:7587235-7586928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr15:8102002-8102304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 22

               
               
               Conread position:783-1089
               
               
               Cow position:chr15:8628856-8629161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):245, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr15:9522656-9522347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):136, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr15:12418162-12417857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 219

               
               
               Conread position:783-1089
               
               
               Cow position:chr15:12858688-12858994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr15:13286556-13286253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):270, 112

               
               
               Conread position:783-1089
               
               
               Cow position:chr15:13430370-13430677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):173, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr15:15344557-15344250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr15:16800820-16801127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr15:17074816-17074510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 283

               
               
               Conread position:783-1089
               
               
               Cow position:chr15:17295553-17295853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:215
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):270, 184

               
               
               Conread position:783-1089
               
               
               Cow position:chr15:18229612-18229918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 28

               
               
               Conread position:783-1089
               
               
               Cow position:chr15:18265215-18264909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):275, 290

               
               
               Conread position:783-1089
               
               
               Cow position:chr15:19724321-19724621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):270, 74

               
               
               Conread position:783-1089
               
               
               Cow position:chr15:21806395-21806702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr15:23173522-23173216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:213
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):232, 266

               
               
               Conread position:783-1089
               
               
               Cow position:chr15:23666948-23666641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr15:23797675-23797985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):139, 49

               
               
               Conread position:783-1089
               
               
               Cow position:chr15:24090374-24090681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr15:25069948-25069641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr15:25132502-25132810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr15:26591800-26591493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr15:31270325-31270018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):133, 127

               
               
               Conread position:783-1089
               
               
               Cow position:chr15:31585852-31585545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr15:33753734-33753427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr15:35750749-35750443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 208

               
               
               Conread position:783-1089
               
               
               Cow position:chr15:36329914-36329607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr15:42532596-42532903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr15:42939462-42939764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 231

               
               
               Conread position:783-1089
               
               
               Cow position:chr15:42944060-42943753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr15:50120199-50119891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):221, 27

               
               
               Conread position:783-1090
               
               
               Cow position:chr15:1601132-1601420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:213
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:783-1090
               
               
               Cow position:chr15:1773992-1774302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):216, 0

               
               
               Conread position:783-1094
               
               
               Cow position:chr15:47202018-47201711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 81

               
               
               Conread position:783-1095
               
               
               Cow position:chr15:23773852-23774161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 193

               
               
               Conread position:783-1106
               
               
               Cow position:chr15:5497607-5497929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 106

               
               
               Conread position:783-1106
               
               
               Cow position:chr15:24286955-24286651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):271, 55

               
               
               Conread position:783-1107
               
               
               Cow position:chr15:2617519-2617200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):273, 57

               
               
               Conread position:783-1107
               
               
               Cow position:chr15:5983188-5983498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:234
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):271, 20

               
               
               Conread position:783-1108
               
               
               Cow position:chr15:68013-67687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):270, 0

               
               
               Conread position:783-1108
               
               
               Cow position:chr15:2021897-2021575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:783-1108
               
               
               Cow position:chr15:4380777-4380451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 310

               
               
               Conread position:783-1108
               
               
               Cow position:chr15:6384008-6383673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:227
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):71, 45

               
               
               Conread position:783-1108
               
               
               Cow position:chr15:6648860-6648538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 46

               
               
               Conread position:783-1108
               
               
               Cow position:chr15:7319114-7319438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 180

               
               
               Conread position:783-1108
               
               
               Cow position:chr15:13546502-13546180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):267, 149

               
               
               Conread position:783-1108
               
               
               Cow position:chr15:13682882-13683215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):168, 0

               
               
               Conread position:783-1108
               
               
               Cow position:chr15:24796415-24796737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 156

               
               
               Conread position:783-1108
               
               
               Cow position:chr15:32718063-32717739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):275, 121

               
               
               Conread position:783-1108
               
               
               Cow position:chr15:34517685-34518004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):232, 124

               
               
               Conread position:783-1108
               
               
               Cow position:chr15:35643903-35643579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 53

               
               
               Conread position:783-1108
               
               
               Cow position:chr15:51910988-51910664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):200, 192

               
               
               Conread position:783-1109
               
               
               Cow position:chr15:21830485-21830814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:230
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):10, 18

               
               
               Conread position:783-1110
               
               
               Cow position:chr15:21825411-21825739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 300

               
               
               Conread position:783-1112
               
               
               Cow position:chr15:38983206-38983537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 0

               
               
               Conread position:783-1120
               
               
               Cow position:chr15:21663196-21662858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 309

               
               
               Conread position:784-946
               
               
               Cow position:chr15:29341502-29341338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):129, 54

               
               
               Conread position:784-963
               
               
               Cow position:chr15:20779641-20779471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):31, 21

               
               
               Conread position:784-1077
               
               
               Cow position:chr15:49198982-49199260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:198
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):276, 120

               
               
               Conread position:784-1085
               
               
               Cow position:chr15:41359552-41359852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):270, 144

               
               
               Conread position:784-1089
               
               
               Cow position:chr15:14573756-14573454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):270, 170

               
               
               Conread position:784-1089
               
               
               Cow position:chr15:18579273-18579579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 17

               
               
               Conread position:784-1089
               
               
               Cow position:chr15:21636820-21637124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):270, 73

               
               
               Conread position:784-1089
               
               
               Cow position:chr15:30044944-30045251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 121

               
               
               Conread position:784-1089
               
               
               Cow position:chr15:33229506-33229198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):165, 96

               
               
               Conread position:784-1089
               
               
               Cow position:chr15:39091663-39091345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 121

               
               
               Conread position:784-1108
               
               
               Cow position:chr15:50151247-50151572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 26

               
               
               Conread position:785-1034
               
               
               Cow position:chr15:3833654-3833404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):34, 137

               
               
               Conread position:785-1051
               
               
               Cow position:chr15:1328391-1328653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 0

               
               
               Conread position:785-1062
               
               
               Cow position:chr15:7840882-7841160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):272, 0

               
               
               Conread position:785-1075
               
               
               Cow position:chr15:4788250-4787960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:785-1082
               
               
               Cow position:chr15:4815108-4815405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 119

               
               
               Conread position:785-1089
               
               
               Cow position:chr15:6463633-6463926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):269, 84

               
               
               Conread position:785-1089
               
               
               Cow position:chr15:7058275-7058580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 92

               
               
               Conread position:785-1089
               
               
               Cow position:chr15:7963487-7963182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):268, 0

               
               
               Conread position:785-1089
               
               
               Cow position:chr15:17035083-17034774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):189, 0

               
               
               Conread position:785-1089
               
               
               Cow position:chr15:19735251-19734946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):269, 0

               
               
               Conread position:785-1089
               
               
               Cow position:chr15:21452474-21452778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:785-1089
               
               
               Cow position:chr15:23275027-23274732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:211
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):220, 78

               
               
               Conread position:785-1089
               
               
               Cow position:chr15:51227673-51227975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):81, 183

               
               
               Conread position:785-1109
               
               
               Cow position:chr15:32491340-32491015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):272, 307

               
               
               Conread position:785-1120
               
               
               Cow position:chr15:2927798-2928143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:242
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):72, 15

               
               
               Conread position:786-1028
               
               
               Cow position:chr15:15864800-15865039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:175
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):167, 0

               
               
               Conread position:786-1089
               
               
               Cow position:chr15:21156010-21156319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:217
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):251, 0

               
               
               Conread position:786-1089
               
               
               Cow position:chr15:24043332-24043629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 27

               
               
               Conread position:786-1089
               
               
               Cow position:chr15:25553691-25553995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 83

               
               
               Conread position:787-1137
               
               
               Cow position:chr15:6164541-6164192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):267, 163

               
               
               Conread position:788-1056
               
               
               Cow position:chr15:49448606-49448337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):144, 66

               
               
               Conread position:788-1089
               
               
               Cow position:chr15:39446749-39446448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):254, 35

               
               
               Conread position:793-1106
               
               
               Cow position:chr15:26932598-26932912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 70

               
               
               Conread position:795-1089
               
               
               Cow position:chr15:11627962-11628255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):221, 29

               
               
               Conread position:796-1084
               
               
               Cow position:chr15:6081260-6081550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:217
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):66, 27

               
               
               Conread position:796-1089
               
               
               Cow position:chr15:42729472-42729765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):14, 19

               
               
               Conread position:796-1109
               
               
               Cow position:chr15:11575449-11575138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 61

               
               
               Conread position:797-1094
               
               
               Cow position:chr15:6493484-6493781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:797-1118
               
               
               Cow position:chr15:4688592-4688915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):257, 291

               
               
               Conread position:799-1108
               
               
               Cow position:chr15:4952889-4953199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):259, 0

               
               
               Conread position:802-963
               
               
               Cow position:chr15:30984398-30984231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:802-1075
               
               
               Cow position:chr15:50870026-50870295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:183
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):208, 55

               
               
               Conread position:802-1077
               
               
               Cow position:chr15:334978-335253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 66

               
               
               Conread position:802-1077
               
               
               Cow position:chr15:20429804-20430070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:187
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):109, 55

               
               
               Conread position:802-1081
               
               
               Cow position:chr15:7553176-7553452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):114, 72

               
               
               Conread position:802-1083
               
               
               Cow position:chr15:22712300-22712576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):162, 83

               
               
               Conread position:802-1084
               
               
               Cow position:chr15:44039-44320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):61, 27

               
               
               Conread position:802-1087
               
               
               Cow position:chr15:37631584-37631857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):256, 11

               
               
               Conread position:802-1089
               
               
               Cow position:chr15:1759515-1759224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:199
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):74, 109

               
               
               Conread position:802-1089
               
               
               Cow position:chr15:2670719-2670437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:207
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):34, 132

               
               
               Conread position:802-1089
               
               
               Cow position:chr15:3008269-3007985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):252, 64

               
               
               Conread position:802-1089
               
               
               Cow position:chr15:4654034-4654321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 180

               
               
               Conread position:802-1089
               
               
               Cow position:chr15:6119952-6120230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):252, 145

               
               
               Conread position:802-1089
               
               
               Cow position:chr15:12365965-12366248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):251, 76

               
               
               Conread position:802-1089
               
               
               Cow position:chr15:20413140-20413428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):255, 0

               
               
               Conread position:802-1089
               
               
               Cow position:chr15:22760424-22760151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):252, 188

               
               
               Conread position:802-1089
               
               
               Cow position:chr15:44666646-44666358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 130

               
               
               Conread position:802-1093
               
               
               Cow position:chr15:4626852-4626563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):242, 55

               
               
               Conread position:802-1112
               
               
               Cow position:chr15:10477557-10477249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):252, 146

               
               
               Conread position:803-1089
               
               
               Cow position:chr15:2795761-2796048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):251, 0

               
               
               Conread position:803-1089
               
               
               Cow position:chr15:35404543-35404828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):251, 68

               
               
               Conread position:803-1108
               
               
               Cow position:chr15:44298292-44297991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:213
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):150, 107

               
               
               Conread position:803-1123
               
               
               Cow position:chr15:36623094-36622775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):138, 166

               
               
               Conread position:804-998
               
               
               Cow position:chr15:7952692-7952888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:804-1083
               
               
               Cow position:chr15:17123172-17123451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:197
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):209, 71

               
               
               Conread position:804-1089
               
               
               Cow position:chr15:6658548-6658262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):238, 110

               
               
               Conread position:804-1089
               
               
               Cow position:chr15:32702162-32701878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):250, 91

               
               
               Conread position:805-1025
               
               
               Cow position:chr15:34130877-34130662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:805-1076
               
               
               Cow position:chr15:22154208-22154479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:184
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):239, 79

               
               
               Conread position:806-1084
               
               
               Cow position:chr15:3721563-3721285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):248, 212

               
               
               Conread position:806-1089
               
               
               Cow position:chr15:25122366-25122082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):233, 170

               
               
               Conread position:807-1002
               
               
               Cow position:chr15:29003475-29003661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:807-1075
               
               
               Cow position:chr15:7932210-7932469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:192
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):211, 0

               
               
               Conread position:807-1076
               
               
               Cow position:chr15:26564278-26564022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:182
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):109, 35

               
               
               Conread position:813-1029
               
               
               Cow position:chr15:42726790-42727005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):150, 0

               
               
               Conread position:813-1083
               
               
               Cow position:chr15:7547446-7547715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):244, 119

               
               
               Conread position:813-1124
               
               
               Cow position:chr15:32697326-32697632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):149, 44

               
               
               Conread position:814-1083
               
               
               Cow position:chr15:33305210-33304939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:202
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):49, 156

               
               
               Conread position:814-1089
               
               
               Cow position:chr15:4730068-4730336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):239, 69

               
               
               Conread position:814-1089
               
               
               Cow position:chr15:6330711-6330974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:202
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:814-1089
               
               
               Cow position:chr15:17681700-17681433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):240, 71

               
               
               Conread position:814-1089
               
               
               Cow position:chr15:41786133-41785855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):138, 216

               
               
               Conread position:814-1089
               
               
               Cow position:chr15:45244171-45244452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:205
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):203, 258

               
               
               Conread position:814-1124
               
               
               Cow position:chr15:30611755-30612066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:204
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):33, 95

               
               
               Conread position:816-1089
               
               
               Cow position:chr15:33700087-33700358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):29, 200

               
               
               Conread position:817-1089
               
               
               Cow position:chr15:32646940-32647213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):237, 0

               
               
               Conread position:817-1124
               
               
               Cow position:chr15:11787818-11788130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):193, 13

               
               
               Conread position:818-1089
               
               
               Cow position:chr15:4104180-4103911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):215, 131

               
               
               Conread position:819-1002
               
               
               Cow position:chr15:43293793-43293970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:132
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:819-1108
               
               
               Cow position:chr15:37394312-37394599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):260, 70

               
               
               Conread position:820-1093
               
               
               Cow position:chr15:16788048-16787772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:202
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):129, 201

               
               
               Conread position:822-1030
               
               
               Cow position:chr15:41147356-41147564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:141
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):138, 78

               
               
               Conread position:822-1084
               
               
               Cow position:chr15:12439332-12439595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:189
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):235, 0

               
               
               Conread position:823-1089
               
               
               Cow position:chr15:36356478-36356216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):230, 93

               
               
               Conread position:824-1108
               
               
               Cow position:chr15:4673920-4674205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):232, 268

               
               
               Conread position:826-1082
               
               
               Cow position:chr15:37373535-37373278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):231, 0

               
               
               Conread position:826-1089
               
               
               Cow position:chr15:7985841-7985574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):187, 0

               
               
               Conread position:832-1055
               
               
               Cow position:chr15:28559038-28559261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):89, 72

               
               
               Conread position:832-1087
               
               
               Cow position:chr15:2019884-2020137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:191
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):183, 78

               
               
               Conread position:833-1089
               
               
               Cow position:chr15:27747924-27747667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):224, 0

               
               
               Conread position:835-1112
               
               
               Cow position:chr15:21911710-21911435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 60

               
               
               Conread position:841-1067
               
               
               Cow position:chr15:17237280-17237057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:841-1077
               
               
               Cow position:chr15:12442138-12442366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:174
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):213, 54

               
               
               Conread position:843-1083
               
               
               Cow position:chr15:19257134-19256898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):150, 50

               
               
               Conread position:844-1016
               
               
               Cow position:chr15:10569298-10569470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:844-1089
               
               
               Cow position:chr15:40344643-40344395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:174
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):159, 231

               
               
               Conread position:845-1089
               
               
               Cow position:chr15:53341608-53341847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:850-1089
               
               
               Cow position:chr15:461608-461848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:185
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):204, 0

               
               
               Conread position:850-1090
               
               
               Cow position:chr15:3777900-3778141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):57, 64

               
               
               Conread position:851-1003
               
               
               Cow position:chr15:15738676-15738828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:852-1084
               
               
               Cow position:chr15:24047883-24048116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:170
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):202, 0

               
               
               Conread position:853-1089
               
               
               Cow position:chr15:34063567-34063809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:183
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):177, 0

               
               
               Conread position:854-1108
               
               
               Cow position:chr15:609501-609247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):201, 127

               
               
               Conread position:857-1085
               
               
               Cow position:chr15:28151854-28151625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):16, 107

               
               
               Conread position:857-1089
               
               
               Cow position:chr15:7577786-7578019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):200, 0

               
               
               Conread position:857-1122
               
               
               Cow position:chr15:4213789-4214057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:195
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):197, 235

               
               
               Conread position:859-1108
               
               
               Cow position:chr15:50345106-50344858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):195, 15

               
               
               Conread position:860-1089
               
               
               Cow position:chr15:49242693-49242463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):194, 0

               
               
               Conread position:860-1118
               
               
               Cow position:chr15:6043248-6043507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):194, 206

               
               
               Conread position:861-1089
               
               
               Cow position:chr15:5196979-5197203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:173
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):196, 49

               
               
               Conread position:862-1066
               
               
               Cow position:chr15:17398320-17398525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):192, 0

               
               
               Conread position:872-1083
               
               
               Cow position:chr15:33260572-33260361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:145
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):22, 49

               
               
               Conread position:872-1089
               
               
               Cow position:chr15:46105862-46106079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):161, 171

               
               
               Conread position:874-1084
               
               
               Cow position:chr15:16514831-16515040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:152
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):184, 0

               
               
               Conread position:874-1095
               
               
               Cow position:chr15:28235636-28235856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):111, 9

               
               
               Conread position:874-1108
               
               
               Cow position:chr15:26597792-26597554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):129, 177

               
               
               Conread position:875-1074
               
               
               Cow position:chr15:1669740-1669940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):105, 70

               
               
               Conread position:878-1089
               
               
               Cow position:chr15:2079972-2080184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):179, 0

               
               
               Conread position:879-1089
               
               
               Cow position:chr15:45113256-45113044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):106, 84

               
               
               Conread position:880-1108
               
               
               Cow position:chr15:20457970-20458198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:172
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):174, 125

               
               
               Conread position:881-1056
               
               
               Cow position:chr15:364346-364170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):130, 112

               
               
               Conread position:881-1089
               
               
               Cow position:chr15:4727815-4728017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):14, 82

               
               
               Conread position:881-1106
               
               
               Cow position:chr15:33455055-33455276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:165
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):180, 165

               
               
               Conread position:887-1089
               
               
               Cow position:chr15:7848150-7847947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:157
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):167, 0

               
               
               Conread position:892-1089
               
               
               Cow position:chr15:14718478-14718673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):146, 140

               
               
               Conread position:892-1089
               
               
               Cow position:chr15:28240742-28240940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):162, 0

               
               
               Conread position:896-1083
               
               
               Cow position:chr15:1298994-1298806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:143
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):158, 0

               
               
               Conread position:896-1083
               
               
               Cow position:chr15:32065633-32065440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:896-1089
               
               
               Cow position:chr15:20173328-20173136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):158, 118

               
               
               Conread position:899-1084
               
               
               Cow position:chr15:29898998-29899187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:143
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:900-1108
               
               
               Cow position:chr15:21840930-21841138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):154, 43

               
               
               Conread position:901-1051
               
               
               Cow position:chr15:4122573-4122423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:911-1099
               
               
               Cow position:chr15:26157675-26157874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):52, 12

               
               
               Conread position:914-1056
               
               
               Cow position:chr15:30984057-30983921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:110
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:914-1106
               
               
               Cow position:chr15:35738687-35738880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:133
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):140, 0

               
               
               Conread position:920-1088
               
               
               Cow position:chr15:52464560-52464396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):36, 52

               
               
               Conread position:920-1094
               
               
               Cow position:chr15:42419263-42419088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):133, 0

               
               
               Conread position:921-1089
               
               
               Cow position:chr15:662243-662073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:922-1089
               
               
               Cow position:chr15:25909920-25909753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:137
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:922-1089
               
               
               Cow position:chr15:36423928-36423760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):132, 0

               
               
               Conread position:923-1089
               
               
               Cow position:chr15:5913892-5913725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:117
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):131, 0

               
               
               Conread position:925-1089
               
               
               Cow position:chr15:9910413-9910248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):129, 0

               
               
               Conread position:927-1108
               
               
               Cow position:chr15:13076209-13076392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:928-1089
               
               
               Cow position:chr15:18214264-18214423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:120
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):126, 34

               
               
               Conread position:928-1089
               
               
               Cow position:chr15:26079769-26079607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:130
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:928-1089
               
               
               Cow position:chr15:50308774-50308612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:928-1108
               
               
               Cow position:chr15:16784017-16784198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:934-1089
               
               
               Cow position:chr15:6152946-6152791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):123, 80

               
               
               Conread position:936-1089
               
               
               Cow position:chr15:48556419-48556572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:121
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):121, 94

               
               
               Conread position:937-1089
               
               
               Cow position:chr15:44364656-44364501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:117
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:952-1089
               
               
               Cow position:chr15:2560134-2560272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:107
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:954-1108
               
               
               Cow position:chr15:44378240-44378393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):101, 18

               
               
               Conread position:961-1089
               
               
               Cow position:chr15:31357874-31357745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:964-1077
               
               
               Cow position:chr15:21940296-21940182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:93
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:970-1077
               
               
               Cow position:chr15:3792810-3792918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:109
               
               
               Alignm identity:89
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:972-1089
               
               
               Cow position:chr15:6758742-6758624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:94
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:972-1108
               
               
               Cow position:chr15:24969213-24969075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):82, 121

               
               
               Conread position:778-1089
               
               
               Cow position:chr16:14100047-14100357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):280, 79

               
               
               Conread position:778-1110
               
               
               Cow position:chr16:6620430-6620102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):143, 42

               
               
               Conread position:781-1077
               
               
               Cow position:chr16:3332108-3332400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:206
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):273, 98

               
               
               Conread position:782-977
               
               
               Cow position:chr16:7083846-7084042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:782-993
               
               
               Cow position:chr16:16960668-16960457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):188, 178

               
               
               Conread position:782-1000
               
               
               Cow position:chr16:14090267-14090047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):139, 122

               
               
               Conread position:782-1003
               
               
               Cow position:chr16:23465245-23465466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:160
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):17, 22

               
               
               Conread position:782-1033
               
               
               Cow position:chr16:37532984-37533229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:178
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):248, 32

               
               
               Conread position:782-1083
               
               
               Cow position:chr16:30052146-30052448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):266, 273

               
               
               Conread position:782-1089
               
               
               Cow position:chr16:11054193-11054496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:210
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):218, 105

               
               
               Conread position:782-1089
               
               
               Cow position:chr16:15538643-15538945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:205
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):229, 32

               
               
               Conread position:782-1089
               
               
               Cow position:chr16:28194103-28193795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):272, 0

               
               
               Conread position:782-1089
               
               
               Cow position:chr16:47403581-47403887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):272, 119

               
               
               Conread position:782-1089
               
               
               Cow position:chr16:54479404-54479711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):272, 5

               
               
               Conread position:782-1106
               
               
               Cow position:chr16:46529125-46528804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):28, 33

               
               
               Conread position:782-1108
               
               
               Cow position:chr16:51086980-51087308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:783-908
               
               
               Cow position:chr16:1434396-1434520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:783-908
               
               
               Cow position:chr16:36241333-36241458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:101
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-908
               
               
               Cow position:chr16:56861508-56861633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-926
               
               
               Cow position:chr16:42734433-42734289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):138, 0

               
               
               Conread position:783-928
               
               
               Cow position:chr16:46224384-46224240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:107
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:783-937
               
               
               Cow position:chr16:41161260-41161106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:120
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-957
               
               
               Cow position:chr16:20968601-20968427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-965
               
               
               Cow position:chr16:23096966-23096786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):161, 0

               
               
               Conread position:783-965
               
               
               Cow position:chr16:23098539-23098719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):161, 0

               
               
               Conread position:783-989
               
               
               Cow position:chr16:16238622-16238416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-1000
               
               
               Cow position:chr16:46520846-46520623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:783-1001
               
               
               Cow position:chr16:5663987-5664203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:171
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):10, 15

               
               
               Conread position:783-1002
               
               
               Cow position:chr16:37056852-37056635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):27, 32

               
               
               Conread position:783-1003
               
               
               Cow position:chr16:28268655-28268436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:167
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):174, 124

               
               
               Conread position:783-1004
               
               
               Cow position:chr16:55578870-55579083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:160
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:783-1015
               
               
               Cow position:chr16:54175597-54175827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:173
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:783-1016
               
               
               Cow position:chr16:24812146-24812380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:158
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):80, 55

               
               
               Conread position:783-1019
               
               
               Cow position:chr16:44661930-44662158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:783-1026
               
               
               Cow position:chr16:41029604-41029371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:783-1031
               
               
               Cow position:chr16:19170805-19170561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:168
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):148, 63

               
               
               Conread position:783-1033
               
               
               Cow position:chr16:28066255-28066505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-1035
               
               
               Cow position:chr16:4846463-4846214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):36, 18

               
               
               Conread position:783-1035
               
               
               Cow position:chr16:54431772-54432024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-1044
               
               
               Cow position:chr16:29049630-29049891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 18

               
               
               Conread position:783-1050
               
               
               Cow position:chr16:5487968-5488235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 18

               
               
               Conread position:783-1056
               
               
               Cow position:chr16:24621499-24621226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-1060
               
               
               Cow position:chr16:37925775-37925503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:783-1065
               
               
               Cow position:chr16:16032090-16032371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:198
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):271, 47

               
               
               Conread position:783-1067
               
               
               Cow position:chr16:15178887-15179165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 52

               
               
               Conread position:783-1069
               
               
               Cow position:chr16:16267698-16267413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:205
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):162, 114

               
               
               Conread position:783-1070
               
               
               Cow position:chr16:13422721-13422431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):223, 164

               
               
               Conread position:783-1075
               
               
               Cow position:chr16:23364713-23364422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 203

               
               
               Conread position:783-1075
               
               
               Cow position:chr16:42804944-42805220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:214
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):273, 30

               
               
               Conread position:783-1076
               
               
               Cow position:chr16:54286752-54287037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):62, 32

               
               
               Conread position:783-1077
               
               
               Cow position:chr16:236695-236989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 106

               
               
               Conread position:783-1080
               
               
               Cow position:chr16:7466812-7467109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):136, 84

               
               
               Conread position:783-1081
               
               
               Cow position:chr16:53612003-53612301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 213

               
               
               Conread position:783-1083
               
               
               Cow position:chr16:28168120-28167819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1083
               
               
               Cow position:chr16:31586498-31586200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 18

               
               
               Conread position:783-1083
               
               
               Cow position:chr16:53991160-53991453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 46

               
               
               Conread position:783-1084
               
               
               Cow position:chr16:2394568-2394862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:216
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):271, 17

               
               
               Conread position:783-1084
               
               
               Cow position:chr16:2408696-2408394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1084
               
               
               Cow position:chr16:2725024-2724724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 74

               
               
               Conread position:783-1084
               
               
               Cow position:chr16:25262814-25263100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:783-1084
               
               
               Cow position:chr16:25964112-25964411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 179

               
               
               Conread position:783-1084
               
               
               Cow position:chr16:37478662-37478360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):272, 0

               
               
               Conread position:783-1084
               
               
               Cow position:chr16:41515330-41515632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):270, 0

               
               
               Conread position:783-1084
               
               
               Cow position:chr16:49219757-49219449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:227
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):55, 150

               
               
               Conread position:783-1085
               
               
               Cow position:chr16:45816912-45816614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:210
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):90, 111

               
               
               Conread position:783-1087
               
               
               Cow position:chr16:3819563-3819867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-1088
               
               
               Cow position:chr16:11744739-11745045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1088
               
               
               Cow position:chr16:20642685-20642993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 239

               
               
               Conread position:783-1089
               
               
               Cow position:chr16:34698-35005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 18

               
               
               Conread position:783-1089
               
               
               Cow position:chr16:40735-41039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 23

               
               
               Conread position:783-1089
               
               
               Cow position:chr16:43347-43667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:222
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):111, 20

               
               
               Conread position:783-1089
               
               
               Cow position:chr16:417092-417400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr16:658159-658465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 290

               
               
               Conread position:783-1089
               
               
               Cow position:chr16:839482-839786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 155

               
               
               Conread position:783-1089
               
               
               Cow position:chr16:1733940-1734243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 33

               
               
               Conread position:783-1089
               
               
               Cow position:chr16:2233522-2233221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 103

               
               
               Conread position:783-1089
               
               
               Cow position:chr16:2480943-2480644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 49

               
               
               Conread position:783-1089
               
               
               Cow position:chr16:3011037-3011343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 139

               
               
               Conread position:783-1089
               
               
               Cow position:chr16:3148832-3148531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):267, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr16:3769812-3769506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr16:4343704-4343400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 17

               
               
               Conread position:783-1089
               
               
               Cow position:chr16:4426289-4426596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr16:4462113-4461806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr16:4756223-4756530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr16:6945457-6945765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr16:7674262-7673956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 187

               
               
               Conread position:783-1089
               
               
               Cow position:chr16:8813903-8813598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 114

               
               
               Conread position:783-1089
               
               
               Cow position:chr16:9416360-9416073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:203
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr16:10440437-10440744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):133, 124

               
               
               Conread position:783-1089
               
               
               Cow position:chr16:11633645-11633339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 114

               
               
               Conread position:783-1089
               
               
               Cow position:chr16:11640124-11640433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:211
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr16:12161081-12160775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):136, 112

               
               
               Conread position:783-1089
               
               
               Cow position:chr16:12535740-12535443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):250, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr16:12651126-12651433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr16:13539226-13538919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr16:14352482-14352177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 114

               
               
               Conread position:783-1089
               
               
               Cow position:chr16:14440568-14440877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 128

               
               
               Conread position:783-1089
               
               
               Cow position:chr16:14662910-14662603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr16:15187267-15187573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 15

               
               
               Conread position:783-1089
               
               
               Cow position:chr16:15311481-15311788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr16:15410865-15410558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):270, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr16:15494657-15494963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 15

               
               
               Conread position:783-1089
               
               
               Cow position:chr16:15812266-15812573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr16:15980179-15979873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 114

               
               
               Conread position:783-1089
               
               
               Cow position:chr16:16150549-16150243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr16:18694770-18694467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 141

               
               
               Conread position:783-1089
               
               
               Cow position:chr16:18975068-18975373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):270, 15

               
               
               Conread position:783-1089
               
               
               Cow position:chr16:20377660-20377958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):275, 210

               
               
               Conread position:783-1089
               
               
               Cow position:chr16:21017757-21018064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr16:21189456-21189763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr16:23065210-23065508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:214
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):116, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr16:23562643-23562943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:223
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):89, 200

               
               
               Conread position:783-1089
               
               
               Cow position:chr16:23876331-23876035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):177, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr16:24210199-24209893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 177

               
               
               Conread position:783-1089
               
               
               Cow position:chr16:24407108-24407415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr16:24988519-24988212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr16:25087807-25088114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 20

               
               
               Conread position:783-1089
               
               
               Cow position:chr16:25260323-25260629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 143

               
               
               Conread position:783-1089
               
               
               Cow position:chr16:25444076-25444382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 18

               
               
               Conread position:783-1089
               
               
               Cow position:chr16:25455263-25454955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 18

               
               
               Conread position:783-1089
               
               
               Cow position:chr16:25955379-25955079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:206
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):59, 151

               
               
               Conread position:783-1089
               
               
               Cow position:chr16:26316909-26317216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr16:26388967-26388660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr16:26653867-26654168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):57, 125

               
               
               Conread position:783-1089
               
               
               Cow position:chr16:26665902-26666209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr16:26990741-26990435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 51

               
               
               Conread position:783-1089
               
               
               Cow position:chr16:27010377-27010684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:207
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):57, 30

               
               
               Conread position:783-1089
               
               
               Cow position:chr16:27593624-27593317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr16:27731183-27730876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr16:28206913-28206606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr16:37146175-37146482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr16:37487059-37486752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr16:40293972-40293665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr16:41164573-41164266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr16:42210694-42211001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr16:43563194-43562890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 58

               
               
               Conread position:783-1089
               
               
               Cow position:chr16:43770949-43770646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 116

               
               
               Conread position:783-1089
               
               
               Cow position:chr16:43895064-43894757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):228, 222

               
               
               Conread position:783-1089
               
               
               Cow position:chr16:46102418-46102112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):272, 180

               
               
               Conread position:783-1089
               
               
               Cow position:chr16:47772460-47772765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):263, 134

               
               
               Conread position:783-1089
               
               
               Cow position:chr16:49231082-49230781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr16:49529604-49529909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):213, 25

               
               
               Conread position:783-1089
               
               
               Cow position:chr16:52524497-52524799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):13, 21

               
               
               Conread position:783-1089
               
               
               Cow position:chr16:52526430-52526738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr16:54180155-54179859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 88

               
               
               Conread position:783-1089
               
               
               Cow position:chr16:56914035-56913729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 159

               
               
               Conread position:783-1090
               
               
               Cow position:chr16:8591610-8591917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):79, 136

               
               
               Conread position:783-1090
               
               
               Cow position:chr16:46554620-46554928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1092
               
               
               Cow position:chr16:34505898-34506208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1094
               
               
               Cow position:chr16:17141606-17141917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 62

               
               
               Conread position:783-1094
               
               
               Cow position:chr16:45704590-45704284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:783-1107
               
               
               Cow position:chr16:29036092-29036400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):160, 103

               
               
               Conread position:783-1108
               
               
               Cow position:chr16:7154800-7155128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):250, 74

               
               
               Conread position:783-1108
               
               
               Cow position:chr16:11006988-11006660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):148, 318

               
               
               Conread position:783-1108
               
               
               Cow position:chr16:41033499-41033823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):270, 177

               
               
               Conread position:783-1108
               
               
               Cow position:chr16:41684105-41683780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 125

               
               
               Conread position:783-1108
               
               
               Cow position:chr16:44127641-44127332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):10, 128

               
               
               Conread position:783-1108
               
               
               Cow position:chr16:49254040-49253719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 197

               
               
               Conread position:783-1113
               
               
               Cow position:chr16:5525907-5525578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 310

               
               
               Conread position:783-1118
               
               
               Cow position:chr16:193737-193400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):173, 31

               
               
               Conread position:783-1118
               
               
               Cow position:chr16:19887225-19887556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):275, 61

               
               
               Conread position:783-1121
               
               
               Cow position:chr16:4973324-4972988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 146

               
               
               Conread position:783-1124
               
               
               Cow position:chr16:15569968-15570309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 41

               
               
               Conread position:783-1125
               
               
               Cow position:chr16:17111450-17111791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 305

               
               
               Conread position:784-908
               
               
               Cow position:chr16:1565477-1565353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:102
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:784-913
               
               
               Cow position:chr16:7199356-7199226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:99
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:784-1082
               
               
               Cow position:chr16:42117954-42118245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 124

               
               
               Conread position:784-1089
               
               
               Cow position:chr16:23985511-23985818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):212, 0

               
               
               Conread position:784-1089
               
               
               Cow position:chr16:39475038-39475335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):195, 85

               
               
               Conread position:784-1089
               
               
               Cow position:chr16:42080409-42080109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):270, 70

               
               
               Conread position:784-1089
               
               
               Cow position:chr16:48012460-48012172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:215
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):125, 66

               
               
               Conread position:784-1109
               
               
               Cow position:chr16:48495937-48495611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):270, 291

               
               
               Conread position:785-943
               
               
               Cow position:chr16:6266759-6266601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:785-980
               
               
               Cow position:chr16:9028639-9028827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:136
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:785-1016
               
               
               Cow position:chr16:28022852-28022616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):134, 0

               
               
               Conread position:785-1031
               
               
               Cow position:chr16:25453320-25453080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:785-1032
               
               
               Cow position:chr16:43844756-43844516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:161
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):151, 0

               
               
               Conread position:785-1047
               
               
               Cow position:chr16:25168263-25168529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):177, 0

               
               
               Conread position:785-1082
               
               
               Cow position:chr16:13042443-13042741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):52, 116

               
               
               Conread position:785-1083
               
               
               Cow position:chr16:51040755-51041049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 101

               
               
               Conread position:785-1089
               
               
               Cow position:chr16:8872230-8871924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:230
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):74, 156

               
               
               Conread position:785-1089
               
               
               Cow position:chr16:19081252-19081557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):269, 0

               
               
               Conread position:785-1089
               
               
               Cow position:chr16:19798486-19798180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):221, 48

               
               
               Conread position:785-1089
               
               
               Cow position:chr16:34532494-34532799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):269, 0

               
               
               Conread position:785-1089
               
               
               Cow position:chr16:37443327-37443031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:213
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):136, 86

               
               
               Conread position:785-1089
               
               
               Cow position:chr16:44049723-44049418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):229, 162

               
               
               Conread position:785-1089
               
               
               Cow position:chr16:44189687-44189383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:203
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):232, 60

               
               
               Conread position:785-1089
               
               
               Cow position:chr16:45550349-45550650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):268, 12

               
               
               Conread position:785-1092
               
               
               Cow position:chr16:39615439-39615732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):269, 65

               
               
               Conread position:785-1108
               
               
               Cow position:chr16:7009256-7009572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):269, 153

               
               
               Conread position:786-1087
               
               
               Cow position:chr16:45755410-45755110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 134

               
               
               Conread position:786-1096
               
               
               Cow position:chr16:31425255-31425563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):267, 186

               
               
               Conread position:791-1087
               
               
               Cow position:chr16:24146236-24146515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:793-1083
               
               
               Cow position:chr16:36792741-36793020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):265, 48

               
               
               Conread position:796-1077
               
               
               Cow position:chr16:42742325-42742053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):8, 15

               
               
               Conread position:796-1108
               
               
               Cow position:chr16:20204212-20204528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:797-1032
               
               
               Cow position:chr16:29685663-29685437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):124, 19

               
               
               Conread position:797-1074
               
               
               Cow position:chr16:28473711-28473444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:187
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):124, 65

               
               
               Conread position:798-1118
               
               
               Cow position:chr16:5894656-5894979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):247, 13

               
               
               Conread position:801-1089
               
               
               Cow position:chr16:819186-819453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:217
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):17, 110

               
               
               Conread position:802-1004
               
               
               Cow position:chr16:7648189-7648391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):162, 69

               
               
               Conread position:802-1067
               
               
               Cow position:chr16:43744361-43744106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):252, 62

               
               
               Conread position:802-1084
               
               
               Cow position:chr16:10860100-10859827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):256, 42

               
               
               Conread position:802-1084
               
               
               Cow position:chr16:10966017-10965746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:194
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:802-1089
               
               
               Cow position:chr16:25344195-25344483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):255, 0

               
               
               Conread position:802-1089
               
               
               Cow position:chr16:45608632-45608920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):252, 0

               
               
               Conread position:803-1031
               
               
               Cow position:chr16:55150573-55150796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):49, 62

               
               
               Conread position:803-1084
               
               
               Cow position:chr16:41036806-41036526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:200
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):205, 68

               
               
               Conread position:804-1089
               
               
               Cow position:chr16:13602413-13602132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):250, 53

               
               
               Conread position:805-1089
               
               
               Cow position:chr16:13435281-13435559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):248, 125

               
               
               Conread position:805-1089
               
               
               Cow position:chr16:35273079-35273362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):105, 9

               
               
               Conread position:805-1093
               
               
               Cow position:chr16:23672773-23673062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:206
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):63, 157

               
               
               Conread position:806-1089
               
               
               Cow position:chr16:20634993-20634712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 56

               
               
               Conread position:806-1089
               
               
               Cow position:chr16:23533776-23533494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):251, 163

               
               
               Conread position:807-1082
               
               
               Cow position:chr16:55911564-55911288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):7, 51

               
               
               Conread position:811-1127
               
               
               Cow position:chr16:15549078-15549393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:215
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):128, 159

               
               
               Conread position:812-1084
               
               
               Cow position:chr16:19722186-19722455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:193
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):221, 59

               
               
               Conread position:813-999
               
               
               Cow position:chr16:25936990-25937175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:813-1089
               
               
               Cow position:chr16:42074664-42074394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):241, 114

               
               
               Conread position:814-1076
               
               
               Cow position:chr16:10569087-10569334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):256, 93

               
               
               Conread position:814-1092
               
               
               Cow position:chr16:30696322-30696049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):59, 27

               
               
               Conread position:817-1089
               
               
               Cow position:chr16:16539649-16539914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):237, 17

               
               
               Conread position:817-1089
               
               
               Cow position:chr16:41823042-41823307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):220, 37

               
               
               Conread position:817-1106
               
               
               Cow position:chr16:11309594-11309870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):104, 23

               
               
               Conread position:818-1089
               
               
               Cow position:chr16:27105593-27105861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:195
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):234, 187

               
               
               Conread position:818-1089
               
               
               Cow position:chr16:53226086-53225815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):12, 143

               
               
               Conread position:818-1130
               
               
               Cow position:chr16:42863338-42863038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):240, 36

               
               
               Conread position:819-1084
               
               
               Cow position:chr16:45655354-45655092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):239, 38

               
               
               Conread position:820-977
               
               
               Cow position:chr16:48482564-48482414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:820-1089
               
               
               Cow position:chr16:9024960-9025221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:820-1089
               
               
               Cow position:chr16:24241165-24240895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 112

               
               
               Conread position:820-1089
               
               
               Cow position:chr16:39756778-39757042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):234, 90

               
               
               Conread position:822-1003
               
               
               Cow position:chr16:7298654-7298829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):100, 88

               
               
               Conread position:827-1089
               
               
               Cow position:chr16:28468881-28468618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):230, 0

               
               
               Conread position:828-1124
               
               
               Cow position:chr16:16095455-16095741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:205
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):34, 60

               
               
               Conread position:829-1001
               
               
               Cow position:chr16:2304332-2304509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:131
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):42, 153

               
               
               Conread position:829-1076
               
               
               Cow position:chr16:47367242-47367490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:180
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):210, 103

               
               
               Conread position:830-1089
               
               
               Cow position:chr16:10373189-10372929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):224, 0

               
               
               Conread position:832-1004
               
               
               Cow position:chr16:12733556-12733384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:832-1089
               
               
               Cow position:chr16:49170721-49170479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):30, 75

               
               
               Conread position:833-1108
               
               
               Cow position:chr16:14569942-14569673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:195
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):83, 24

               
               
               Conread position:834-1084
               
               
               Cow position:chr16:24925304-24925551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):220, 58

               
               
               Conread position:834-1089
               
               
               Cow position:chr16:19671987-19671730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):37, 129

               
               
               Conread position:838-1050
               
               
               Cow position:chr16:23249716-23249504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:838-1108
               
               
               Cow position:chr16:41624421-41624156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:192
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):216, 33

               
               
               Conread position:838-1108
               
               
               Cow position:chr16:50713184-50712915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:194
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):216, 15

               
               
               Conread position:839-1089
               
               
               Cow position:chr16:6676974-6677226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):167, 0

               
               
               Conread position:840-1089
               
               
               Cow position:chr16:15349893-15349642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:842-1034
               
               
               Cow position:chr16:39416583-39416392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:844-1089
               
               
               Cow position:chr16:9431811-9431565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):210, 0

               
               
               Conread position:844-1089
               
               
               Cow position:chr16:37053297-37053543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):210, 0

               
               
               Conread position:847-1089
               
               
               Cow position:chr16:340044-340287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):188, 181

               
               
               Conread position:851-1108
               
               
               Cow position:chr16:4398515-4398781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:192
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):185, 0

               
               
               Conread position:852-1090
               
               
               Cow position:chr16:27710931-27710695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:185
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 15

               
               
               Conread position:853-1112
               
               
               Cow position:chr16:25173509-25173774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 252

               
               
               Conread position:856-1060
               
               
               Cow position:chr16:34482429-34482630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:856-1074
               
               
               Cow position:chr16:20201346-20201565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):180, 116

               
               
               Conread position:856-1089
               
               
               Cow position:chr16:43647052-43647286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):65, 51

               
               
               Conread position:857-1089
               
               
               Cow position:chr16:10812335-10812568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:184
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):197, 0

               
               
               Conread position:858-1085
               
               
               Cow position:chr16:5655534-5655761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):150, 102

               
               
               Conread position:858-1108
               
               
               Cow position:chr16:37455204-37454957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):179, 0

               
               
               Conread position:861-1121
               
               
               Cow position:chr16:5844195-5844471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:864-1118
               
               
               Cow position:chr16:12244762-12244507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):190, 0

               
               
               Conread position:865-1089
               
               
               Cow position:chr16:712640-712865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):189, 0

               
               
               Conread position:871-1089
               
               
               Cow position:chr16:13777197-13777413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):48, 39

               
               
               Conread position:872-1089
               
               
               Cow position:chr16:42746141-42745934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:872-1089
               
               
               Cow position:chr16:50874554-50874336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:169
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):16, 66

               
               
               Conread position:874-1016
               
               
               Cow position:chr16:6733811-6733954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:874-1070
               
               
               Cow position:chr16:26672254-26672059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):180, 42

               
               
               Conread position:874-1087
               
               
               Cow position:chr16:16993467-16993677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):95, 37

               
               
               Conread position:874-1089
               
               
               Cow position:chr16:16231074-16231290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):179, 0

               
               
               Conread position:874-1089
               
               
               Cow position:chr16:20278129-20278345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:164
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):180, 0

               
               
               Conread position:874-1106
               
               
               Cow position:chr16:45559583-45559828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):132, 0

               
               
               Conread position:875-1089
               
               
               Cow position:chr16:37446409-37446193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:876-1089
               
               
               Cow position:chr16:3349305-3349515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):18, 181

               
               
               Conread position:876-1112
               
               
               Cow position:chr16:9225900-9226135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):181, 72

               
               
               Conread position:877-1089
               
               
               Cow position:chr16:40878884-40879097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:165
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):177, 0

               
               
               Conread position:879-1089
               
               
               Cow position:chr16:5435119-5435330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:161
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):178, 0

               
               
               Conread position:880-1089
               
               
               Cow position:chr16:22799409-22799199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:153
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):178, 0

               
               
               Conread position:880-1089
               
               
               Cow position:chr16:26627048-26627257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):174, 9

               
               
               Conread position:880-1089
               
               
               Cow position:chr16:37058714-37058504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:152
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):173, 0

               
               
               Conread position:884-1089
               
               
               Cow position:chr16:28696875-28696670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):34, 27

               
               
               Conread position:885-1074
               
               
               Cow position:chr16:5416967-5416778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:157
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):169, 102

               
               
               Conread position:885-1113
               
               
               Cow position:chr16:15256170-15255940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):131, 216

               
               
               Conread position:885-1122
               
               
               Cow position:chr16:43988129-43987900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:177
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):11, 60

               
               
               Conread position:886-1108
               
               
               Cow position:chr16:48410935-48411159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:887-1089
               
               
               Cow position:chr16:7303058-7303261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:157
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):167, 0

               
               
               Conread position:887-1089
               
               
               Cow position:chr16:18651280-18651077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):167, 0

               
               
               Conread position:892-1089
               
               
               Cow position:chr16:7022207-7022405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:893-1087
               
               
               Cow position:chr16:45465609-45465414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):161, 0

               
               
               Conread position:894-1084
               
               
               Cow position:chr16:599738-599925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):119, 13

               
               
               Conread position:895-1089
               
               
               Cow position:chr16:37671185-37670992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:157
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):161, 75

               
               
               Conread position:898-1108
               
               
               Cow position:chr16:52856529-52856311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:150
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:899-1089
               
               
               Cow position:chr16:24615751-24615560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):155, 0

               
               
               Conread position:914-1089
               
               
               Cow position:chr16:15904875-15904699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):140, 0

               
               
               Conread position:914-1089
               
               
               Cow position:chr16:41575583-41575759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):140, 0

               
               
               Conread position:916-1062
               
               
               Cow position:chr16:5833111-5833256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:920-1084
               
               
               Cow position:chr16:15804641-15804805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):134, 146

               
               
               Conread position:920-1089
               
               
               Cow position:chr16:32326199-32326369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):134, 0

               
               
               Conread position:923-1084
               
               
               Cow position:chr16:8482280-8482120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):131, 45

               
               
               Conread position:923-1107
               
               
               Cow position:chr16:25158055-25157871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):131, 102

               
               
               Conread position:927-1089
               
               
               Cow position:chr16:12485958-12485795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):127, 0

               
               
               Conread position:928-1077
               
               
               Cow position:chr16:36246820-36246966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):126, 56

               
               
               Conread position:928-1087
               
               
               Cow position:chr16:44256780-44256623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:928-1089
               
               
               Cow position:chr16:1564042-1563883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):129, 15

               
               
               Conread position:934-1089
               
               
               Cow position:chr16:25074942-25075098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:123
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:935-1089
               
               
               Cow position:chr16:6264627-6264472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:936-1091
               
               
               Cow position:chr16:44147604-44147759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:943-1089
               
               
               Cow position:chr16:13722231-13722084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):53, 15

               
               
               Conread position:946-1089
               
               
               Cow position:chr16:26500024-26500168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:108
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):16, 24

               
               
               Conread position:947-1087
               
               
               Cow position:chr16:28433712-28433570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:108
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:953-1089
               
               
               Cow position:chr16:14039794-14039930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:106
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):101, 113

               
               
               Conread position:969-1089
               
               
               Cow position:chr16:25879700-25879821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:95
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:972-1089
               
               
               Cow position:chr16:6706328-6706210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:96
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:465-1089
               
               
               Cow position:chr17:15127827-15128451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:626
               
               
               Alignm identity:99
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):589, 507

               
               
               Conread position:780-1082
               
               
               Cow position:chr17:25739059-25739354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):277, 219

               
               
               Conread position:780-1089
               
               
               Cow position:chr17:18722123-18721813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:781-1089
               
               
               Cow position:chr17:6122539-6122848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):273, 0

               
               
               Conread position:782-1068
               
               
               Cow position:chr17:20089895-20089626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:214
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):99, 123

               
               
               Conread position:782-1069
               
               
               Cow position:chr17:38828678-38828953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):272, 146

               
               
               Conread position:782-1083
               
               
               Cow position:chr17:31092967-31092677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:200
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):193, 55

               
               
               Conread position:782-1087
               
               
               Cow position:chr17:22249493-22249189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):272, 5

               
               
               Conread position:782-1089
               
               
               Cow position:chr17:15328038-15328346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):275, 0

               
               
               Conread position:782-1089
               
               
               Cow position:chr17:15374169-15374470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:216
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):154, 0

               
               
               Conread position:782-1089
               
               
               Cow position:chr17:24784953-24785255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):276, 62

               
               
               Conread position:782-1089
               
               
               Cow position:chr17:41918947-41919251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:197
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):167, 96

               
               
               Conread position:783-937
               
               
               Cow position:chr17:8211420-8211574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):10, 18

               
               
               Conread position:783-958
               
               
               Cow position:chr17:14214271-14214099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:783-965
               
               
               Cow position:chr17:17087836-17087656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:783-974
               
               
               Cow position:chr17:13920708-13920517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-975
               
               
               Cow position:chr17:9745713-9745901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:783-976
               
               
               Cow position:chr17:32407890-32407701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):127, 0

               
               
               Conread position:783-978
               
               
               Cow position:chr17:5546621-5546426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-994
               
               
               Cow position:chr17:253586-253796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:159
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:783-1002
               
               
               Cow position:chr17:2583043-2583262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:166
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-1013
               
               
               Cow position:chr17:26830146-26829919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):173, 74

               
               
               Conread position:783-1016
               
               
               Cow position:chr17:16897340-16897108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:164
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):16, 22

               
               
               Conread position:783-1018
               
               
               Cow position:chr17:41012291-41012522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:169
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):141, 0

               
               
               Conread position:783-1048
               
               
               Cow position:chr17:18124173-18123912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:783-1055
               
               
               Cow position:chr17:24311596-24311866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):138, 20

               
               
               Conread position:783-1056
               
               
               Cow position:chr17:8994326-8994599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-1060
               
               
               Cow position:chr17:27792015-27791740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 167

               
               
               Conread position:783-1067
               
               
               Cow position:chr17:13674753-13674463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:208
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):158, 27

               
               
               Conread position:783-1069
               
               
               Cow position:chr17:38013-38283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:192
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:783-1069
               
               
               Cow position:chr17:9073908-9074194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-1069
               
               
               Cow position:chr17:15719101-15719387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-1076
               
               
               Cow position:chr17:16870501-16870219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:208
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:783-1076
               
               
               Cow position:chr17:17069678-17069966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):138, 111

               
               
               Conread position:783-1076
               
               
               Cow position:chr17:19406539-19406250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):138, 66

               
               
               Conread position:783-1077
               
               
               Cow position:chr17:14239827-14240122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1077
               
               
               Cow position:chr17:15709235-15708940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1078
               
               
               Cow position:chr17:3780209-3780510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:783-1079
               
               
               Cow position:chr17:2032962-2033252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:783-1081
               
               
               Cow position:chr17:603157-602860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 11

               
               
               Conread position:783-1083
               
               
               Cow position:chr17:1655003-1654703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):263, 74

               
               
               Conread position:783-1083
               
               
               Cow position:chr17:4063099-4063399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 74

               
               
               Conread position:783-1083
               
               
               Cow position:chr17:4084826-4085126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 125

               
               
               Conread position:783-1083
               
               
               Cow position:chr17:13930655-13930957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):160, 0

               
               
               Conread position:783-1083
               
               
               Cow position:chr17:22562904-22563204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 130

               
               
               Conread position:783-1084
               
               
               Cow position:chr17:241048-241362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):138, 105

               
               
               Conread position:783-1084
               
               
               Cow position:chr17:1457623-1457324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 127

               
               
               Conread position:783-1084
               
               
               Cow position:chr17:4210687-4210989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 104

               
               
               Conread position:783-1084
               
               
               Cow position:chr17:12133244-12132945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):163, 73

               
               
               Conread position:783-1084
               
               
               Cow position:chr17:20085054-20084753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):158, 276

               
               
               Conread position:783-1087
               
               
               Cow position:chr17:4481125-4480819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:783-1088
               
               
               Cow position:chr17:10270589-10270288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 106

               
               
               Conread position:783-1089
               
               
               Cow position:chr17:138371-138673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):136, 141

               
               
               Conread position:783-1089
               
               
               Cow position:chr17:147679-147987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 20

               
               
               Conread position:783-1089
               
               
               Cow position:chr17:183905-184212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr17:452612-452917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):272, 88

               
               
               Conread position:783-1089
               
               
               Cow position:chr17:731729-731426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 74

               
               
               Conread position:783-1089
               
               
               Cow position:chr17:1312004-1311697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):269, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr17:1969909-1970216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr17:2245298-2245000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr17:2264952-2265254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 13

               
               
               Conread position:783-1089
               
               
               Cow position:chr17:5043830-5043528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 140

               
               
               Conread position:783-1089
               
               
               Cow position:chr17:6071293-6071600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):136, 146

               
               
               Conread position:783-1089
               
               
               Cow position:chr17:6262615-6262921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 131

               
               
               Conread position:783-1089
               
               
               Cow position:chr17:8204694-8205011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:229
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):78, 163

               
               
               Conread position:783-1089
               
               
               Cow position:chr17:8222453-8222770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr17:11785642-11785949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr17:14029587-14029281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 259

               
               
               Conread position:783-1089
               
               
               Cow position:chr17:14242592-14242894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 71

               
               
               Conread position:783-1089
               
               
               Cow position:chr17:14899481-14899787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):267, 203

               
               
               Conread position:783-1089
               
               
               Cow position:chr17:15117575-15117882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):275, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr17:15140580-15140274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 198

               
               
               Conread position:783-1089
               
               
               Cow position:chr17:15438562-15438856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 74

               
               
               Conread position:783-1089
               
               
               Cow position:chr17:15808745-15809052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):273, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr17:15853488-15853799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):169, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr17:17133103-17133409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):254, 189

               
               
               Conread position:783-1089
               
               
               Cow position:chr17:18100317-18100009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):136, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr17:19215636-19215330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 249

               
               
               Conread position:783-1089
               
               
               Cow position:chr17:20390532-20390839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):270, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr17:20545896-20546202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 56

               
               
               Conread position:783-1089
               
               
               Cow position:chr17:20642472-20642779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:214
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):231, 221

               
               
               Conread position:783-1089
               
               
               Cow position:chr17:20694959-20695272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):157, 184

               
               
               Conread position:783-1089
               
               
               Cow position:chr17:21066909-21066605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:214
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):252, 107

               
               
               Conread position:783-1089
               
               
               Cow position:chr17:22774683-22774370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 37

               
               
               Conread position:783-1089
               
               
               Cow position:chr17:23321664-23321351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr17:24027225-24026918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr17:27977879-27978176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 110

               
               
               Conread position:783-1089
               
               
               Cow position:chr17:29825203-29824896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr17:29949976-29950280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):252, 51

               
               
               Conread position:783-1089
               
               
               Cow position:chr17:30182823-30182515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr17:40810508-40810816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 0

               
               
               Conread position:783-1090
               
               
               Cow position:chr17:22233532-22233219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):31, 221

               
               
               Conread position:783-1094
               
               
               Cow position:chr17:20214860-20215161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 54

               
               
               Conread position:783-1096
               
               
               Cow position:chr17:20094398-20094085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):272, 186

               
               
               Conread position:783-1107
               
               
               Cow position:chr17:1784784-1784458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 247

               
               
               Conread position:783-1108
               
               
               Cow position:chr17:1708971-1708645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 109

               
               
               Conread position:783-1108
               
               
               Cow position:chr17:1712139-1711813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 109

               
               
               Conread position:783-1108
               
               
               Cow position:chr17:15307618-15307309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:227
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):271, 177

               
               
               Conread position:783-1108
               
               
               Cow position:chr17:30412729-30413049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):15, 21

               
               
               Conread position:783-1121
               
               
               Cow position:chr17:22106877-22106538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 309

               
               
               Conread position:783-1125
               
               
               Cow position:chr17:1569458-1569114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):189, 340

               
               
               Conread position:784-908
               
               
               Cow position:chr17:3305138-3305260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:98
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:784-1083
               
               
               Cow position:chr17:34567560-34567851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:194
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):189, 122

               
               
               Conread position:784-1087
               
               
               Cow position:chr17:33935078-33934777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 122

               
               
               Conread position:784-1089
               
               
               Cow position:chr17:16855334-16855032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):273, 70

               
               
               Conread position:784-1089
               
               
               Cow position:chr17:21770439-21770745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):270, 0

               
               
               Conread position:784-1089
               
               
               Cow position:chr17:23510692-23510374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:223
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):87, 58

               
               
               Conread position:784-1089
               
               
               Cow position:chr17:29156142-29156443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):270, 103

               
               
               Conread position:784-1089
               
               
               Cow position:chr17:33791866-33792148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:220
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):270, 105

               
               
               Conread position:784-1090
               
               
               Cow position:chr17:2150950-2151245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):104, 78

               
               
               Conread position:784-1108
               
               
               Cow position:chr17:16118687-16118375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):311, 36

               
               
               Conread position:784-1112
               
               
               Cow position:chr17:20091845-20091518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:236
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):177, 81

               
               
               Conread position:785-908
               
               
               Cow position:chr17:28025312-28025187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:99
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:785-938
               
               
               Cow position:chr17:12674686-12674533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:113
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:785-1048
               
               
               Cow position:chr17:36816426-36816682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:785-1053
               
               
               Cow position:chr17:3401432-3401697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:785-1076
               
               
               Cow position:chr17:2838793-2839085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):198, 0

               
               
               Conread position:785-1083
               
               
               Cow position:chr17:1883021-1883307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:785-1086
               
               
               Cow position:chr17:23722381-23722678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):252, 52

               
               
               Conread position:785-1089
               
               
               Cow position:chr17:2176743-2177045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):269, 183

               
               
               Conread position:785-1089
               
               
               Cow position:chr17:18591191-18591488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 55

               
               
               Conread position:785-1089
               
               
               Cow position:chr17:43991251-43991553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:785-1094
               
               
               Cow position:chr17:6081271-6081574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):243, 122

               
               
               Conread position:785-1108
               
               
               Cow position:chr17:24292397-24292718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):231, 10

               
               
               Conread position:785-1108
               
               
               Cow position:chr17:33290200-33289878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):283, 187

               
               
               Conread position:786-1085
               
               
               Cow position:chr17:39913720-39913424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):194, 88

               
               
               Conread position:789-1089
               
               
               Cow position:chr17:19234549-19234846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:202
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:790-1025
               
               
               Cow position:chr17:9905729-9905495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):154, 0

               
               
               Conread position:790-1113
               
               
               Cow position:chr17:2078422-2078733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):321, 67

               
               
               Conread position:791-1007
               
               
               Cow position:chr17:4570015-4570223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:792-1088
               
               
               Cow position:chr17:1564951-1565246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):262, 138

               
               
               Conread position:792-1090
               
               
               Cow position:chr17:17127762-17128071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:225
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):32, 192

               
               
               Conread position:793-1004
               
               
               Cow position:chr17:23280229-23280021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):17, 22

               
               
               Conread position:793-1069
               
               
               Cow position:chr17:22237327-22237599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):17, 22

               
               
               Conread position:793-1084
               
               
               Cow position:chr17:27434394-27434691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:201
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):212, 56

               
               
               Conread position:799-1089
               
               
               Cow position:chr17:9752572-9752855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:203
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):122, 38

               
               
               Conread position:800-1119
               
               
               Cow position:chr17:158059-158382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:224
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):235, 57

               
               
               Conread position:802-1003
               
               
               Cow position:chr17:31050643-31050448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:802-1016
               
               
               Cow position:chr17:29820912-29821126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):8, 13

               
               
               Conread position:802-1077
               
               
               Cow position:chr17:13707526-13707788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:802-1083
               
               
               Cow position:chr17:932178-932461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):69, 112

               
               
               Conread position:802-1083
               
               
               Cow position:chr17:10843046-10843322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:802-1083
               
               
               Cow position:chr17:15721382-15721656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):257, 69

               
               
               Conread position:802-1089
               
               
               Cow position:chr17:10286080-10285792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):233, 68

               
               
               Conread position:802-1089
               
               
               Cow position:chr17:11775454-11775177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):8, 13

               
               
               Conread position:802-1089
               
               
               Cow position:chr17:15325458-15325171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):252, 127

               
               
               Conread position:802-1089
               
               
               Cow position:chr17:38917251-38916963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):252, 0

               
               
               Conread position:802-1089
               
               
               Cow position:chr17:44641693-44641405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):252, 0

               
               
               Conread position:803-1079
               
               
               Cow position:chr17:14871452-14871723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:203
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):224, 54

               
               
               Conread position:804-1084
               
               
               Cow position:chr17:21766676-21766957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):250, 0

               
               
               Conread position:804-1089
               
               
               Cow position:chr17:18850269-18850551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):6, 11

               
               
               Conread position:805-1089
               
               
               Cow position:chr17:29228662-29228937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):56, 151

               
               
               Conread position:810-1075
               
               
               Cow position:chr17:11618987-11619252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:195
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):244, 158

               
               
               Conread position:812-1081
               
               
               Cow position:chr17:11024688-11024960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):193, 26

               
               
               Conread position:813-1089
               
               
               Cow position:chr17:13936344-13936069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:185
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):242, 17

               
               
               Conread position:813-1118
               
               
               Cow position:chr17:15229243-15228941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):241, 19

               
               
               Conread position:815-1089
               
               
               Cow position:chr17:20054928-20055192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:817-1003
               
               
               Cow position:chr17:24333730-24333918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):45, 61

               
               
               Conread position:817-1048
               
               
               Cow position:chr17:1706211-1706443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:174
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:817-1089
               
               
               Cow position:chr17:2178660-2178928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):193, 94

               
               
               Conread position:819-1003
               
               
               Cow position:chr17:17382879-17383063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:820-1089
               
               
               Cow position:chr17:14250322-14250043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:193
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):37, 18

               
               
               Conread position:820-1092
               
               
               Cow position:chr17:31311433-31311163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:196
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):132, 46

               
               
               Conread position:828-986
               
               
               Cow position:chr17:51267-51110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:829-1089
               
               
               Cow position:chr17:37529168-37528907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):225, 0

               
               
               Conread position:834-1089
               
               
               Cow position:chr17:11084315-11084070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):82, 76

               
               
               Conread position:839-1089
               
               
               Cow position:chr17:26829925-26829679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):215, 18

               
               
               Conread position:849-1048
               
               
               Cow position:chr17:23052956-23053156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:149
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:854-1085
               
               
               Cow position:chr17:41549934-41549707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:170
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):125, 29

               
               
               Conread position:854-1089
               
               
               Cow position:chr17:20210054-20209816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):161, 113

               
               
               Conread position:854-1089
               
               
               Cow position:chr17:34236422-34236186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):200, 0

               
               
               Conread position:854-1089
               
               
               Cow position:chr17:43471759-43471526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:179
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):200, 17

               
               
               Conread position:856-1031
               
               
               Cow position:chr17:12669250-12669077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:125
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:856-1089
               
               
               Cow position:chr17:44865476-44865243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:164
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):201, 121

               
               
               Conread position:856-1107
               
               
               Cow position:chr17:2269638-2269889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:183
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):198, 128

               
               
               Conread position:856-1125
               
               
               Cow position:chr17:17221148-17221415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):197, 0

               
               
               Conread position:857-1089
               
               
               Cow position:chr17:30265-30498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:175
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):197, 0

               
               
               Conread position:857-1089
               
               
               Cow position:chr17:6611853-6612087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:142
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:858-1108
               
               
               Cow position:chr17:29212467-29212717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:189
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):200, 224

               
               
               Conread position:861-1089
               
               
               Cow position:chr17:20033275-20033501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):101, 113

               
               
               Conread position:862-1089
               
               
               Cow position:chr17:29075504-29075290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):27, 13

               
               
               Conread position:872-1070
               
               
               Cow position:chr17:11588227-11588027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):125, 0

               
               
               Conread position:872-1084
               
               
               Cow position:chr17:43145512-43145301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):182, 80

               
               
               Conread position:874-1084
               
               
               Cow position:chr17:11381165-11381373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):180, 154

               
               
               Conread position:876-1089
               
               
               Cow position:chr17:18241849-18242063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):178, 0

               
               
               Conread position:876-1094
               
               
               Cow position:chr17:43453204-43452985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):179, 0

               
               
               Conread position:880-1088
               
               
               Cow position:chr17:19369300-19369508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):9, 64

               
               
               Conread position:890-1069
               
               
               Cow position:chr17:24817652-24817833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:130
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):31, 21

               
               
               Conread position:892-1060
               
               
               Cow position:chr17:38629041-38629208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:139
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):117, 70

               
               
               Conread position:894-1076
               
               
               Cow position:chr17:16153994-16153811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):160, 0

               
               
               Conread position:896-1108
               
               
               Cow position:chr17:29079252-29079464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):158, 105

               
               
               Conread position:897-1089
               
               
               Cow position:chr17:43231296-43231103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):157, 0

               
               
               Conread position:901-1089
               
               
               Cow position:chr17:18198230-18198419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):134, 117

               
               
               Conread position:911-1089
               
               
               Cow position:chr17:18200624-18200802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):143, 153

               
               
               Conread position:914-1089
               
               
               Cow position:chr17:5639000-5638824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:142
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):140, 0

               
               
               Conread position:914-1089
               
               
               Cow position:chr17:5672628-5672452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:142
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):140, 0

               
               
               Conread position:915-1108
               
               
               Cow position:chr17:21304185-21304372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:920-1089
               
               
               Cow position:chr17:15350944-15351112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):134, 42

               
               
               Conread position:924-1108
               
               
               Cow position:chr17:16463982-16464167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:130
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):130, 0

               
               
               Conread position:928-1077
               
               
               Cow position:chr17:14865481-14865331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:928-1089
               
               
               Cow position:chr17:5806586-5806424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:129
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:928-1089
               
               
               Cow position:chr17:14006330-14006492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:928-1089
               
               
               Cow position:chr17:17957507-17957662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:929-1089
               
               
               Cow position:chr17:14932963-14932802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):125, 0

               
               
               Conread position:936-1089
               
               
               Cow position:chr17:16654180-16654026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:124
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:942-1077
               
               
               Cow position:chr17:11913936-11913802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:112
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):113, 20

               
               
               Conread position:942-1089
               
               
               Cow position:chr17:3305491-3305640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:952-1089
               
               
               Cow position:chr17:18777903-18777765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:111
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:956-1089
               
               
               Cow position:chr17:5546353-5546220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:107
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):98, 11

               
               
               Conread position:958-1075
               
               
               Cow position:chr17:14213083-14212966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:95
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):100, 27

               
               
               Conread position:963-1087
               
               
               Cow position:chr17:36790009-36790133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:102
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):95, 43

               
               
               Conread position:963-1089
               
               
               Cow position:chr17:8211999-8212126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:972-1089
               
               
               Cow position:chr17:20225549-20225667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:95
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:979-1089
               
               
               Cow position:chr17:4635821-4635710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:89
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:756-969
               
               
               Cow position:chr18:6459831-6460044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:147
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):110, 13

               
               
               Conread position:776-1013
               
               
               Cow position:chr18:33849044-33849277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:174
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):156, 0

               
               
               Conread position:777-1068
               
               
               Cow position:chr18:29223304-29223584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):144, 116

               
               
               Conread position:777-1089
               
               
               Cow position:chr18:28084015-28084335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 12

               
               
               Conread position:778-1047
               
               
               Cow position:chr18:36605421-36605685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):152, 76

               
               
               Conread position:782-995
               
               
               Cow position:chr18:22211274-22211478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):128, 0

               
               
               Conread position:782-1062
               
               
               Cow position:chr18:51581730-51581449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):82, 21

               
               
               Conread position:782-1067
               
               
               Cow position:chr18:45616768-45617055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:190
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):28, 33

               
               
               Conread position:782-1074
               
               
               Cow position:chr18:51273126-51272840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):29, 107

               
               
               Conread position:782-1084
               
               
               Cow position:chr18:36122856-36122563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:217
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):243, 106

               
               
               Conread position:782-1089
               
               
               Cow position:chr18:10977984-10978293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):134, 125

               
               
               Conread position:782-1089
               
               
               Cow position:chr18:14423246-14423554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:207
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):232, 162

               
               
               Conread position:782-1089
               
               
               Cow position:chr18:22681770-22682074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):272, 168

               
               
               Conread position:782-1089
               
               
               Cow position:chr18:26549747-26550049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:782-1089
               
               
               Cow position:chr18:41156157-41156444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:212
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):272, 30

               
               
               Conread position:783-939
               
               
               Cow position:chr18:18216491-18216647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-943
               
               
               Cow position:chr18:51619521-51619361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-944
               
               
               Cow position:chr18:23856015-23856171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):141, 0

               
               
               Conread position:783-964
               
               
               Cow position:chr18:16092801-16092982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-964
               
               
               Cow position:chr18:37700511-37700329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:139
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):179, 0

               
               
               Conread position:783-977
               
               
               Cow position:chr18:26336118-26335929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):144, 0

               
               
               Conread position:783-1004
               
               
               Cow position:chr18:56483697-56483479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):144, 79

               
               
               Conread position:783-1008
               
               
               Cow position:chr18:17943525-17943741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):10, 18

               
               
               Conread position:783-1016
               
               
               Cow position:chr18:42242053-42241820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):34, 91

               
               
               Conread position:783-1016
               
               
               Cow position:chr18:43472617-43472384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:173
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-1036
               
               
               Cow position:chr18:41838131-41837878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-1041
               
               
               Cow position:chr18:4953715-4953973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-1056
               
               
               Cow position:chr18:20270566-20270839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-1065
               
               
               Cow position:chr18:16391230-16390952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):253, 0

               
               
               Conread position:783-1067
               
               
               Cow position:chr18:15858150-15858431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:783-1069
               
               
               Cow position:chr18:27834801-27834514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1076
               
               
               Cow position:chr18:28928608-28928314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1077
               
               
               Cow position:chr18:37732671-37732965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-1080
               
               
               Cow position:chr18:25867205-25866908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 171

               
               
               Conread position:783-1082
               
               
               Cow position:chr18:23802005-23802304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):228, 153

               
               
               Conread position:783-1084
               
               
               Cow position:chr18:2297120-2296821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:199
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):79, 98

               
               
               Conread position:783-1084
               
               
               Cow position:chr18:14418959-14419260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 189

               
               
               Conread position:783-1084
               
               
               Cow position:chr18:35296149-35296451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1084
               
               
               Cow position:chr18:43285323-43285022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):256, 88

               
               
               Conread position:783-1084
               
               
               Cow position:chr18:47744733-47745036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:783-1086
               
               
               Cow position:chr18:40721626-40721332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 99

               
               
               Conread position:783-1089
               
               
               Cow position:chr18:603483-603176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr18:5202470-5202777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr18:5535955-5536260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 109

               
               
               Conread position:783-1089
               
               
               Cow position:chr18:6733981-6733675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 265

               
               
               Conread position:783-1089
               
               
               Cow position:chr18:9981601-9981908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr18:11869468-11869775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr18:16135681-16135376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):272, 106

               
               
               Conread position:783-1089
               
               
               Cow position:chr18:16173631-16173325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 193

               
               
               Conread position:783-1089
               
               
               Cow position:chr18:16463888-16463578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr18:17095788-17096098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:199
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):29, 172

               
               
               Conread position:783-1089
               
               
               Cow position:chr18:19310148-19310455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 20

               
               
               Conread position:783-1089
               
               
               Cow position:chr18:19355496-19355801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 240

               
               
               Conread position:783-1089
               
               
               Cow position:chr18:24037862-24037558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 164

               
               
               Conread position:783-1089
               
               
               Cow position:chr18:24211918-24212225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr18:24619410-24619717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr18:25923367-25923674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr18:27539414-27539720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 180

               
               
               Conread position:783-1089
               
               
               Cow position:chr18:27995003-27994696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr18:28969304-28969001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 92

               
               
               Conread position:783-1089
               
               
               Cow position:chr18:29798104-29797797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 22

               
               
               Conread position:783-1089
               
               
               Cow position:chr18:32656552-32656859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr18:35057007-35057314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 121

               
               
               Conread position:783-1089
               
               
               Cow position:chr18:36209393-36209086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):129, 56

               
               
               Conread position:783-1089
               
               
               Cow position:chr18:36648384-36648693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):196, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr18:36776257-36776565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 21

               
               
               Conread position:783-1089
               
               
               Cow position:chr18:37583477-37583169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):159, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr18:40342850-40342545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):227, 159

               
               
               Conread position:783-1089
               
               
               Cow position:chr18:40483977-40484288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 124

               
               
               Conread position:783-1089
               
               
               Cow position:chr18:49782296-49781991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:213
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):138, 12

               
               
               Conread position:783-1089
               
               
               Cow position:chr18:50093462-50093156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 74

               
               
               Conread position:783-1089
               
               
               Cow position:chr18:51459860-51459553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr18:51484572-51484879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 249

               
               
               Conread position:783-1089
               
               
               Cow position:chr18:51602684-51602377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr18:51663157-51663465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):188, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr18:51697627-51697934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr18:52574097-52574403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 229

               
               
               Conread position:783-1089
               
               
               Cow position:chr18:52630276-52629970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 229

               
               
               Conread position:783-1089
               
               
               Cow position:chr18:52655788-52656095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr18:55554232-55554539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1108
               
               
               Cow position:chr18:8884120-8884443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:222
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):34, 60

               
               
               Conread position:783-1108
               
               
               Cow position:chr18:15494389-15494078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:210
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:783-1108
               
               
               Cow position:chr18:38158560-38158235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 85

               
               
               Conread position:783-1108
               
               
               Cow position:chr18:41237513-41237845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:229
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):173, 57

               
               
               Conread position:783-1109
               
               
               Cow position:chr18:48529095-48529425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):121, 319

               
               
               Conread position:783-1111
               
               
               Cow position:chr18:22412369-22412691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):14, 116

               
               
               Conread position:783-1118
               
               
               Cow position:chr18:35293103-35293434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):325, 57

               
               
               Conread position:783-1123
               
               
               Cow position:chr18:33271621-33271960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 23

               
               
               Conread position:784-908
               
               
               Cow position:chr18:26243598-26243474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:98
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:784-966
               
               
               Cow position:chr18:13964981-13964798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):135, 0

               
               
               Conread position:784-1007
               
               
               Cow position:chr18:11271861-11271638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:784-1066
               
               
               Cow position:chr18:10889760-10890042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):134, 50

               
               
               Conread position:784-1077
               
               
               Cow position:chr18:28930421-28930137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):270, 12

               
               
               Conread position:784-1084
               
               
               Cow position:chr18:6104423-6104120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 127

               
               
               Conread position:784-1089
               
               
               Cow position:chr18:3362054-3362352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):270, 185

               
               
               Conread position:784-1089
               
               
               Cow position:chr18:15171856-15172144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):270, 31

               
               
               Conread position:784-1089
               
               
               Cow position:chr18:27989739-27990045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):135, 140

               
               
               Conread position:784-1089
               
               
               Cow position:chr18:32437119-32436813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):270, 0

               
               
               Conread position:784-1089
               
               
               Cow position:chr18:46874467-46874170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 74

               
               
               Conread position:785-1004
               
               
               Cow position:chr18:23072095-23071882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):25, 30

               
               
               Conread position:785-1034
               
               
               Cow position:chr18:39273669-39273918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:188
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):125, 156

               
               
               Conread position:785-1082
               
               
               Cow position:chr18:33607227-33607516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:785-1089
               
               
               Cow position:chr18:13509066-13508773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):269, 15

               
               
               Conread position:785-1089
               
               
               Cow position:chr18:14047254-14047540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:223
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:785-1089
               
               
               Cow position:chr18:14479071-14479372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:220
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):178, 56

               
               
               Conread position:785-1089
               
               
               Cow position:chr18:22182554-22182251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):269, 118

               
               
               Conread position:785-1089
               
               
               Cow position:chr18:29044720-29044422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):211, 30

               
               
               Conread position:785-1089
               
               
               Cow position:chr18:29863621-29863316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):135, 147

               
               
               Conread position:785-1089
               
               
               Cow position:chr18:32164948-32164643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):269, 0

               
               
               Conread position:785-1089
               
               
               Cow position:chr18:40758423-40758119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:218
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):133, 40

               
               
               Conread position:785-1089
               
               
               Cow position:chr18:54032701-54033006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):269, 0

               
               
               Conread position:785-1092
               
               
               Cow position:chr18:28268931-28268630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:193
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:785-1107
               
               
               Cow position:chr18:5569528-5569847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:221
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):313, 70

               
               
               Conread position:785-1108
               
               
               Cow position:chr18:22791433-22791116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 221

               
               
               Conread position:785-1123
               
               
               Cow position:chr18:36114458-36114128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:241
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):85, 184

               
               
               Conread position:786-1035
               
               
               Cow position:chr18:10222015-10222263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 15

               
               
               Conread position:787-1094
               
               
               Cow position:chr18:11778327-11778634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):197, 176

               
               
               Conread position:789-1089
               
               
               Cow position:chr18:16472184-16471890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):268, 29

               
               
               Conread position:789-1089
               
               
               Cow position:chr18:33893542-33893833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):227, 96

               
               
               Conread position:790-1089
               
               
               Cow position:chr18:6882267-6881967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):264, 0

               
               
               Conread position:793-1035
               
               
               Cow position:chr18:969679-969921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):127, 117

               
               
               Conread position:793-1089
               
               
               Cow position:chr18:24712987-24712699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:203
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):240, 208

               
               
               Conread position:796-1010
               
               
               Cow position:chr18:36909097-36908886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:796-1010
               
               
               Cow position:chr18:36913628-36913415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:796-1068
               
               
               Cow position:chr18:17335735-17335468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):258, 61

               
               
               Conread position:796-1084
               
               
               Cow position:chr18:10896194-10896477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):17, 170

               
               
               Conread position:799-980
               
               
               Cow position:chr18:1023196-1023014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:801-1089
               
               
               Cow position:chr18:35444369-35444080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):253, 0

               
               
               Conread position:802-1004
               
               
               Cow position:chr18:43113398-43113203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:802-1033
               
               
               Cow position:chr18:56426459-56426234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):119, 101

               
               
               Conread position:802-1083
               
               
               Cow position:chr18:17323396-17323662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:204
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):252, 67

               
               
               Conread position:802-1084
               
               
               Cow position:chr18:10113011-10113298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:209
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):82, 171

               
               
               Conread position:802-1084
               
               
               Cow position:chr18:17670958-17670679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:202
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):25, 131

               
               
               Conread position:802-1089
               
               
               Cow position:chr18:29071422-29071709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):252, 175

               
               
               Conread position:802-1108
               
               
               Cow position:chr18:30877263-30876958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:219
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):214, 55

               
               
               Conread position:802-1131
               
               
               Cow position:chr18:25848404-25848087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):293, 42

               
               
               Conread position:803-1089
               
               
               Cow position:chr18:25354519-25354805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):254, 157

               
               
               Conread position:803-1089
               
               
               Cow position:chr18:37508970-37509256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):254, 193

               
               
               Conread position:803-1099
               
               
               Cow position:chr18:32246298-32246015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):287, 130

               
               
               Conread position:803-1108
               
               
               Cow position:chr18:39812633-39812330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:203
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):125, 179

               
               
               Conread position:804-1089
               
               
               Cow position:chr18:29240089-29240375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):250, 34

               
               
               Conread position:805-1056
               
               
               Cow position:chr18:22481666-22481908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:171
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):233, 9

               
               
               Conread position:805-1108
               
               
               Cow position:chr18:37540717-37541021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:199
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):29, 173

               
               
               Conread position:807-1081
               
               
               Cow position:chr18:54167639-54167377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):249, 63

               
               
               Conread position:811-1068
               
               
               Cow position:chr18:41124713-41124461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):140, 88

               
               
               Conread position:812-1056
               
               
               Cow position:chr18:48390935-48391173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):6, 120

               
               
               Conread position:812-1076
               
               
               Cow position:chr18:38020402-38020132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):77, 129

               
               
               Conread position:813-1083
               
               
               Cow position:chr18:24452822-24453092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:190
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):245, 206

               
               
               Conread position:813-1089
               
               
               Cow position:chr18:36511645-36511922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):244, 0

               
               
               Conread position:814-1073
               
               
               Cow position:chr18:15505826-15506078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):178, 0

               
               
               Conread position:817-1034
               
               
               Cow position:chr18:41207956-41208178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):27, 80

               
               
               Conread position:817-1077
               
               
               Cow position:chr18:8965332-8965587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:188
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):98, 40

               
               
               Conread position:817-1083
               
               
               Cow position:chr18:36455682-36455950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):134, 209

               
               
               Conread position:819-960
               
               
               Cow position:chr18:19401291-19401150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:819-1089
               
               
               Cow position:chr18:13024872-13025147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:823-1089
               
               
               Cow position:chr18:24413317-24413583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):231, 214

               
               
               Conread position:823-1108
               
               
               Cow position:chr18:29074913-29075200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 277

               
               
               Conread position:824-1089
               
               
               Cow position:chr18:14128261-14127998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:824-1108
               
               
               Cow position:chr18:44024486-44024764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:187
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):209, 131

               
               
               Conread position:830-1108
               
               
               Cow position:chr18:21811008-21811287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):224, 0

               
               
               Conread position:832-1094
               
               
               Cow position:chr18:29767465-29767722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:185
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):27, 80

               
               
               Conread position:836-1090
               
               
               Cow position:chr18:23701763-23701509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 74

               
               
               Conread position:838-1076
               
               
               Cow position:chr18:54066027-54065789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:185
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):219, 73

               
               
               Conread position:839-1054
               
               
               Cow position:chr18:36234143-36233931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:840-1084
               
               
               Cow position:chr18:33752756-33753000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):56, 163

               
               
               Conread position:842-1089
               
               
               Cow position:chr18:43621685-43621437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:189
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):212, 0

               
               
               Conread position:844-1089
               
               
               Cow position:chr18:40195156-40195401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:184
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):210, 13

               
               
               Conread position:848-1089
               
               
               Cow position:chr18:13269955-13270198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:850-1083
               
               
               Cow position:chr18:1145494-1145261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):204, 229

               
               
               Conread position:860-1068
               
               
               Cow position:chr18:31564622-31564414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):197, 27

               
               
               Conread position:860-1089
               
               
               Cow position:chr18:23688230-23688460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):194, 0

               
               
               Conread position:860-1108
               
               
               Cow position:chr18:31995984-31996226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):119, 114

               
               
               Conread position:861-1108
               
               
               Cow position:chr18:33522289-33522534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):7, 17

               
               
               Conread position:872-1089
               
               
               Cow position:chr18:14152262-14152479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):166, 160

               
               
               Conread position:873-1084
               
               
               Cow position:chr18:2853719-2853507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:166
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):181, 0

               
               
               Conread position:874-1004
               
               
               Cow position:chr18:23071762-23071634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:99
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:875-1084
               
               
               Cow position:chr18:15486105-15485908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:875-1089
               
               
               Cow position:chr18:50835314-50835097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:169
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):141, 0

               
               
               Conread position:886-1084
               
               
               Cow position:chr18:32859938-32859739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):169, 0

               
               
               Conread position:899-1089
               
               
               Cow position:chr18:16463549-16463358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):155, 0

               
               
               Conread position:914-1083
               
               
               Cow position:chr18:89283-89454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):57, 83

               
               
               Conread position:914-1089
               
               
               Cow position:chr18:42080912-42080728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:914-1108
               
               
               Cow position:chr18:51653712-51653906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):140, 178

               
               
               Conread position:915-1069
               
               
               Cow position:chr18:40159367-40159522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):142, 0

               
               
               Conread position:916-1089
               
               
               Cow position:chr18:54630038-54629866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:125
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):94, 110

               
               
               Conread position:920-1077
               
               
               Cow position:chr18:29991897-29991741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:116
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):138, 0

               
               
               Conread position:920-1084
               
               
               Cow position:chr18:21174926-21175093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:920-1089
               
               
               Cow position:chr18:36457377-36457546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):134, 117

               
               
               Conread position:920-1108
               
               
               Cow position:chr18:23659777-23659587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):90, 181

               
               
               Conread position:922-1089
               
               
               Cow position:chr18:30606816-30606984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):132, 0

               
               
               Conread position:927-1089
               
               
               Cow position:chr18:40693362-40693527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:117
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):127, 0

               
               
               Conread position:928-1087
               
               
               Cow position:chr18:54046997-54047157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:928-1089
               
               
               Cow position:chr18:18215890-18215725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:928-1089
               
               
               Cow position:chr18:26243332-26243170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:129
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:933-1092
               
               
               Cow position:chr18:48547970-48548130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):125, 0

               
               
               Conread position:937-1089
               
               
               Cow position:chr18:16226370-16226520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:113
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):25, 33

               
               
               Conread position:946-1089
               
               
               Cow position:chr18:10291875-10292019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:114
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:960-1089
               
               
               Cow position:chr18:16094043-16094173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:966-1083
               
               
               Cow position:chr18:43430171-43430289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:93
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:780-969
               
               
               Cow position:chr19:5110348-5110161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:131
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:782-968
               
               
               Cow position:chr19:5176711-5176527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:131
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):8, 19

               
               
               Conread position:782-1056
               
               
               Cow position:chr19:35611844-35611565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):170, 0

               
               
               Conread position:782-1075
               
               
               Cow position:chr19:1579096-1579391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:782-1087
               
               
               Cow position:chr19:15154929-15154627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):70, 18

               
               
               Conread position:782-1089
               
               
               Cow position:chr19:10613214-10613522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):272, 0

               
               
               Conread position:782-1089
               
               
               Cow position:chr19:12776108-12776404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:782-1089
               
               
               Cow position:chr19:30758448-30758753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:223
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):79, 223

               
               
               Conread position:783-908
               
               
               Cow position:chr19:524787-524912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:98
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-908
               
               
               Cow position:chr19:1585454-1585579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:106
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):10, 18

               
               
               Conread position:783-908
               
               
               Cow position:chr19:16317622-16317497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-938
               
               
               Cow position:chr19:474509-474354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-939
               
               
               Cow position:chr19:158865-158709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-956
               
               
               Cow position:chr19:20107725-20107898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:100
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-960
               
               
               Cow position:chr19:15444876-15444699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-982
               
               
               Cow position:chr19:52148561-52148364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:783-998
               
               
               Cow position:chr19:1586280-1586071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):168, 55

               
               
               Conread position:783-1002
               
               
               Cow position:chr19:4057-4264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:161
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:783-1013
               
               
               Cow position:chr19:12651723-12651952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:174
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):201, 0

               
               
               Conread position:783-1026
               
               
               Cow position:chr19:266930-267172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:172
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):110, 125

               
               
               Conread position:783-1031
               
               
               Cow position:chr19:890209-889962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:183
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):10, 18

               
               
               Conread position:783-1033
               
               
               Cow position:chr19:10194629-10194874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):141, 0

               
               
               Conread position:783-1044
               
               
               Cow position:chr19:7293253-7292992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-1051
               
               
               Cow position:chr19:39696251-39696521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):35, 14

               
               
               Conread position:783-1055
               
               
               Cow position:chr19:1354295-1354023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-1055
               
               
               Cow position:chr19:1663017-1663283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:783-1056
               
               
               Cow position:chr19:7491087-7491358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:204
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):138, 111

               
               
               Conread position:783-1060
               
               
               Cow position:chr19:42581319-42581044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:193
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):271, 148

               
               
               Conread position:783-1066
               
               
               Cow position:chr19:55979902-55979621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):204, 0

               
               
               Conread position:783-1074
               
               
               Cow position:chr19:165141-164853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):275, 102

               
               
               Conread position:783-1074
               
               
               Cow position:chr19:30561134-30561429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:201
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):173, 248

               
               
               Conread position:783-1077
               
               
               Cow position:chr19:776501-776795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 203

               
               
               Conread position:783-1077
               
               
               Cow position:chr19:8207010-8206715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1077
               
               
               Cow position:chr19:28449809-28450107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 7

               
               
               Conread position:783-1082
               
               
               Cow position:chr19:34654117-34653820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:206
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):271, 62

               
               
               Conread position:783-1084
               
               
               Cow position:chr19:9705202-9704897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:221
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):223, 121

               
               
               Conread position:783-1084
               
               
               Cow position:chr19:33641058-33641360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:206
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):94, 123

               
               
               Conread position:783-1084
               
               
               Cow position:chr19:36188711-36189000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:206
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):148, 0

               
               
               Conread position:783-1084
               
               
               Cow position:chr19:40849500-40849200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):181, 99

               
               
               Conread position:783-1084
               
               
               Cow position:chr19:48477555-48477862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:783-1087
               
               
               Cow position:chr19:21337845-21337541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-1087
               
               
               Cow position:chr19:38559301-38558997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:200
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):25, 33

               
               
               Conread position:783-1088
               
               
               Cow position:chr19:20611321-20611627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1088
               
               
               Cow position:chr19:35621510-35621822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):169, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr19:131137-130826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:218
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):55, 276

               
               
               Conread position:783-1089
               
               
               Cow position:chr19:175455-175762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr19:197000-197302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 163

               
               
               Conread position:783-1089
               
               
               Cow position:chr19:207487-207794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):133, 124

               
               
               Conread position:783-1089
               
               
               Cow position:chr19:436349-436044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 89

               
               
               Conread position:783-1089
               
               
               Cow position:chr19:731003-730697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):136, 178

               
               
               Conread position:783-1089
               
               
               Cow position:chr19:2270314-2270007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):142, 127

               
               
               Conread position:783-1089
               
               
               Cow position:chr19:4388570-4388877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr19:5732488-5732789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 61

               
               
               Conread position:783-1089
               
               
               Cow position:chr19:5902014-5902321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr19:6554965-6555265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:217
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):145, 74

               
               
               Conread position:783-1089
               
               
               Cow position:chr19:7345021-7345328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr19:7480948-7480640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr19:12600197-12600485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:226
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):271, 67

               
               
               Conread position:783-1089
               
               
               Cow position:chr19:15871651-15871340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):141, 124

               
               
               Conread position:783-1089
               
               
               Cow position:chr19:16478878-16478573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr19:19388821-19389128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr19:22512232-22512539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr19:24734130-24734437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr19:28596364-28596670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):173, 25

               
               
               Conread position:783-1089
               
               
               Cow position:chr19:29393329-29393636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):275, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr19:29628851-29628560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr19:30037920-30037613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr19:30517790-30518098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):210, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr19:33119737-33119430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr19:33527834-33528141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr19:33876403-33876710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr19:33944554-33944861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 149

               
               
               Conread position:783-1089
               
               
               Cow position:chr19:35981759-35982065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:218
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):118, 81

               
               
               Conread position:783-1089
               
               
               Cow position:chr19:37653165-37653469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:222
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):73, 15

               
               
               Conread position:783-1089
               
               
               Cow position:chr19:39182551-39182246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 88

               
               
               Conread position:783-1089
               
               
               Cow position:chr19:39603472-39603176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):272, 108

               
               
               Conread position:783-1089
               
               
               Cow position:chr19:40016599-40016292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):272, 176

               
               
               Conread position:783-1089
               
               
               Cow position:chr19:40247764-40248071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr19:42465979-42466287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:210
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):177, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr19:42724663-42724960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):272, 83

               
               
               Conread position:783-1089
               
               
               Cow position:chr19:43148569-43148875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 67

               
               
               Conread position:783-1089
               
               
               Cow position:chr19:48533715-48534022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):272, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr19:55164666-55164363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 74

               
               
               Conread position:783-1089
               
               
               Cow position:chr19:55377882-55378189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr19:55842987-55843298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:783-1090
               
               
               Cow position:chr19:41321-41628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 201

               
               
               Conread position:783-1093
               
               
               Cow position:chr19:5781547-5781237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:220
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):88, 74

               
               
               Conread position:783-1095
               
               
               Cow position:chr19:30474161-30473848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 38

               
               
               Conread position:783-1108
               
               
               Cow position:chr19:28795332-28795012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 18

               
               
               Conread position:783-1108
               
               
               Cow position:chr19:37844791-37844467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):314, 41

               
               
               Conread position:783-1108
               
               
               Cow position:chr19:38811377-38811696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:231
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):20, 12

               
               
               Conread position:783-1108
               
               
               Cow position:chr19:47189464-47189132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 115

               
               
               Conread position:783-1109
               
               
               Cow position:chr19:743713-743388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:224
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):90, 41

               
               
               Conread position:783-1116
               
               
               Cow position:chr19:12553245-12552911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1118
               
               
               Cow position:chr19:344371-344709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 311

               
               
               Conread position:784-965
               
               
               Cow position:chr19:47669876-47670055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):35, 126

               
               
               Conread position:784-1089
               
               
               Cow position:chr19:2588183-2588483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):270, 87

               
               
               Conread position:784-1089
               
               
               Cow position:chr19:33624574-33624873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):32, 88

               
               
               Conread position:784-1089
               
               
               Cow position:chr19:39750212-39750512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:784-1108
               
               
               Cow position:chr19:29364382-29364689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):270, 73

               
               
               Conread position:785-1081
               
               
               Cow position:chr19:36418972-36419268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):136, 84

               
               
               Conread position:785-1083
               
               
               Cow position:chr19:1151663-1151951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:211
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):84, 71

               
               
               Conread position:785-1130
               
               
               Cow position:chr19:3114299-3114643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:236
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):209, 316

               
               
               Conread position:786-1056
               
               
               Cow position:chr19:20662229-20661951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 268

               
               
               Conread position:786-1089
               
               
               Cow position:chr19:28369522-28369815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:211
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):268, 104

               
               
               Conread position:790-920
               
               
               Cow position:chr19:27614444-27614314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:99
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:790-1106
               
               
               Cow position:chr19:33594494-33594189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):222, 87

               
               
               Conread position:793-1004
               
               
               Cow position:chr19:33649372-33649160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):65, 115

               
               
               Conread position:796-1089
               
               
               Cow position:chr19:542619-542329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:214
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):67, 14

               
               
               Conread position:796-1089
               
               
               Cow position:chr19:5044674-5044388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:208
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:796-1089
               
               
               Cow position:chr19:34985103-34985398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):258, 167

               
               
               Conread position:800-1089
               
               
               Cow position:chr19:17882972-17883259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 137

               
               
               Conread position:802-986
               
               
               Cow position:chr19:672795-672613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:802-1083
               
               
               Cow position:chr19:40834266-40833984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 162

               
               
               Conread position:802-1084
               
               
               Cow position:chr19:28801555-28801283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:209
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):151, 64

               
               
               Conread position:802-1089
               
               
               Cow position:chr19:1293356-1293644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 265

               
               
               Conread position:803-1080
               
               
               Cow position:chr19:55421050-55421332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):17, 140

               
               
               Conread position:805-1089
               
               
               Cow position:chr19:1487015-1486736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):278, 19

               
               
               Conread position:805-1089
               
               
               Cow position:chr19:6173520-6173245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):260, 48

               
               
               Conread position:805-1089
               
               
               Cow position:chr19:19406015-19406301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):94, 65

               
               
               Conread position:805-1089
               
               
               Cow position:chr19:29088767-29089044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):135, 65

               
               
               Conread position:805-1089
               
               
               Cow position:chr19:35994707-35994982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:188
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):13, 93

               
               
               Conread position:805-1089
               
               
               Cow position:chr19:39943882-39943605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:193
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):116, 21

               
               
               Conread position:807-1084
               
               
               Cow position:chr19:33675207-33674935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:197
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):204, 0

               
               
               Conread position:809-1089
               
               
               Cow position:chr19:45464159-45464443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:810-1118
               
               
               Cow position:chr19:374696-374391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):193, 100

               
               
               Conread position:812-1089
               
               
               Cow position:chr19:5384433-5384710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:187
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):248, 197

               
               
               Conread position:814-1003
               
               
               Cow position:chr19:48875487-48875674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):148, 27

               
               
               Conread position:814-1089
               
               
               Cow position:chr19:30516009-30515733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):240, 0

               
               
               Conread position:817-1077
               
               
               Cow position:chr19:27209380-27209128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):221, 51

               
               
               Conread position:817-1089
               
               
               Cow position:chr19:3176487-3176755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:193
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):104, 54

               
               
               Conread position:817-1089
               
               
               Cow position:chr19:36999200-36998934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):239, 21

               
               
               Conread position:817-1089
               
               
               Cow position:chr19:45149845-45149578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:178
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):240, 32

               
               
               Conread position:818-1089
               
               
               Cow position:chr19:42296841-42296564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):188, 206

               
               
               Conread position:822-1082
               
               
               Cow position:chr19:17803727-17803989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):176, 210

               
               
               Conread position:828-1089
               
               
               Cow position:chr19:7472095-7472354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:829-1089
               
               
               Cow position:chr19:405182-405441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:190
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):225, 133

               
               
               Conread position:830-1089
               
               
               Cow position:chr19:15070345-15070605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):224, 0

               
               
               Conread position:832-1003
               
               
               Cow position:chr19:22390956-22391126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):161, 0

               
               
               Conread position:834-1084
               
               
               Cow position:chr19:39725837-39726078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):99, 73

               
               
               Conread position:834-1089
               
               
               Cow position:chr19:14157063-14156809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):216, 121

               
               
               Conread position:835-1016
               
               
               Cow position:chr19:33907354-33907534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):17, 36

               
               
               Conread position:835-1031
               
               
               Cow position:chr19:36101725-36101531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:136
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):183, 0

               
               
               Conread position:835-1108
               
               
               Cow position:chr19:39340028-39339755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):115, 59

               
               
               Conread position:840-1089
               
               
               Cow position:chr19:34656072-34655826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):213, 86

               
               
               Conread position:844-1089
               
               
               Cow position:chr19:1564746-1564502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:181
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):210, 27

               
               
               Conread position:844-1089
               
               
               Cow position:chr19:3034067-3033823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:173
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):210, 50

               
               
               Conread position:844-1093
               
               
               Cow position:chr19:5024310-5024063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):210, 175

               
               
               Conread position:846-995
               
               
               Cow position:chr19:10864659-10864510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:850-1089
               
               
               Cow position:chr19:28911583-28911825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:850-1089
               
               
               Cow position:chr19:36351332-36351563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:860-1120
               
               
               Cow position:chr19:35382005-35381747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:199
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):190, 30

               
               
               Conread position:864-1089
               
               
               Cow position:chr19:33573649-33573423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):190, 0

               
               
               Conread position:873-1088
               
               
               Cow position:chr19:5716506-5716293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):180, 19

               
               
               Conread position:874-1034
               
               
               Cow position:chr19:14527728-14527889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:874-1089
               
               
               Cow position:chr19:48626137-48626353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:168
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 0

               
               
               Conread position:874-1112
               
               
               Cow position:chr19:799456-799694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):180, 98

               
               
               Conread position:874-1131
               
               
               Cow position:chr19:50558899-50559159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:172
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):19, 6

               
               
               Conread position:875-1089
               
               
               Cow position:chr19:9098689-9098906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):138, 36

               
               
               Conread position:877-1084
               
               
               Cow position:chr19:1585598-1585806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):180, 0

               
               
               Conread position:889-1089
               
               
               Cow position:chr19:20403376-20403578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:165
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:891-1108
               
               
               Cow position:chr19:25085304-25085521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:170
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):65, 87

               
               
               Conread position:894-1089
               
               
               Cow position:chr19:39394299-39394495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):163, 0

               
               
               Conread position:897-1089
               
               
               Cow position:chr19:31781672-31781865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):161, 0

               
               
               Conread position:897-1089
               
               
               Cow position:chr19:41205125-41204933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):157, 46

               
               
               Conread position:899-1077
               
               
               Cow position:chr19:27613684-27613503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:143
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):57, 73

               
               
               Conread position:900-1067
               
               
               Cow position:chr19:42866578-42866746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):156, 0

               
               
               Conread position:900-1089
               
               
               Cow position:chr19:40791252-40791062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):157, 0

               
               
               Conread position:915-1060
               
               
               Cow position:chr19:27082289-27082143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:116
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):139, 0

               
               
               Conread position:928-1089
               
               
               Cow position:chr19:16317076-16316913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:929-1077
               
               
               Cow position:chr19:44366787-44366634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:930-1108
               
               
               Cow position:chr19:9117944-9118123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:937-1108
               
               
               Cow position:chr19:47670053-47670223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):119, 21

               
               
               Conread position:941-1076
               
               
               Cow position:chr19:20672435-20672302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):117, 27

               
               
               Conread position:945-1089
               
               
               Cow position:chr19:42648235-42648090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:110
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):91, 9

               
               
               Conread position:951-1089
               
               
               Cow position:chr19:34906170-34906031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:104
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:952-1089
               
               
               Cow position:chr19:4447370-4447508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:952-1108
               
               
               Cow position:chr19:44395017-44394860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:343-1069
               
               
               Cow position:chr2:43209131-43209858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:728
               
               
               Alignm identity:171
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):714, 0

               
               
               Conread position:751-1089
               
               
               Cow position:chr2:4238144-4237804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:764-1088
               
               
               Cow position:chr2:66901916-66901585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 53

               
               
               Conread position:777-1089
               
               
               Cow position:chr2:47612791-47612478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):19, 26

               
               
               Conread position:780-1069
               
               
               Cow position:chr2:3769034-3768750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):253, 14

               
               
               Conread position:780-1089
               
               
               Cow position:chr2:4725402-4725703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):276, 25

               
               
               Conread position:781-1083
               
               
               Cow position:chr2:43106761-43107066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):222, 89

               
               
               Conread position:782-1076
               
               
               Cow position:chr2:33584371-33584084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:199
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):131, 206

               
               
               Conread position:782-1077
               
               
               Cow position:chr2:10739415-10739122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):272, 110

               
               
               Conread position:782-1078
               
               
               Cow position:chr2:44188872-44189170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):214, 0

               
               
               Conread position:782-1084
               
               
               Cow position:chr2:12695248-12694932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):234, 0

               
               
               Conread position:782-1089
               
               
               Cow position:chr2:312057-311748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:220
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):31, 38

               
               
               Conread position:782-1089
               
               
               Cow position:chr2:20351525-20351221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 118

               
               
               Conread position:782-1089
               
               
               Cow position:chr2:33081337-33081039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 19

               
               
               Conread position:782-1089
               
               
               Cow position:chr2:52653389-52653692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):48, 86

               
               
               Conread position:782-1089
               
               
               Cow position:chr2:76827589-76827889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):52, 12

               
               
               Conread position:782-1090
               
               
               Cow position:chr2:78765089-78765389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):276, 31

               
               
               Conread position:782-1108
               
               
               Cow position:chr2:32658889-32659205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):31, 199

               
               
               Conread position:782-1108
               
               
               Cow position:chr2:45918339-45918015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):134, 91

               
               
               Conread position:783-893
               
               
               Cow position:chr2:12203232-12203342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:88
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-901
               
               
               Cow position:chr2:31733089-31732973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:95
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:783-908
               
               
               Cow position:chr2:2085438-2085313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-908
               
               
               Cow position:chr2:24927844-24927969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-908
               
               
               Cow position:chr2:30379443-30379568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-908
               
               
               Cow position:chr2:44478036-44478161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:99
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-917
               
               
               Cow position:chr2:2209746-2209612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:100
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-917
               
               
               Cow position:chr2:2213570-2213436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:100
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-935
               
               
               Cow position:chr2:41046821-41046669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:113
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-939
               
               
               Cow position:chr2:45212254-45212099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:121
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:783-965
               
               
               Cow position:chr2:31417529-31417710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:783-976
               
               
               Cow position:chr2:50406406-50406599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:142
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):21, 46

               
               
               Conread position:783-991
               
               
               Cow position:chr2:32456644-32456439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:149
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):138, 47

               
               
               Conread position:783-993
               
               
               Cow position:chr2:21177498-21177708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:161
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-1004
               
               
               Cow position:chr2:11153554-11153333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:170
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):10, 18

               
               
               Conread position:783-1004
               
               
               Cow position:chr2:16301188-16301400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):218, 81

               
               
               Conread position:783-1004
               
               
               Cow position:chr2:71470201-71469972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):126, 19

               
               
               Conread position:783-1011
               
               
               Cow position:chr2:9910424-9910652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-1013
               
               
               Cow position:chr2:24517279-24517507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:162
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):45, 16

               
               
               Conread position:783-1015
               
               
               Cow position:chr2:32862191-32861965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:172
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):164, 0

               
               
               Conread position:783-1015
               
               
               Cow position:chr2:35440391-35440626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):14, 223

               
               
               Conread position:783-1016
               
               
               Cow position:chr2:81259558-81259791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-1029
               
               
               Cow position:chr2:24436772-24436527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):225, 0

               
               
               Conread position:783-1030
               
               
               Cow position:chr2:39935359-39935606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-1035
               
               
               Cow position:chr2:68381499-68381750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 0

               
               
               Conread position:783-1048
               
               
               Cow position:chr2:4834171-4833906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-1054
               
               
               Cow position:chr2:74469626-74469355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-1056
               
               
               Cow position:chr2:53183197-53183470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-1060
               
               
               Cow position:chr2:816902-817171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 85

               
               
               Conread position:783-1062
               
               
               Cow position:chr2:29968417-29968697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1063
               
               
               Cow position:chr2:28725013-28725298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):212, 235

               
               
               Conread position:783-1067
               
               
               Cow position:chr2:42501969-42502233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:205
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:783-1068
               
               
               Cow position:chr2:49452057-49451771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1070
               
               
               Cow position:chr2:65935814-65935528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 15

               
               
               Conread position:783-1075
               
               
               Cow position:chr2:72692209-72692502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1077
               
               
               Cow position:chr2:10123618-10123323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1077
               
               
               Cow position:chr2:34501563-34501858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1077
               
               
               Cow position:chr2:38082690-38082403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):254, 14

               
               
               Conread position:783-1077
               
               
               Cow position:chr2:41763698-41763985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 216

               
               
               Conread position:783-1077
               
               
               Cow position:chr2:46940622-46940908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:199
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:783-1077
               
               
               Cow position:chr2:57053995-57054290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1083
               
               
               Cow position:chr2:2096374-2096075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 194

               
               
               Conread position:783-1083
               
               
               Cow position:chr2:6698782-6698481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):188, 284

               
               
               Conread position:783-1083
               
               
               Cow position:chr2:8121127-8121428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1083
               
               
               Cow position:chr2:31450485-31450786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:209
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):146, 51

               
               
               Conread position:783-1083
               
               
               Cow position:chr2:34577001-34576705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 109

               
               
               Conread position:783-1083
               
               
               Cow position:chr2:46255935-46256234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):267, 0

               
               
               Conread position:783-1083
               
               
               Cow position:chr2:51413368-51413664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:200
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):66, 170

               
               
               Conread position:783-1084
               
               
               Cow position:chr2:4805303-4805006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):269, 105

               
               
               Conread position:783-1084
               
               
               Cow position:chr2:12595409-12595687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:217
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):274, 102

               
               
               Conread position:783-1084
               
               
               Cow position:chr2:16072719-16072415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:783-1084
               
               
               Cow position:chr2:22134261-22133960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):136, 124

               
               
               Conread position:783-1084
               
               
               Cow position:chr2:25756551-25756248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:218
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):83, 51

               
               
               Conread position:783-1084
               
               
               Cow position:chr2:34572890-34573196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:226
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):10, 18

               
               
               Conread position:783-1084
               
               
               Cow position:chr2:54346548-54346834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:210
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):240, 74

               
               
               Conread position:783-1084
               
               
               Cow position:chr2:54715872-54716170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):263, 155

               
               
               Conread position:783-1084
               
               
               Cow position:chr2:62039593-62039309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:204
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):225, 18

               
               
               Conread position:783-1084
               
               
               Cow position:chr2:63068447-63068148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):229, 27

               
               
               Conread position:783-1087
               
               
               Cow position:chr2:29031295-29031598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):173, 35

               
               
               Conread position:783-1089
               
               
               Cow position:chr2:279813-279506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr2:432420-432106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:213
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):98, 55

               
               
               Conread position:783-1089
               
               
               Cow position:chr2:1187434-1187125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr2:2181839-2181533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 249

               
               
               Conread position:783-1089
               
               
               Cow position:chr2:2603106-2603404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):175, 49

               
               
               Conread position:783-1089
               
               
               Cow position:chr2:3622952-3623259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr2:3668492-3668798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr2:3787516-3787212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):79, 125

               
               
               Conread position:783-1089
               
               
               Cow position:chr2:4180683-4180379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 29

               
               
               Conread position:783-1089
               
               
               Cow position:chr2:4417620-4417321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr2:4451618-4451312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 282

               
               
               Conread position:783-1089
               
               
               Cow position:chr2:4917638-4917331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr2:5116379-5116686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr2:6004404-6004098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr2:6965358-6965664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):232, 222

               
               
               Conread position:783-1089
               
               
               Cow position:chr2:8529117-8529410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 124

               
               
               Conread position:783-1089
               
               
               Cow position:chr2:9714101-9714408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr2:9962639-9962332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):272, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr2:10183797-10183490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr2:10262976-10262670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 102

               
               
               Conread position:783-1089
               
               
               Cow position:chr2:10609357-10609050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 18

               
               
               Conread position:783-1089
               
               
               Cow position:chr2:10741709-10741402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr2:11725808-11726115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):177, 284

               
               
               Conread position:783-1089
               
               
               Cow position:chr2:11814119-11813812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):277, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr2:12285638-12285941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 15

               
               
               Conread position:783-1089
               
               
               Cow position:chr2:13067574-13067267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr2:14208408-14208107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):263, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr2:15964244-15963937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 18

               
               
               Conread position:783-1089
               
               
               Cow position:chr2:16327492-16327186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):272, 221

               
               
               Conread position:783-1089
               
               
               Cow position:chr2:17266002-17265695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr2:17808103-17807820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:222
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):274, 61

               
               
               Conread position:783-1089
               
               
               Cow position:chr2:18021482-18021169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr2:18350968-18350660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):159, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr2:19013789-19014093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 30

               
               
               Conread position:783-1089
               
               
               Cow position:chr2:19960775-19961057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:227
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr2:20870462-20870158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:219
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):89, 113

               
               
               Conread position:783-1089
               
               
               Cow position:chr2:20917738-20917433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):272, 7

               
               
               Conread position:783-1089
               
               
               Cow position:chr2:22080343-22080650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):232, 22

               
               
               Conread position:783-1089
               
               
               Cow position:chr2:23642935-23642628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr2:24688111-24688418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr2:24876753-24876455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:219
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):30, 58

               
               
               Conread position:783-1089
               
               
               Cow position:chr2:25023529-25023856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:236
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr2:25742835-25742533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):142, 45

               
               
               Conread position:783-1089
               
               
               Cow position:chr2:25886123-25885811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 260

               
               
               Conread position:783-1089
               
               
               Cow position:chr2:25930975-25930673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):223, 27

               
               
               Conread position:783-1089
               
               
               Cow position:chr2:26905682-26905985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 108

               
               
               Conread position:783-1089
               
               
               Cow position:chr2:29218411-29218703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 114

               
               
               Conread position:783-1089
               
               
               Cow position:chr2:31407914-31407607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr2:31644666-31644975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):269, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr2:32409812-32409506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 109

               
               
               Conread position:783-1089
               
               
               Cow position:chr2:33090710-33091011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:208
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):25, 106

               
               
               Conread position:783-1089
               
               
               Cow position:chr2:33263924-33263615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):225, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr2:36047870-36047574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:214
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):275, 24

               
               
               Conread position:783-1089
               
               
               Cow position:chr2:36983085-36983390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 35

               
               
               Conread position:783-1089
               
               
               Cow position:chr2:37324318-37324624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 47

               
               
               Conread position:783-1089
               
               
               Cow position:chr2:37451697-37451406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr2:38512456-38512149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr2:39119033-39119340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr2:39424363-39424666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):240, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr2:39676329-39676008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):166, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr2:40249047-40249374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:233
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr2:41156608-41156917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:224
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):217, 37

               
               
               Conread position:783-1089
               
               
               Cow position:chr2:42668275-42667968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr2:43757211-43756904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr2:44093798-44094105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr2:45937290-45936990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 49

               
               
               Conread position:783-1089
               
               
               Cow position:chr2:46183104-46182797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):137, 149

               
               
               Conread position:783-1089
               
               
               Cow position:chr2:47035973-47035664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr2:47182319-47182012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr2:49301590-49301283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):233, 177

               
               
               Conread position:783-1089
               
               
               Cow position:chr2:49474332-49474639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr2:49629757-49630064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr2:50060565-50060258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr2:50079995-50080302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 17

               
               
               Conread position:783-1089
               
               
               Cow position:chr2:52497644-52497337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr2:52621207-52621513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):270, 210

               
               
               Conread position:783-1089
               
               
               Cow position:chr2:53003773-53003466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr2:53332234-53332541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr2:53542371-53542677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 177

               
               
               Conread position:783-1089
               
               
               Cow position:chr2:53556602-53556903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):228, 30

               
               
               Conread position:783-1089
               
               
               Cow position:chr2:54739916-54740211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 198

               
               
               Conread position:783-1089
               
               
               Cow position:chr2:55481783-55481481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 127

               
               
               Conread position:783-1089
               
               
               Cow position:chr2:56896068-56895761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):47, 225

               
               
               Conread position:783-1089
               
               
               Cow position:chr2:57338388-57338693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):133, 111

               
               
               Conread position:783-1089
               
               
               Cow position:chr2:59411322-59411015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr2:62675575-62675267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr2:62730957-62731264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr2:62734602-62734907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 132

               
               
               Conread position:783-1089
               
               
               Cow position:chr2:63000356-63000663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr2:64791393-64791084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr2:67977571-67977267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:219
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):79, 55

               
               
               Conread position:783-1089
               
               
               Cow position:chr2:70259560-70259867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr2:70499195-70498893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):273, 167

               
               
               Conread position:783-1089
               
               
               Cow position:chr2:70669141-70669448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr2:72791144-72790839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 71

               
               
               Conread position:783-1089
               
               
               Cow position:chr2:72904071-72903763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):139, 77

               
               
               Conread position:783-1089
               
               
               Cow position:chr2:72931653-72931347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 251

               
               
               Conread position:783-1089
               
               
               Cow position:chr2:72940318-72940016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 126

               
               
               Conread position:783-1089
               
               
               Cow position:chr2:74238232-74237925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr2:74390494-74390199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:205
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):272, 45

               
               
               Conread position:783-1089
               
               
               Cow position:chr2:77858761-77859062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):275, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr2:80162574-80162267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr2:80289271-80288960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):173, 78

               
               
               Conread position:783-1089
               
               
               Cow position:chr2:80875931-80875624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 19

               
               
               Conread position:783-1090
               
               
               Cow position:chr2:4741796-4742104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1091
               
               
               Cow position:chr2:16330627-16330935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):275, 55

               
               
               Conread position:783-1106
               
               
               Cow position:chr2:49633205-49633515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):58, 110

               
               
               Conread position:783-1106
               
               
               Cow position:chr2:78748722-78749044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):226, 213

               
               
               Conread position:783-1107
               
               
               Cow position:chr2:53662941-53663271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):221, 0

               
               
               Conread position:783-1108
               
               
               Cow position:chr2:2410410-2410084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):273, 309

               
               
               Conread position:783-1108
               
               
               Cow position:chr2:4018149-4017835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:222
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):57, 15

               
               
               Conread position:783-1108
               
               
               Cow position:chr2:5867882-5867551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:232
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):79, 88

               
               
               Conread position:783-1108
               
               
               Cow position:chr2:7905375-7905702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 63

               
               
               Conread position:783-1108
               
               
               Cow position:chr2:12200314-12199995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):74, 7

               
               
               Conread position:783-1108
               
               
               Cow position:chr2:25978491-25978816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 309

               
               
               Conread position:783-1108
               
               
               Cow position:chr2:28655030-28655354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 109

               
               
               Conread position:783-1108
               
               
               Cow position:chr2:35884042-35883712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 313

               
               
               Conread position:783-1108
               
               
               Cow position:chr2:62683095-62683422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):227, 0

               
               
               Conread position:783-1109
               
               
               Cow position:chr2:32432906-32432604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:232
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):271, 63

               
               
               Conread position:783-1109
               
               
               Cow position:chr2:37395811-37396138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 309

               
               
               Conread position:783-1113
               
               
               Cow position:chr2:16306504-16306834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 55

               
               
               Conread position:783-1118
               
               
               Cow position:chr2:575987-576324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 308

               
               
               Conread position:783-1118
               
               
               Cow position:chr2:39116225-39116560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):136, 121

               
               
               Conread position:783-1127
               
               
               Cow position:chr2:54698963-54699305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 17

               
               
               Conread position:784-939
               
               
               Cow position:chr2:42330433-42330280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:784-998
               
               
               Cow position:chr2:47620077-47619865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):75, 127

               
               
               Conread position:784-1075
               
               
               Cow position:chr2:75193457-75193746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 265

               
               
               Conread position:784-1076
               
               
               Cow position:chr2:1427204-1426922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:784-1083
               
               
               Cow position:chr2:51024731-51024438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):212, 0

               
               
               Conread position:784-1084
               
               
               Cow position:chr2:34490853-34491144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):272, 123

               
               
               Conread position:784-1087
               
               
               Cow position:chr2:62051504-62051205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):270, 148

               
               
               Conread position:784-1089
               
               
               Cow position:chr2:6540445-6540751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):270, 0

               
               
               Conread position:784-1089
               
               
               Cow position:chr2:10468029-10468335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):273, 0

               
               
               Conread position:784-1089
               
               
               Cow position:chr2:15569649-15569348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:784-1089
               
               
               Cow position:chr2:48850814-48850504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 17

               
               
               Conread position:784-1089
               
               
               Cow position:chr2:54655903-54655608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):269, 54

               
               
               Conread position:784-1089
               
               
               Cow position:chr2:83249223-83248918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:215
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):15, 21

               
               
               Conread position:784-1108
               
               
               Cow position:chr2:23492232-23492550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):270, 92

               
               
               Conread position:784-1108
               
               
               Cow position:chr2:45914234-45913917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):221, 35

               
               
               Conread position:784-1108
               
               
               Cow position:chr2:48360372-48360704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:243
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):125, 24

               
               
               Conread position:785-924
               
               
               Cow position:chr2:13602656-13602795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:785-979
               
               
               Cow position:chr2:36883229-36883039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):185, 117

               
               
               Conread position:785-985
               
               
               Cow position:chr2:52160445-52160255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:785-1048
               
               
               Cow position:chr2:1992868-1993130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:189
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:785-1076
               
               
               Cow position:chr2:11688811-11689097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):248, 28

               
               
               Conread position:785-1076
               
               
               Cow position:chr2:43526410-43526123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):284, 208

               
               
               Conread position:785-1077
               
               
               Cow position:chr2:52128887-52128594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):280, 0

               
               
               Conread position:785-1084
               
               
               Cow position:chr2:1693345-1693641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:215
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):230, 17

               
               
               Conread position:785-1084
               
               
               Cow position:chr2:5916721-5917022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):137, 0

               
               
               Conread position:785-1084
               
               
               Cow position:chr2:6291353-6291654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:206
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):11, 16

               
               
               Conread position:785-1084
               
               
               Cow position:chr2:29956632-29956337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):223, 52

               
               
               Conread position:785-1084
               
               
               Cow position:chr2:43878338-43878638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 127

               
               
               Conread position:785-1087
               
               
               Cow position:chr2:60955070-60955367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):265, 97

               
               
               Conread position:785-1089
               
               
               Cow position:chr2:383686-383386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):177, 0

               
               
               Conread position:785-1089
               
               
               Cow position:chr2:981421-981738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:225
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:785-1089
               
               
               Cow position:chr2:10971510-10971809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):272, 83

               
               
               Conread position:785-1089
               
               
               Cow position:chr2:14882673-14882975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):273, 27

               
               
               Conread position:785-1089
               
               
               Cow position:chr2:20857136-20856856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):268, 125

               
               
               Conread position:785-1089
               
               
               Cow position:chr2:21982323-21982018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):272, 0

               
               
               Conread position:785-1089
               
               
               Cow position:chr2:25590705-25591005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):272, 162

               
               
               Conread position:785-1089
               
               
               Cow position:chr2:28647192-28646888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):272, 52

               
               
               Conread position:785-1089
               
               
               Cow position:chr2:28796278-28796584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 118

               
               
               Conread position:785-1089
               
               
               Cow position:chr2:40539957-40540259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):125, 133

               
               
               Conread position:785-1089
               
               
               Cow position:chr2:50980721-50980417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):136, 125

               
               
               Conread position:785-1089
               
               
               Cow position:chr2:57937831-57938133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):269, 64

               
               
               Conread position:785-1094
               
               
               Cow position:chr2:13727150-13726857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:224
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):12, 68

               
               
               Conread position:785-1108
               
               
               Cow position:chr2:5979451-5979764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:231
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):232, 122

               
               
               Conread position:785-1108
               
               
               Cow position:chr2:15572632-15572304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:228
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):35, 64

               
               
               Conread position:786-1056
               
               
               Cow position:chr2:33389868-33390130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:200
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):95, 69

               
               
               Conread position:786-1077
               
               
               Cow position:chr2:6949396-6949689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 85

               
               
               Conread position:786-1089
               
               
               Cow position:chr2:38486810-38487114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):268, 0

               
               
               Conread position:786-1089
               
               
               Cow position:chr2:43877157-43877459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 142

               
               
               Conread position:786-1108
               
               
               Cow position:chr2:7370104-7370424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 38

               
               
               Conread position:787-1001
               
               
               Cow position:chr2:23549567-23549776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):53, 42

               
               
               Conread position:788-1077
               
               
               Cow position:chr2:34593090-34592802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):264, 202

               
               
               Conread position:788-1089
               
               
               Cow position:chr2:36059009-36058704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):204, 0

               
               
               Conread position:788-1132
               
               
               Cow position:chr2:40455638-40455982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:237
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):130, 111

               
               
               Conread position:789-1003
               
               
               Cow position:chr2:30941013-30941229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):116, 11

               
               
               Conread position:789-1034
               
               
               Cow position:chr2:48817858-48818090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:790-1074
               
               
               Cow position:chr2:54727636-54727355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:190
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):131, 22

               
               
               Conread position:790-1089
               
               
               Cow position:chr2:46497695-46497988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):129, 28

               
               
               Conread position:792-932
               
               
               Cow position:chr2:5285076-5284938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:106
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:792-1094
               
               
               Cow position:chr2:14557287-14556990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:219
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):212, 92

               
               
               Conread position:793-1106
               
               
               Cow position:chr2:36103914-36104227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):219, 14

               
               
               Conread position:796-1089
               
               
               Cow position:chr2:19213318-19213031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:210
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):182, 66

               
               
               Conread position:796-1123
               
               
               Cow position:chr2:63289469-63289151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:223
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):18, 223

               
               
               Conread position:797-1089
               
               
               Cow position:chr2:20279207-20278914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):257, 0

               
               
               Conread position:797-1089
               
               
               Cow position:chr2:74860414-74860696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:206
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):209, 35

               
               
               Conread position:799-1084
               
               
               Cow position:chr2:12221835-12221559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):172, 55

               
               
               Conread position:799-1089
               
               
               Cow position:chr2:33393989-33393697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):143, 234

               
               
               Conread position:801-1089
               
               
               Cow position:chr2:34502218-34502499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:204
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):169, 0

               
               
               Conread position:801-1089
               
               
               Cow position:chr2:67188387-67188107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):257, 170

               
               
               Conread position:802-908
               
               
               Cow position:chr2:5902545-5902440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:91
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:802-1002
               
               
               Cow position:chr2:41783080-41783282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):8, 23

               
               
               Conread position:802-1004
               
               
               Cow position:chr2:35358459-35358661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):60, 174

               
               
               Conread position:802-1048
               
               
               Cow position:chr2:6065604-6065376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:802-1060
               
               
               Cow position:chr2:3839715-3839963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:190
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):255, 136

               
               
               Conread position:802-1069
               
               
               Cow position:chr2:43811801-43812069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):255, 0

               
               
               Conread position:802-1077
               
               
               Cow position:chr2:71165067-71164793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):228, 26

               
               
               Conread position:802-1084
               
               
               Cow position:chr2:1844621-1844343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):177, 117

               
               
               Conread position:802-1084
               
               
               Cow position:chr2:12330391-12330663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:203
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:802-1087
               
               
               Cow position:chr2:11501393-11501675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:194
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):61, 195

               
               
               Conread position:802-1087
               
               
               Cow position:chr2:16333351-16333627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):119, 55

               
               
               Conread position:802-1089
               
               
               Cow position:chr2:1200376-1200089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):255, 158

               
               
               Conread position:802-1089
               
               
               Cow position:chr2:12184226-12184507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:208
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):251, 37

               
               
               Conread position:802-1089
               
               
               Cow position:chr2:28847024-28847312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):252, 0

               
               
               Conread position:802-1089
               
               
               Cow position:chr2:34619294-34619582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):252, 0

               
               
               Conread position:802-1089
               
               
               Cow position:chr2:44230301-44230017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 237

               
               
               Conread position:802-1089
               
               
               Cow position:chr2:72016265-72016553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):252, 0

               
               
               Conread position:802-1108
               
               
               Cow position:chr2:778990-778694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:218
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):253, 68

               
               
               Conread position:802-1108
               
               
               Cow position:chr2:5997279-5997586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):252, 129

               
               
               Conread position:802-1130
               
               
               Cow position:chr2:31706030-31705695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:233
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):105, 173

               
               
               Conread position:803-1085
               
               
               Cow position:chr2:6882753-6883036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:201
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):251, 0

               
               
               Conread position:804-1041
               
               
               Cow position:chr2:9174826-9174603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):47, 104

               
               
               Conread position:804-1089
               
               
               Cow position:chr2:15750743-15751030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 0

               
               
               Conread position:804-1094
               
               
               Cow position:chr2:16321381-16321666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):254, 54

               
               
               Conread position:805-1076
               
               
               Cow position:chr2:18159208-18158925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:188
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:805-1084
               
               
               Cow position:chr2:1106728-1106439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):113, 77

               
               
               Conread position:805-1089
               
               
               Cow position:chr2:46272760-46272483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):57, 42

               
               
               Conread position:806-1089
               
               
               Cow position:chr2:31456193-31456472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:208
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):156, 14

               
               
               Conread position:806-1118
               
               
               Cow position:chr2:51479624-51479937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):248, 187

               
               
               Conread position:807-1108
               
               
               Cow position:chr2:41183480-41183776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):251, 50

               
               
               Conread position:808-1089
               
               
               Cow position:chr2:24054841-24055116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):246, 6

               
               
               Conread position:809-1069
               
               
               Cow position:chr2:13005778-13006026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:179
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):245, 45

               
               
               Conread position:810-992
               
               
               Cow position:chr2:44497318-44497147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:810-1089
               
               
               Cow position:chr2:11685459-11685734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:203
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):35, 153

               
               
               Conread position:810-1089
               
               
               Cow position:chr2:37810068-37809792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):111, 97

               
               
               Conread position:813-1089
               
               
               Cow position:chr2:35302918-35303190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:203
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):108, 94

               
               
               Conread position:813-1112
               
               
               Cow position:chr2:77942391-77942102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):10, 29

               
               
               Conread position:814-1001
               
               
               Cow position:chr2:24432447-24432266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:814-1011
               
               
               Cow position:chr2:6240757-6240954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:814-1031
               
               
               Cow position:chr2:43765516-43765303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):149, 0

               
               
               Conread position:814-1089
               
               
               Cow position:chr2:10657373-10657105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):239, 27

               
               
               Conread position:814-1089
               
               
               Cow position:chr2:31410420-31410143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 150

               
               
               Conread position:814-1089
               
               
               Cow position:chr2:45493970-45493707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:189
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):244, 52

               
               
               Conread position:814-1089
               
               
               Cow position:chr2:73992186-73992463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:201
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):173, 156

               
               
               Conread position:814-1094
               
               
               Cow position:chr2:16753427-16753153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):240, 115

               
               
               Conread position:815-1075
               
               
               Cow position:chr2:11735200-11735460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:174
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):48, 23

               
               
               Conread position:815-1089
               
               
               Cow position:chr2:25384922-25385199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:816-1076
               
               
               Cow position:chr2:26079985-26080242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):5, 169

               
               
               Conread position:816-1089
               
               
               Cow position:chr2:12752812-12752541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):238, 125

               
               
               Conread position:817-1011
               
               
               Cow position:chr2:36075360-36075174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:817-1084
               
               
               Cow position:chr2:14281002-14281259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):237, 118

               
               
               Conread position:817-1089
               
               
               Cow position:chr2:2772192-2772463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:197
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):40, 113

               
               
               Conread position:817-1089
               
               
               Cow position:chr2:9688835-9688563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):236, 25

               
               
               Conread position:817-1109
               
               
               Cow position:chr2:4400665-4400373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):237, 253

               
               
               Conread position:817-1110
               
               
               Cow position:chr2:64577859-64577567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:196
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):49, 95

               
               
               Conread position:818-1080
               
               
               Cow position:chr2:41161723-41161986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:193
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):48, 170

               
               
               Conread position:818-1106
               
               
               Cow position:chr2:16318904-16319192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:204
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):240, 53

               
               
               Conread position:819-1016
               
               
               Cow position:chr2:11705075-11705272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:149
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:819-1089
               
               
               Cow position:chr2:79907837-79907563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:188
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):132, 179

               
               
               Conread position:820-1068
               
               
               Cow position:chr2:36507105-36506862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):213, 36

               
               
               Conread position:820-1076
               
               
               Cow position:chr2:18062944-18062696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):101, 87

               
               
               Conread position:820-1077
               
               
               Cow position:chr2:42516569-42516318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):215, 65

               
               
               Conread position:820-1089
               
               
               Cow position:chr2:37603034-37602771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:182
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):201, 14

               
               
               Conread position:820-1089
               
               
               Cow position:chr2:42363931-42363661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):233, 0

               
               
               Conread position:820-1089
               
               
               Cow position:chr2:54900551-54900829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):51, 35

               
               
               Conread position:821-1089
               
               
               Cow position:chr2:55474776-55474504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):189, 148

               
               
               Conread position:822-1004
               
               
               Cow position:chr2:54425659-54425479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):58, 89

               
               
               Conread position:825-1108
               
               
               Cow position:chr2:35949921-35949642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):229, 58

               
               
               Conread position:825-1118
               
               
               Cow position:chr2:4224553-4224844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 55

               
               
               Conread position:832-1076
               
               
               Cow position:chr2:77468706-77468462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):111, 32

               
               
               Conread position:833-1089
               
               
               Cow position:chr2:16718422-16718165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):211, 116

               
               
               Conread position:835-1089
               
               
               Cow position:chr2:53030574-53030829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 65

               
               
               Conread position:838-1090
               
               
               Cow position:chr2:32063242-32062989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):219, 0

               
               
               Conread position:839-1077
               
               
               Cow position:chr2:67743401-67743640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:177
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):218, 0

               
               
               Conread position:840-1089
               
               
               Cow position:chr2:20895401-20895155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):39, 139

               
               
               Conread position:840-1089
               
               
               Cow position:chr2:51922076-51921827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:190
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):217, 204

               
               
               Conread position:844-1108
               
               
               Cow position:chr2:9590705-9590963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):17, 49

               
               
               Conread position:849-1083
               
               
               Cow position:chr2:16497652-16497418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:175
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):208, 230

               
               
               Conread position:852-1084
               
               
               Cow position:chr2:34470342-34470120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:171
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):9, 56

               
               
               Conread position:852-1084
               
               
               Cow position:chr2:46489217-46488986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):11, 64

               
               
               Conread position:852-1089
               
               
               Cow position:chr2:13489335-13489566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):20, 56

               
               
               Conread position:853-1084
               
               
               Cow position:chr2:20977541-20977772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):201, 46

               
               
               Conread position:853-1089
               
               
               Cow position:chr2:18521314-18521076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:182
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:854-1089
               
               
               Cow position:chr2:15885432-15885196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:185
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):200, 0

               
               
               Conread position:854-1089
               
               
               Cow position:chr2:36910642-36910406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:183
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):200, 0

               
               
               Conread position:856-1083
               
               
               Cow position:chr2:44987918-44987688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:856-1089
               
               
               Cow position:chr2:66686504-66686270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:183
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):198, 0

               
               
               Conread position:856-1093
               
               
               Cow position:chr2:11898892-11899125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:184
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):198, 35

               
               
               Conread position:857-1089
               
               
               Cow position:chr2:4931634-4931403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:174
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):200, 49

               
               
               Conread position:857-1089
               
               
               Cow position:chr2:19049361-19049131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):197, 11

               
               
               Conread position:858-1089
               
               
               Cow position:chr2:75913395-75913625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:158
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):212, 138

               
               
               Conread position:858-1089
               
               
               Cow position:chr2:84490334-84490111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):84, 52

               
               
               Conread position:859-1084
               
               
               Cow position:chr2:2591175-2590952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:168
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:860-1089
               
               
               Cow position:chr2:28638506-28638279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):11, 56

               
               
               Conread position:860-1089
               
               
               Cow position:chr2:53204619-53204389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):194, 0

               
               
               Conread position:860-1089
               
               
               Cow position:chr2:63890728-63890498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:172
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):194, 0

               
               
               Conread position:861-1077
               
               
               Cow position:chr2:44932499-44932281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:159
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):25, 106

               
               
               Conread position:861-1084
               
               
               Cow position:chr2:12238481-12238257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:171
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):195, 0

               
               
               Conread position:864-1016
               
               
               Cow position:chr2:78301848-78301695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:868-1083
               
               
               Cow position:chr2:56798802-56798590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):185, 42

               
               
               Conread position:872-1089
               
               
               Cow position:chr2:46351556-46351337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:166
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:874-1089
               
               
               Cow position:chr2:4339880-4340096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:167
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):179, 0

               
               
               Conread position:874-1089
               
               
               Cow position:chr2:10196756-10196545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):39, 9

               
               
               Conread position:875-1089
               
               
               Cow position:chr2:6528351-6528566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:168
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 0

               
               
               Conread position:875-1112
               
               
               Cow position:chr2:28617865-28617630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):222, 143

               
               
               Conread position:875-1112
               
               
               Cow position:chr2:44476963-44476728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:177
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):182, 72

               
               
               Conread position:876-1076
               
               
               Cow position:chr2:31265952-31265752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):178, 87

               
               
               Conread position:876-1089
               
               
               Cow position:chr2:56054274-56054487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:156
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:878-1083
               
               
               Cow position:chr2:31487898-31488103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):176, 24

               
               
               Conread position:878-1089
               
               
               Cow position:chr2:74761406-74761618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):179, 0

               
               
               Conread position:879-1089
               
               
               Cow position:chr2:27075148-27075355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):175, 20

               
               
               Conread position:880-1076
               
               
               Cow position:chr2:15689832-15690029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):136, 104

               
               
               Conread position:880-1089
               
               
               Cow position:chr2:22682351-22682141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:160
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):174, 0

               
               
               Conread position:880-1108
               
               
               Cow position:chr2:15060438-15060212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):11, 83

               
               
               Conread position:881-1083
               
               
               Cow position:chr2:168612-168410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):13, 166

               
               
               Conread position:882-1089
               
               
               Cow position:chr2:56831279-56831059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):43, 98

               
               
               Conread position:888-1004
               
               
               Cow position:chr2:38662165-38662049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:96
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:888-1054
               
               
               Cow position:chr2:30909011-30909179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):20, 120

               
               
               Conread position:892-1089
               
               
               Cow position:chr2:58466222-58466412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):162, 107

               
               
               Conread position:893-1089
               
               
               Cow position:chr2:22306739-22306537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:897-1089
               
               
               Cow position:chr2:11694888-11695075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):160, 94

               
               
               Conread position:897-1090
               
               
               Cow position:chr2:1201967-1202160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:155
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):87, 15

               
               
               Conread position:897-1108
               
               
               Cow position:chr2:26219498-26219286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):157, 0

               
               
               Conread position:901-1089
               
               
               Cow position:chr2:26130320-26130131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):153, 0

               
               
               Conread position:901-1089
               
               
               Cow position:chr2:72534833-72535021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):156, 84

               
               
               Conread position:914-1084
               
               
               Cow position:chr2:82895553-82895381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):99, 107

               
               
               Conread position:914-1089
               
               
               Cow position:chr2:36996935-36997110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):140, 132

               
               
               Conread position:918-1089
               
               
               Cow position:chr2:23275134-23275306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):25, 13

               
               
               Conread position:920-1089
               
               
               Cow position:chr2:4923461-4923295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):128, 105

               
               
               Conread position:920-1095
               
               
               Cow position:chr2:40312093-40312268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:131
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):134, 172

               
               
               Conread position:920-1108
               
               
               Cow position:chr2:50564880-50565070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:921-1087
               
               
               Cow position:chr2:41046563-41046401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:131
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):134, 8

               
               
               Conread position:921-1108
               
               
               Cow position:chr2:62819910-62819722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):133, 172

               
               
               Conread position:925-1076
               
               
               Cow position:chr2:5902160-5902009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):132, 6

               
               
               Conread position:925-1089
               
               
               Cow position:chr2:2018138-2018303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):132, 0

               
               
               Conread position:925-1089
               
               
               Cow position:chr2:23995149-23995313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):129, 5

               
               
               Conread position:927-1083
               
               
               Cow position:chr2:10692788-10692632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):127, 91

               
               
               Conread position:928-1089
               
               
               Cow position:chr2:2209090-2208928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:928-1089
               
               
               Cow position:chr2:2212914-2212752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:928-1089
               
               
               Cow position:chr2:17119501-17119340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:125
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):126, 40

               
               
               Conread position:928-1089
               
               
               Cow position:chr2:30379853-30380013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:124
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):126, 100

               
               
               Conread position:930-1089
               
               
               Cow position:chr2:9187300-9187142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:930-1089
               
               
               Cow position:chr2:86496233-86496393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:931-1089
               
               
               Cow position:chr2:826365-826204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:932-1087
               
               
               Cow position:chr2:27329268-27329424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:932-1089
               
               
               Cow position:chr2:57587503-57587345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:935-1089
               
               
               Cow position:chr2:36018910-36018756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):119, 101

               
               
               Conread position:937-1108
               
               
               Cow position:chr2:27357664-27357835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:131
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):117, 83

               
               
               Conread position:939-1089
               
               
               Cow position:chr2:81147399-81147245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:942-1089
               
               
               Cow position:chr2:19288720-19288576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):112, 49

               
               
               Conread position:944-1089
               
               
               Cow position:chr2:46264894-46265040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:944-1089
               
               
               Cow position:chr2:50432052-50431906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:944-1110
               
               
               Cow position:chr2:70524348-70524515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):113, 148

               
               
               Conread position:949-1089
               
               
               Cow position:chr2:9700121-9700262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:964-1089
               
               
               Cow position:chr2:12209590-12209464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:100
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:969-1089
               
               
               Cow position:chr2:79978464-79978343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:94
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:978-1089
               
               
               Cow position:chr2:49827912-49827800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:90
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:981-1089
               
               
               Cow position:chr2:15241533-15241424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:88
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:777-1089
               
               
               Cow position:chr20:24904585-24904287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):276, 50

               
               
               Conread position:781-1089
               
               
               Cow position:chr20:42853439-42853138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:205
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):140, 57

               
               
               Conread position:782-1084
               
               
               Cow position:chr20:651830-651538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:194
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:782-1088
               
               
               Cow position:chr20:7512982-7512679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):170, 206

               
               
               Conread position:782-1089
               
               
               Cow position:chr20:10035776-10035482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):81, 99

               
               
               Conread position:782-1089
               
               
               Cow position:chr20:16106397-16106705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):272, 0

               
               
               Conread position:782-1089
               
               
               Cow position:chr20:18489896-18490206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):134, 8

               
               
               Conread position:782-1089
               
               
               Cow position:chr20:21397770-21398076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 33

               
               
               Conread position:782-1089
               
               
               Cow position:chr20:35127620-35127926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):137, 75

               
               
               Conread position:782-1098
               
               
               Cow position:chr20:5076937-5077252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 191

               
               
               Conread position:782-1124
               
               
               Cow position:chr20:27994586-27994233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 159

               
               
               Conread position:783-908
               
               
               Cow position:chr20:18356181-18356306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:100
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-938
               
               
               Cow position:chr20:17667205-17667360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:111
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-959
               
               
               Cow position:chr20:10866848-10866672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):130, 141

               
               
               Conread position:783-960
               
               
               Cow position:chr20:31076490-31076313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:126
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-966
               
               
               Cow position:chr20:10495933-10496117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):79, 128

               
               
               Conread position:783-968
               
               
               Cow position:chr20:22186184-22185999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):74, 146

               
               
               Conread position:783-977
               
               
               Cow position:chr20:2654079-2654272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):80, 55

               
               
               Conread position:783-977
               
               
               Cow position:chr20:29313756-29313951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):150, 0

               
               
               Conread position:783-986
               
               
               Cow position:chr20:3509837-3510039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:157
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:783-992
               
               
               Cow position:chr20:9587716-9587924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):185, 0

               
               
               Conread position:783-997
               
               
               Cow position:chr20:23900313-23900523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:783-1001
               
               
               Cow position:chr20:12693991-12694208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):42, 131

               
               
               Conread position:783-1016
               
               
               Cow position:chr20:6018582-6018345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):138, 81

               
               
               Conread position:783-1028
               
               
               Cow position:chr20:6500742-6500499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:185
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:783-1034
               
               
               Cow position:chr20:37271036-37271288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:181
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:783-1035
               
               
               Cow position:chr20:28163993-28164244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:187
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 0

               
               
               Conread position:783-1035
               
               
               Cow position:chr20:40007705-40007453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-1047
               
               
               Cow position:chr20:23801854-23802105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:783-1051
               
               
               Cow position:chr20:20939093-20938826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):177, 0

               
               
               Conread position:783-1055
               
               
               Cow position:chr20:16189791-16189519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-1064
               
               
               Cow position:chr20:11719728-11720009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 180

               
               
               Conread position:783-1067
               
               
               Cow position:chr20:34459362-34459077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):177, 234

               
               
               Conread position:783-1076
               
               
               Cow position:chr20:5794724-5795018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:207
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):84, 178

               
               
               Conread position:783-1077
               
               
               Cow position:chr20:8970941-8970648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 17

               
               
               Conread position:783-1077
               
               
               Cow position:chr20:14876227-14876527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 40

               
               
               Conread position:783-1077
               
               
               Cow position:chr20:31846882-31846582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:208
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):233, 0

               
               
               Conread position:783-1081
               
               
               Cow position:chr20:3677410-3677125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):254, 45

               
               
               Conread position:783-1081
               
               
               Cow position:chr20:8098742-8099036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:203
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):254, 28

               
               
               Conread position:783-1083
               
               
               Cow position:chr20:13954582-13954875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):223, 127

               
               
               Conread position:783-1084
               
               
               Cow position:chr20:10921971-10921671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 140

               
               
               Conread position:783-1084
               
               
               Cow position:chr20:13816576-13816874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):232, 81

               
               
               Conread position:783-1084
               
               
               Cow position:chr20:14757306-14757018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 127

               
               
               Conread position:783-1084
               
               
               Cow position:chr20:30776668-30776973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):62, 112

               
               
               Conread position:783-1084
               
               
               Cow position:chr20:33295997-33295697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):148, 106

               
               
               Conread position:783-1089
               
               
               Cow position:chr20:753388-753698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):133, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr20:825730-826037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr20:3808819-3808516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 74

               
               
               Conread position:783-1089
               
               
               Cow position:chr20:5086387-5086080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr20:5538132-5538444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):270, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr20:6136039-6135734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 146

               
               
               Conread position:783-1089
               
               
               Cow position:chr20:7597907-7597600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr20:7810885-7810583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 18

               
               
               Conread position:783-1089
               
               
               Cow position:chr20:9338972-9339281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 163

               
               
               Conread position:783-1089
               
               
               Cow position:chr20:10404652-10404953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):173, 127

               
               
               Conread position:783-1089
               
               
               Cow position:chr20:12435445-12435142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):177, 121

               
               
               Conread position:783-1089
               
               
               Cow position:chr20:13506608-13506304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 253

               
               
               Conread position:783-1089
               
               
               Cow position:chr20:13765843-13766149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 213

               
               
               Conread position:783-1089
               
               
               Cow position:chr20:14925692-14925385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr20:15294987-15295277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):139, 51

               
               
               Conread position:783-1089
               
               
               Cow position:chr20:15800010-15799703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr20:16559591-16559275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr20:16944467-16944755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):287, 70

               
               
               Conread position:783-1089
               
               
               Cow position:chr20:17658282-17657975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 18

               
               
               Conread position:783-1089
               
               
               Cow position:chr20:18092951-18092644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr20:19306435-19306128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr20:19425141-19425449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 249

               
               
               Conread position:783-1089
               
               
               Cow position:chr20:20440020-20439712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr20:22061227-22060920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr20:23804929-23804623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 109

               
               
               Conread position:783-1089
               
               
               Cow position:chr20:24542376-24542683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr20:24568319-24568012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr20:25845673-25845366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr20:27345034-27344727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr20:28444398-28444090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):240, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr20:28724706-28725014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):177, 252

               
               
               Conread position:783-1089
               
               
               Cow position:chr20:30578813-30579120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):270, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr20:30688825-30689133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):263, 284

               
               
               Conread position:783-1089
               
               
               Cow position:chr20:31785423-31785116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 18

               
               
               Conread position:783-1089
               
               
               Cow position:chr20:33181533-33181241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:212
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):115, 65

               
               
               Conread position:783-1089
               
               
               Cow position:chr20:33598014-33597707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr20:34642960-34643274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr20:35108237-35107930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr20:35159630-35159328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 25

               
               
               Conread position:783-1089
               
               
               Cow position:chr20:38957088-38957395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr20:39234181-39234488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr20:42085483-42085790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr20:42923507-42923810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 32

               
               
               Conread position:783-1090
               
               
               Cow position:chr20:25987716-25988010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):271, 17

               
               
               Conread position:783-1091
               
               
               Cow position:chr20:6240183-6239876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):287, 74

               
               
               Conread position:783-1093
               
               
               Cow position:chr20:23466700-23466389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1108
               
               
               Cow position:chr20:3782754-3782428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:238
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):101, 61

               
               
               Conread position:783-1108
               
               
               Cow position:chr20:15116760-15117087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):233, 40

               
               
               Conread position:783-1108
               
               
               Cow position:chr20:22208572-22208897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 201

               
               
               Conread position:783-1108
               
               
               Cow position:chr20:24399915-24399589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1108
               
               
               Cow position:chr20:25659071-25658748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:783-1110
               
               
               Cow position:chr20:37169276-37168950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 134

               
               
               Conread position:783-1113
               
               
               Cow position:chr20:27876431-27876759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):143, 74

               
               
               Conread position:783-1113
               
               
               Cow position:chr20:36418767-36418438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:226
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):138, 116

               
               
               Conread position:783-1118
               
               
               Cow position:chr20:20731204-20731545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:238
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):136, 207

               
               
               Conread position:783-1121
               
               
               Cow position:chr20:23393062-23392725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):327, 0

               
               
               Conread position:784-1026
               
               
               Cow position:chr20:13789059-13789301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):26, 95

               
               
               Conread position:784-1089
               
               
               Cow position:chr20:9410315-9410621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 160

               
               
               Conread position:784-1089
               
               
               Cow position:chr20:28560930-28560628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 8

               
               
               Conread position:784-1089
               
               
               Cow position:chr20:30385294-30384988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):270, 0

               
               
               Conread position:784-1108
               
               
               Cow position:chr20:6259342-6259017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 310

               
               
               Conread position:784-1108
               
               
               Cow position:chr20:19844730-19845052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 70

               
               
               Conread position:784-1108
               
               
               Cow position:chr20:32085507-32085178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):222, 24

               
               
               Conread position:785-954
               
               
               Cow position:chr20:13677772-13677606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):125, 0

               
               
               Conread position:785-1003
               
               
               Cow position:chr20:5225609-5225397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:160
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:785-1077
               
               
               Cow position:chr20:21016063-21015767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 255

               
               
               Conread position:785-1084
               
               
               Cow position:chr20:35143951-35143650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 91

               
               
               Conread position:785-1089
               
               
               Cow position:chr20:10494151-10494455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):270, 288

               
               
               Conread position:785-1089
               
               
               Cow position:chr20:19440868-19441165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):269, 43

               
               
               Conread position:785-1089
               
               
               Cow position:chr20:21719510-21719814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):269, 288

               
               
               Conread position:785-1089
               
               
               Cow position:chr20:31504282-31504587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):269, 0

               
               
               Conread position:785-1089
               
               
               Cow position:chr20:35093492-35093795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):270, 151

               
               
               Conread position:785-1090
               
               
               Cow position:chr20:14721423-14721120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 176

               
               
               Conread position:785-1108
               
               
               Cow position:chr20:34967935-34968258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):272, 119

               
               
               Conread position:786-1076
               
               
               Cow position:chr20:28294265-28294556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:787-1089
               
               
               Cow position:chr20:8906298-8906598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:200
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):14, 29

               
               
               Conread position:787-1108
               
               
               Cow position:chr20:13654380-13654058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):33, 129

               
               
               Conread position:790-1089
               
               
               Cow position:chr20:14867426-14867134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):259, 0

               
               
               Conread position:790-1108
               
               
               Cow position:chr20:8445370-8445688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):264, 302

               
               
               Conread position:793-1118
               
               
               Cow position:chr20:6476479-6476805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 18

               
               
               Conread position:796-1089
               
               
               Cow position:chr20:28034892-28034608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:214
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):258, 42

               
               
               Conread position:796-1089
               
               
               Cow position:chr20:35131972-35132265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:204
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):160, 27

               
               
               Conread position:797-1089
               
               
               Cow position:chr20:9996496-9996791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 115

               
               
               Conread position:799-1084
               
               
               Cow position:chr20:30397166-30396878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):127, 57

               
               
               Conread position:799-1089
               
               
               Cow position:chr20:19261619-19261330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:198
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):67, 33

               
               
               Conread position:799-1090
               
               
               Cow position:chr20:28887339-28887630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):11, 166

               
               
               Conread position:800-1089
               
               
               Cow position:chr20:19364903-19364628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:800-1108
               
               
               Cow position:chr20:870049-869738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:215
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):212, 170

               
               
               Conread position:802-1025
               
               
               Cow position:chr20:15093604-15093380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:173
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):164, 182

               
               
               Conread position:802-1032
               
               
               Cow position:chr20:36375809-36375577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):214, 0

               
               
               Conread position:802-1089
               
               
               Cow position:chr20:1534561-1534283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):206, 81

               
               
               Conread position:802-1089
               
               
               Cow position:chr20:2016838-2016555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:802-1089
               
               
               Cow position:chr20:7568997-7568707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:802-1089
               
               
               Cow position:chr20:7593484-7593194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:802-1089
               
               
               Cow position:chr20:14741155-14741444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):160, 0

               
               
               Conread position:802-1089
               
               
               Cow position:chr20:15090406-15090115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):164, 0

               
               
               Conread position:802-1089
               
               
               Cow position:chr20:25331181-25330904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:190
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:802-1089
               
               
               Cow position:chr20:30146404-30146692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):252, 0

               
               
               Conread position:802-1089
               
               
               Cow position:chr20:34231887-34231598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):252, 0

               
               
               Conread position:802-1118
               
               
               Cow position:chr20:35019887-35020210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 302

               
               
               Conread position:803-1026
               
               
               Cow position:chr20:20982724-20982947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):63, 10

               
               
               Conread position:803-1089
               
               
               Cow position:chr20:4243012-4243291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:194
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):7, 12

               
               
               Conread position:803-1089
               
               
               Cow position:chr20:30431242-30431528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):251, 233

               
               
               Conread position:803-1100
               
               
               Cow position:chr20:26800314-26800016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):251, 0

               
               
               Conread position:804-1089
               
               
               Cow position:chr20:16515322-16515580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):251, 107

               
               
               Conread position:804-1108
               
               
               Cow position:chr20:15067787-15068090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 7

               
               
               Conread position:805-1089
               
               
               Cow position:chr20:20092271-20092556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):249, 0

               
               
               Conread position:805-1089
               
               
               Cow position:chr20:20352370-20352093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):135, 33

               
               
               Conread position:805-1089
               
               
               Cow position:chr20:30737259-30737531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):249, 92

               
               
               Conread position:810-1034
               
               
               Cow position:chr20:10063001-10062778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):153, 0

               
               
               Conread position:812-1084
               
               
               Cow position:chr20:12685604-12685323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:812-1089
               
               
               Cow position:chr20:28247271-28246993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):242, 0

               
               
               Conread position:813-1089
               
               
               Cow position:chr20:3307854-3308134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):118, 25

               
               
               Conread position:813-1089
               
               
               Cow position:chr20:12332656-12332940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:200
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):107, 181

               
               
               Conread position:813-1089
               
               
               Cow position:chr20:12568336-12568059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):241, 0

               
               
               Conread position:814-1056
               
               
               Cow position:chr20:23839442-23839202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):149, 0

               
               
               Conread position:814-1082
               
               
               Cow position:chr20:38654874-38654608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):243, 57

               
               
               Conread position:814-1088
               
               
               Cow position:chr20:21836978-21837254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):111, 99

               
               
               Conread position:815-1076
               
               
               Cow position:chr20:14930221-14930488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):24, 10

               
               
               Conread position:815-1089
               
               
               Cow position:chr20:13025343-13025073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):26, 52

               
               
               Conread position:815-1089
               
               
               Cow position:chr20:28102416-28102691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):222, 209

               
               
               Conread position:815-1108
               
               
               Cow position:chr20:37955872-37955579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):241, 62

               
               
               Conread position:817-997
               
               
               Cow position:chr20:13278479-13278293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):135, 0

               
               
               Conread position:817-1118
               
               
               Cow position:chr20:12047481-12047780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:215
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):272, 31

               
               
               Conread position:818-1077
               
               
               Cow position:chr20:22048351-22048611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):236, 0

               
               
               Conread position:820-1016
               
               
               Cow position:chr20:19669475-19669279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:820-1089
               
               
               Cow position:chr20:14511685-14511952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:197
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):159, 51

               
               
               Conread position:822-950
               
               
               Cow position:chr20:9294506-9294634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:100
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:825-1109
               
               
               Cow position:chr20:2942129-2942410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):229, 52

               
               
               Conread position:826-1077
               
               
               Cow position:chr20:5503754-5503502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):228, 0

               
               
               Conread position:826-1089
               
               
               Cow position:chr20:13325103-13325367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):227, 0

               
               
               Conread position:827-1089
               
               
               Cow position:chr20:10685728-10685988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):27, 88

               
               
               Conread position:831-1089
               
               
               Cow position:chr20:10790454-10790713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):223, 0

               
               
               Conread position:834-1118
               
               
               Cow position:chr20:14872734-14872447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:195
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):85, 68

               
               
               Conread position:840-1084
               
               
               Cow position:chr20:18608297-18608541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:177
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):96, 17

               
               
               Conread position:840-1108
               
               
               Cow position:chr20:12997260-12996984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):77, 66

               
               
               Conread position:846-1084
               
               
               Cow position:chr20:774671-774910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:186
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):208, 0

               
               
               Conread position:853-1089
               
               
               Cow position:chr20:32165078-32164847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):68, 11

               
               
               Conread position:854-1089
               
               
               Cow position:chr20:15526766-15527002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):200, 0

               
               
               Conread position:856-1089
               
               
               Cow position:chr20:28956928-28956694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:176
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):201, 0

               
               
               Conread position:857-1012
               
               
               Cow position:chr20:39284205-39284361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:857-1089
               
               
               Cow position:chr20:8350073-8349843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):56, 62

               
               
               Conread position:857-1089
               
               
               Cow position:chr20:19018380-19018147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):200, 0

               
               
               Conread position:858-1083
               
               
               Cow position:chr20:13575682-13575463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:169
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):196, 13

               
               
               Conread position:859-1066
               
               
               Cow position:chr20:14672364-14672576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:156
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:863-1077
               
               
               Cow position:chr20:39445080-39445293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):170, 53

               
               
               Conread position:871-1067
               
               
               Cow position:chr20:8890355-8890549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):11, 148

               
               
               Conread position:872-1084
               
               
               Cow position:chr20:13050533-13050322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:155
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):204, 101

               
               
               Conread position:874-1083
               
               
               Cow position:chr20:30461846-30462055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):47, 35

               
               
               Conread position:874-1089
               
               
               Cow position:chr20:6550957-6550741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:162
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):183, 0

               
               
               Conread position:874-1112
               
               
               Cow position:chr20:32351643-32351881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:176
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):183, 159

               
               
               Conread position:877-1089
               
               
               Cow position:chr20:30479153-30479365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:161
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):177, 95

               
               
               Conread position:885-1089
               
               
               Cow position:chr20:14745665-14745869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:160
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):169, 7

               
               
               Conread position:885-1089
               
               
               Cow position:chr20:29371366-29371164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):169, 61

               
               
               Conread position:894-1084
               
               
               Cow position:chr20:14211317-14211126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):154, 161

               
               
               Conread position:894-1089
               
               
               Cow position:chr20:13304237-13304041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):160, 0

               
               
               Conread position:897-1034
               
               
               Cow position:chr20:3468421-3468559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):19, 14

               
               
               Conread position:901-1089
               
               
               Cow position:chr20:31157668-31157857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):153, 0

               
               
               Conread position:901-1089
               
               
               Cow position:chr20:32639077-32639267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:145
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:901-1089
               
               
               Cow position:chr20:38000558-38000747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):156, 0

               
               
               Conread position:910-1084
               
               
               Cow position:chr20:22185935-22185760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):5, 21

               
               
               Conread position:914-1089
               
               
               Cow position:chr20:11516958-11516784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):139, 162

               
               
               Conread position:914-1089
               
               
               Cow position:chr20:37154886-37154710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:136
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):140, 0

               
               
               Conread position:916-1084
               
               
               Cow position:chr20:9007713-9007544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):137, 77

               
               
               Conread position:918-1089
               
               
               Cow position:chr20:41111341-41111164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):25, 134

               
               
               Conread position:920-1107
               
               
               Cow position:chr20:9535992-9536177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):124, 130

               
               
               Conread position:927-1056
               
               
               Cow position:chr20:17667628-17667757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:97
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:927-1084
               
               
               Cow position:chr20:2682326-2682483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):15, 124

               
               
               Conread position:928-1045
               
               
               Cow position:chr20:5959915-5959798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:95
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:931-1089
               
               
               Cow position:chr20:35037065-35037224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:937-1089
               
               
               Cow position:chr20:13661241-13661088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:116
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:938-1108
               
               
               Cow position:chr20:29806835-29806665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:124
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):119, 127

               
               
               Conread position:942-1077
               
               
               Cow position:chr20:12177381-12177245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:111
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:942-1094
               
               
               Cow position:chr20:9708021-9707869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:116
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):111, 150

               
               
               Conread position:944-1089
               
               
               Cow position:chr20:26053242-26053096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:947-1089
               
               
               Cow position:chr20:9222966-9223109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:958-1108
               
               
               Cow position:chr20:6054230-6054080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:112
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):96, 134

               
               
               Conread position:964-1089
               
               
               Cow position:chr20:26737908-26738034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:102
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:966-1089
               
               
               Cow position:chr20:8786425-8786549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:98
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:974-1088
               
               
               Cow position:chr20:4204795-4204910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:94
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:781-1089
               
               
               Cow position:chr21:47972079-47971780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):258, 75

               
               
               Conread position:782-954
               
               
               Cow position:chr21:4283470-4283300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:782-1016
               
               
               Cow position:chr21:38241849-38241621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:782-1084
               
               
               Cow position:chr21:21291427-21291122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:211
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):28, 33

               
               
               Conread position:782-1084
               
               
               Cow position:chr21:27125658-27125356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 236

               
               
               Conread position:782-1088
               
               
               Cow position:chr21:25814334-25814029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:211
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):107, 151

               
               
               Conread position:782-1089
               
               
               Cow position:chr21:44762-45070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 32

               
               
               Conread position:782-1089
               
               
               Cow position:chr21:20772907-20773208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:201
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):165, 32

               
               
               Conread position:782-1089
               
               
               Cow position:chr21:22943878-22944178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:216
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):139, 84

               
               
               Conread position:782-1089
               
               
               Cow position:chr21:25521269-25520964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):257, 131

               
               
               Conread position:782-1089
               
               
               Cow position:chr21:27066540-27066232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):138, 150

               
               
               Conread position:782-1089
               
               
               Cow position:chr21:30162146-30161845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:782-1089
               
               
               Cow position:chr21:48292289-48291984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):272, 92

               
               
               Conread position:782-1108
               
               
               Cow position:chr21:9895425-9895748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):272, 85

               
               
               Conread position:783-905
               
               
               Cow position:chr21:23340617-23340495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:97
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-908
               
               
               Cow position:chr21:13010834-13010959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:98
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-908
               
               
               Cow position:chr21:27625267-27625142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-908
               
               
               Cow position:chr21:47977070-47977195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:97
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-921
               
               
               Cow position:chr21:2555540-2555403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:110
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):135, 0

               
               
               Conread position:783-954
               
               
               Cow position:chr21:34657019-34657191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:135
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:783-957
               
               
               Cow position:chr21:3923326-3923499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:97
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:783-959
               
               
               Cow position:chr21:37151381-37151556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:134
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:783-968
               
               
               Cow position:chr21:3587010-3586825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-974
               
               
               Cow position:chr21:30777099-30777290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-999
               
               
               Cow position:chr21:12325141-12325352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):179, 0

               
               
               Conread position:783-1004
               
               
               Cow position:chr21:27522836-27522621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:783-1031
               
               
               Cow position:chr21:1285195-1284950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:184
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):154, 0

               
               
               Conread position:783-1031
               
               
               Cow position:chr21:24298144-24297899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:181
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:783-1056
               
               
               Cow position:chr21:4567051-4567309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):74, 124

               
               
               Conread position:783-1068
               
               
               Cow position:chr21:33358196-33357928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:198
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:783-1068
               
               
               Cow position:chr21:35390087-35389805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):84, 71

               
               
               Conread position:783-1069
               
               
               Cow position:chr21:44862506-44862218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 55

               
               
               Conread position:783-1076
               
               
               Cow position:chr21:24827072-24826779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 87

               
               
               Conread position:783-1077
               
               
               Cow position:chr21:1766458-1766164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:208
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):62, 41

               
               
               Conread position:783-1077
               
               
               Cow position:chr21:7048122-7047824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):221, 0

               
               
               Conread position:783-1077
               
               
               Cow position:chr21:30858028-30858318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):250, 88

               
               
               Conread position:783-1077
               
               
               Cow position:chr21:46975024-46974739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:207
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):271, 61

               
               
               Conread position:783-1080
               
               
               Cow position:chr21:5010411-5010110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):138, 0

               
               
               Conread position:783-1083
               
               
               Cow position:chr21:1686116-1685823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:203
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):36, 43

               
               
               Conread position:783-1083
               
               
               Cow position:chr21:4813278-4812976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:783-1084
               
               
               Cow position:chr21:2768778-2768481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 55

               
               
               Conread position:783-1084
               
               
               Cow position:chr21:31252059-31252352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):122, 132

               
               
               Conread position:783-1084
               
               
               Cow position:chr21:45790174-45790471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):136, 104

               
               
               Conread position:783-1088
               
               
               Cow position:chr21:23501598-23501309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):138, 91

               
               
               Conread position:783-1088
               
               
               Cow position:chr21:36376050-36376356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr21:149210-149514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 72

               
               
               Conread position:783-1089
               
               
               Cow position:chr21:1195599-1195905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 259

               
               
               Conread position:783-1089
               
               
               Cow position:chr21:2523984-2524289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:211
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):138, 20

               
               
               Conread position:783-1089
               
               
               Cow position:chr21:2878775-2878470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 235

               
               
               Conread position:783-1089
               
               
               Cow position:chr21:3781837-3782140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 83

               
               
               Conread position:783-1089
               
               
               Cow position:chr21:4733469-4733164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:225
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):10, 18

               
               
               Conread position:783-1089
               
               
               Cow position:chr21:4898901-4898597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 127

               
               
               Conread position:783-1089
               
               
               Cow position:chr21:5020206-5020513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr21:5642776-5642469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr21:6864492-6864193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:220
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):11, 166

               
               
               Conread position:783-1089
               
               
               Cow position:chr21:10570347-10570654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):272, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr21:10853326-10853632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 22

               
               
               Conread position:783-1089
               
               
               Cow position:chr21:11405820-11405513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr21:11509001-11509308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr21:12152890-12153190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr21:13112330-13112026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 74

               
               
               Conread position:783-1089
               
               
               Cow position:chr21:13162498-13162801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):141, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr21:17143740-17144055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 207

               
               
               Conread position:783-1089
               
               
               Cow position:chr21:23549193-23548892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):198, 127

               
               
               Conread position:783-1089
               
               
               Cow position:chr21:24886716-24887017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr21:26400704-26400397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr21:26757669-26757356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):221, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr21:27148491-27148185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 291

               
               
               Conread position:783-1089
               
               
               Cow position:chr21:27608640-27608333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr21:27620436-27620133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 108

               
               
               Conread position:783-1089
               
               
               Cow position:chr21:28915910-28915608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):136, 223

               
               
               Conread position:783-1089
               
               
               Cow position:chr21:30056644-30056337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr21:30193500-30193193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):138, 49

               
               
               Conread position:783-1089
               
               
               Cow position:chr21:30564814-30565121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr21:30654635-30654936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):266, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr21:31513208-31512903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 140

               
               
               Conread position:783-1089
               
               
               Cow position:chr21:33256616-33256923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 18

               
               
               Conread position:783-1089
               
               
               Cow position:chr21:33317306-33316999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr21:33998461-33998150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):237, 27

               
               
               Conread position:783-1089
               
               
               Cow position:chr21:34181037-34180730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):270, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr21:34823236-34823543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr21:35024423-35024730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr21:37374275-37374578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 18

               
               
               Conread position:783-1089
               
               
               Cow position:chr21:38907246-38907549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):233, 116

               
               
               Conread position:783-1089
               
               
               Cow position:chr21:39428462-39428769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr21:39470705-39470397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr21:41796660-41796354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 74

               
               
               Conread position:783-1089
               
               
               Cow position:chr21:42916854-42917160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 192

               
               
               Conread position:783-1089
               
               
               Cow position:chr21:44762901-44762594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr21:47648400-47648707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):177, 148

               
               
               Conread position:783-1089
               
               
               Cow position:chr21:48274137-48273830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr21:48530229-48530535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 20

               
               
               Conread position:783-1090
               
               
               Cow position:chr21:19351801-19351493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 18

               
               
               Conread position:783-1090
               
               
               Cow position:chr21:30966883-30966575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1093
               
               
               Cow position:chr21:38026435-38026740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):273, 74

               
               
               Conread position:783-1095
               
               
               Cow position:chr21:30596028-30595718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 18

               
               
               Conread position:783-1108
               
               
               Cow position:chr21:2419263-2419583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:783-1108
               
               
               Cow position:chr21:26634167-26633843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 172

               
               
               Conread position:783-1108
               
               
               Cow position:chr21:26699606-26699280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):174, 130

               
               
               Conread position:783-1108
               
               
               Cow position:chr21:27343339-27343012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):196, 214

               
               
               Conread position:783-1108
               
               
               Cow position:chr21:33420916-33420582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:228
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):178, 0

               
               
               Conread position:783-1108
               
               
               Cow position:chr21:34255518-34255192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):222, 44

               
               
               Conread position:783-1137
               
               
               Cow position:chr21:24949175-24949523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:240
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):275, 185

               
               
               Conread position:784-1047
               
               
               Cow position:chr21:28025978-28026239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:189
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:784-1056
               
               
               Cow position:chr21:49091400-49091125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 224

               
               
               Conread position:784-1087
               
               
               Cow position:chr21:12803023-12802734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):270, 16

               
               
               Conread position:784-1087
               
               
               Cow position:chr21:47361107-47360804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):268, 176

               
               
               Conread position:784-1089
               
               
               Cow position:chr21:16899352-16899662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:217
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):66, 115

               
               
               Conread position:784-1089
               
               
               Cow position:chr21:22463252-22463558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):269, 0

               
               
               Conread position:784-1089
               
               
               Cow position:chr21:24083294-24082992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):75, 64

               
               
               Conread position:784-1095
               
               
               Cow position:chr21:5630940-5630646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):270, 85

               
               
               Conread position:785-940
               
               
               Cow position:chr21:28988118-28988271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:125
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):125, 0

               
               
               Conread position:785-1031
               
               
               Cow position:chr21:17060859-17060620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:176
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):184, 103

               
               
               Conread position:785-1036
               
               
               Cow position:chr21:36977849-36977601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 0

               
               
               Conread position:785-1065
               
               
               Cow position:chr21:28056374-28056655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):45, 56

               
               
               Conread position:785-1076
               
               
               Cow position:chr21:25189706-25190004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:785-1080
               
               
               Cow position:chr21:28729698-28729995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):45, 56

               
               
               Conread position:785-1084
               
               
               Cow position:chr21:28258735-28259032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):272, 62

               
               
               Conread position:785-1089
               
               
               Cow position:chr21:2513912-2514218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:785-1089
               
               
               Cow position:chr21:33307045-33307333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:216
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):131, 82

               
               
               Conread position:785-1092
               
               
               Cow position:chr21:22750389-22750085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):244, 53

               
               
               Conread position:785-1106
               
               
               Cow position:chr21:3804718-3804396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):269, 315

               
               
               Conread position:785-1108
               
               
               Cow position:chr21:18284869-18285192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:233
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):79, 147

               
               
               Conread position:785-1108
               
               
               Cow position:chr21:22854985-22855299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):269, 11

               
               
               Conread position:785-1108
               
               
               Cow position:chr21:47944016-47944345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 313

               
               
               Conread position:785-1118
               
               
               Cow position:chr21:2538083-2537761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:215
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):268, 49

               
               
               Conread position:785-1118
               
               
               Cow position:chr21:4560006-4559674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):233, 177

               
               
               Conread position:786-1076
               
               
               Cow position:chr21:14726759-14727045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 121

               
               
               Conread position:786-1084
               
               
               Cow position:chr21:35576539-35576242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):76, 55

               
               
               Conread position:786-1089
               
               
               Cow position:chr21:37323736-37323433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:214
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):163, 252

               
               
               Conread position:786-1118
               
               
               Cow position:chr21:29212596-29212925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:231
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):76, 226

               
               
               Conread position:787-1089
               
               
               Cow position:chr21:20578320-20578022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):259, 88

               
               
               Conread position:789-1002
               
               
               Cow position:chr21:30882115-30882325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):159, 8

               
               
               Conread position:789-1085
               
               
               Cow position:chr21:23784317-23784025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:210
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):164, 68

               
               
               Conread position:790-1108
               
               
               Cow position:chr21:33710432-33710114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):264, 302

               
               
               Conread position:795-1056
               
               
               Cow position:chr21:7155468-7155732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):67, 94

               
               
               Conread position:795-1089
               
               
               Cow position:chr21:36535136-36534841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):262, 0

               
               
               Conread position:795-1107
               
               
               Cow position:chr21:32203313-32203625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:215
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):72, 236

               
               
               Conread position:796-1084
               
               
               Cow position:chr21:40082611-40082900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):165, 7

               
               
               Conread position:797-1086
               
               
               Cow position:chr21:49647889-49647600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:209
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):211, 162

               
               
               Conread position:800-1106
               
               
               Cow position:chr21:13314533-13314834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):138, 0

               
               
               Conread position:801-1089
               
               
               Cow position:chr21:33984196-33983908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):252, 188

               
               
               Conread position:802-1070
               
               
               Cow position:chr21:4079122-4079391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):221, 0

               
               
               Conread position:802-1084
               
               
               Cow position:chr21:6966393-6966110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):252, 0

               
               
               Conread position:802-1084
               
               
               Cow position:chr21:21918574-21918854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):235, 101

               
               
               Conread position:802-1089
               
               
               Cow position:chr21:27287061-27287346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):255, 193

               
               
               Conread position:802-1089
               
               
               Cow position:chr21:27429036-27428749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):177, 43

               
               
               Conread position:802-1108
               
               
               Cow position:chr21:3046413-3046724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):70, 21

               
               
               Conread position:803-1052
               
               
               Cow position:chr21:45640230-45639983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):229, 85

               
               
               Conread position:803-1076
               
               
               Cow position:chr21:37612687-37612957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):7, 12

               
               
               Conread position:803-1084
               
               
               Cow position:chr21:21623360-21623639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:179
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:803-1089
               
               
               Cow position:chr21:6622905-6623181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:206
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):98, 136

               
               
               Conread position:804-1084
               
               
               Cow position:chr21:21171244-21170963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 66

               
               
               Conread position:805-1076
               
               
               Cow position:chr21:26830367-26830626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:183
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):249, 108

               
               
               Conread position:805-1089
               
               
               Cow position:chr21:12099617-12099901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):228, 52

               
               
               Conread position:805-1112
               
               
               Cow position:chr21:14122378-14122072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):45, 85

               
               
               Conread position:808-1061
               
               
               Cow position:chr21:3252702-3252964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:809-1083
               
               
               Cow position:chr21:25156377-25156661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:199
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):100, 10

               
               
               Conread position:810-927
               
               
               Cow position:chr21:80737-80854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:93
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:812-1067
               
               
               Cow position:chr21:28811717-28811473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):234, 26

               
               
               Conread position:813-1084
               
               
               Cow position:chr21:10042455-10042726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):106, 74

               
               
               Conread position:813-1108
               
               
               Cow position:chr21:30650080-30649788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:194
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):202, 69

               
               
               Conread position:814-1085
               
               
               Cow position:chr21:39796588-39796860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:181
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):147, 40

               
               
               Conread position:814-1106
               
               
               Cow position:chr21:44262299-44262587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:199
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):132, 12

               
               
               Conread position:814-1107
               
               
               Cow position:chr21:18792351-18792054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:212
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):232, 53

               
               
               Conread position:815-1074
               
               
               Cow position:chr21:14984426-14984170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:180
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):145, 23

               
               
               Conread position:817-1083
               
               
               Cow position:chr21:13299916-13300190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 229

               
               
               Conread position:817-1089
               
               
               Cow position:chr21:32396926-32396657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):236, 201

               
               
               Conread position:818-1108
               
               
               Cow position:chr21:32895124-32894835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:186
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):231, 30

               
               
               Conread position:819-1064
               
               
               Cow position:chr21:13198894-13199142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):102, 29

               
               
               Conread position:820-1077
               
               
               Cow position:chr21:42815-43071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:192
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):57, 18

               
               
               Conread position:820-1084
               
               
               Cow position:chr21:1077994-1078260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):213, 205

               
               
               Conread position:820-1089
               
               
               Cow position:chr21:43292222-43292490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):53, 97

               
               
               Conread position:822-1081
               
               
               Cow position:chr21:4738744-4738998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:181
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):130, 42

               
               
               Conread position:822-1089
               
               
               Cow position:chr21:4721758-4722024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:194
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):232, 170

               
               
               Conread position:824-1092
               
               
               Cow position:chr21:4266432-4266164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:198
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):168, 156

               
               
               Conread position:825-1108
               
               
               Cow position:chr21:21217339-21217064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:826-1089
               
               
               Cow position:chr21:37923290-37923554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):228, 0

               
               
               Conread position:829-1089
               
               
               Cow position:chr21:40268304-40268043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):228, 0

               
               
               Conread position:833-1068
               
               
               Cow position:chr21:436507-436745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):90, 100

               
               
               Conread position:834-1084
               
               
               Cow position:chr21:44805458-44805200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):113, 86

               
               
               Conread position:835-1089
               
               
               Cow position:chr21:4036142-4035895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:185
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):59, 7

               
               
               Conread position:835-1089
               
               
               Cow position:chr21:7062490-7062235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):219, 0

               
               
               Conread position:837-1084
               
               
               Cow position:chr21:33728227-33728470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):217, 57

               
               
               Conread position:838-1049
               
               
               Cow position:chr21:16277393-16277601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):29, 36

               
               
               Conread position:838-1089
               
               
               Cow position:chr21:48235182-48234936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:189
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):215, 74

               
               
               Conread position:839-1108
               
               
               Cow position:chr21:22719979-22719711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:191
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):215, 130

               
               
               Conread position:844-1050
               
               
               Cow position:chr21:39060485-39060280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:157
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:844-1089
               
               
               Cow position:chr21:16890721-16890475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:184
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):202, 211

               
               
               Conread position:844-1089
               
               
               Cow position:chr21:25604357-25604116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:161
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:848-1089
               
               
               Cow position:chr21:2665037-2664798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:186
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):209, 136

               
               
               Conread position:853-1092
               
               
               Cow position:chr21:30297608-30297848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:185
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):201, 0

               
               
               Conread position:856-1084
               
               
               Cow position:chr21:27262830-27263052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:166
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):198, 38

               
               
               Conread position:857-1083
               
               
               Cow position:chr21:47428477-47428705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):197, 0

               
               
               Conread position:857-1084
               
               
               Cow position:chr21:32300410-32300639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:183
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 200

               
               
               Conread position:857-1089
               
               
               Cow position:chr21:5595943-5596169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):20, 78

               
               
               Conread position:860-1077
               
               
               Cow position:chr21:46357596-46357381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:146
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):194, 28

               
               
               Conread position:860-1127
               
               
               Cow position:chr21:4586541-4586277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:193
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):194, 83

               
               
               Conread position:862-1089
               
               
               Cow position:chr21:449308-449535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:169
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):191, 75

               
               
               Conread position:866-1089
               
               
               Cow position:chr21:25475258-25475480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):187, 19

               
               
               Conread position:876-1067
               
               
               Cow position:chr21:26615718-26615531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):159, 105

               
               
               Conread position:880-1084
               
               
               Cow position:chr21:25472356-25472562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:164
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):163, 0

               
               
               Conread position:880-1089
               
               
               Cow position:chr21:4097735-4097942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):174, 23

               
               
               Conread position:880-1089
               
               
               Cow position:chr21:32237496-32237706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:161
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):175, 0

               
               
               Conread position:881-1076
               
               
               Cow position:chr21:28476648-28476453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):173, 86

               
               
               Conread position:883-1060
               
               
               Cow position:chr21:34142543-34142367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):171, 146

               
               
               Conread position:883-1089
               
               
               Cow position:chr21:15274505-15274709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):170, 90

               
               
               Conread position:885-1089
               
               
               Cow position:chr21:14533775-14533980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:160
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):169, 0

               
               
               Conread position:885-1089
               
               
               Cow position:chr21:31275509-31275711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):152, 0

               
               
               Conread position:889-1083
               
               
               Cow position:chr21:581201-581011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:138
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):143, 0

               
               
               Conread position:889-1089
               
               
               Cow position:chr21:48261984-48262183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:162
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):165, 53

               
               
               Conread position:896-1089
               
               
               Cow position:chr21:18851538-18851342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:896-1092
               
               
               Cow position:chr21:37298333-37298522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:142
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):179, 97

               
               
               Conread position:901-1077
               
               
               Cow position:chr21:23802252-23802076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):123, 61

               
               
               Conread position:914-1089
               
               
               Cow position:chr21:18824481-18824303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:914-1089
               
               
               Cow position:chr21:18829902-18829724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:914-1089
               
               
               Cow position:chr21:18837456-18837279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:127
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:914-1089
               
               
               Cow position:chr21:39417268-39417444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):140, 0

               
               
               Conread position:915-1089
               
               
               Cow position:chr21:18847144-18846967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:920-1058
               
               
               Cow position:chr21:470215-470352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:922-1089
               
               
               Cow position:chr21:28908941-28908773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):133, 0

               
               
               Conread position:927-1067
               
               
               Cow position:chr21:44218879-44219024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:110
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:927-1089
               
               
               Cow position:chr21:19098654-19098817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):131, 0

               
               
               Conread position:927-1089
               
               
               Cow position:chr21:42460848-42460690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:121
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):121, 35

               
               
               Conread position:928-1089
               
               
               Cow position:chr21:34900469-34900307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:130
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:928-1089
               
               
               Cow position:chr21:43404232-43404070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):129, 0

               
               
               Conread position:928-1089
               
               
               Cow position:chr21:47977472-47977634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:129
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:929-1108
               
               
               Cow position:chr21:15546476-15546302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):129, 0

               
               
               Conread position:931-1089
               
               
               Cow position:chr21:49655975-49655816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:933-1140
               
               
               Cow position:chr21:2905581-2905367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):10, 167

               
               
               Conread position:935-1090
               
               
               Cow position:chr21:38450772-38450613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:942-1089
               
               
               Cow position:chr21:25597892-25598040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:942-1108
               
               
               Cow position:chr21:36506619-36506452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:949-1077
               
               
               Cow position:chr21:38866386-38866257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:103
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:957-1089
               
               
               Cow position:chr21:26874827-26874959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:105
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):97, 24

               
               
               Conread position:962-1077
               
               
               Cow position:chr21:4541996-4541880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:93
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:969-1104
               
               
               Cow position:chr21:9711660-9711523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):85, 129

               
               
               Conread position:766-1089
               
               
               Cow position:chr22:25336021-25336345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):288, 0

               
               
               Conread position:780-1010
               
               
               Cow position:chr22:44516336-44516107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:161
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:780-1089
               
               
               Cow position:chr22:6339543-6339848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):277, 63

               
               
               Conread position:780-1089
               
               
               Cow position:chr22:31110302-31110618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):30, 11

               
               
               Conread position:780-1108
               
               
               Cow position:chr22:11988822-11988493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):278, 0

               
               
               Conread position:782-995
               
               
               Cow position:chr22:25201033-25201247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:782-1004
               
               
               Cow position:chr22:36504144-36503930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):168, 0

               
               
               Conread position:782-1008
               
               
               Cow position:chr22:34883590-34883819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:156
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):84, 138

               
               
               Conread position:782-1016
               
               
               Cow position:chr22:41034608-41034842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):91, 71

               
               
               Conread position:782-1066
               
               
               Cow position:chr22:5931196-5930916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:170
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:782-1068
               
               
               Cow position:chr22:32997562-32997857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:206
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):56, 110

               
               
               Conread position:782-1076
               
               
               Cow position:chr22:17325596-17325313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:222
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):183, 110

               
               
               Conread position:782-1082
               
               
               Cow position:chr22:21957055-21957351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):272, 88

               
               
               Conread position:782-1084
               
               
               Cow position:chr22:14156071-14155768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:209
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):175, 86

               
               
               Conread position:782-1089
               
               
               Cow position:chr22:557816-557508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):275, 0

               
               
               Conread position:782-1089
               
               
               Cow position:chr22:12728775-12728467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):272, 0

               
               
               Conread position:782-1089
               
               
               Cow position:chr22:12869568-12869262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):233, 95

               
               
               Conread position:782-1089
               
               
               Cow position:chr22:36356950-36357251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:215
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):139, 102

               
               
               Conread position:782-1108
               
               
               Cow position:chr22:24817877-24817550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 295

               
               
               Conread position:782-1108
               
               
               Cow position:chr22:41169782-41170107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:215
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):272, 243

               
               
               Conread position:782-1113
               
               
               Cow position:chr22:39473730-39473400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):307, 254

               
               
               Conread position:783-903
               
               
               Cow position:chr22:11609532-11609652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:99
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-908
               
               
               Cow position:chr22:8299119-8299244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-908
               
               
               Cow position:chr22:22934662-22934787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:99
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-916
               
               
               Cow position:chr22:17782183-17782052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:105
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):127, 0

               
               
               Conread position:783-975
               
               
               Cow position:chr22:6947167-6947359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):27, 32

               
               
               Conread position:783-986
               
               
               Cow position:chr22:7100889-7100698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):80, 102

               
               
               Conread position:783-987
               
               
               Cow position:chr22:20237945-20237741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:157
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-998
               
               
               Cow position:chr22:34749453-34749659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:783-999
               
               
               Cow position:chr22:44100452-44100236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:170
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-1016
               
               
               Cow position:chr22:28556581-28556814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-1035
               
               
               Cow position:chr22:10549620-10549871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:783-1035
               
               
               Cow position:chr22:16144313-16144565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-1048
               
               
               Cow position:chr22:8486986-8486721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-1048
               
               
               Cow position:chr22:38552939-38553194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:191
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):205, 88

               
               
               Conread position:783-1049
               
               
               Cow position:chr22:15921142-15920880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:172
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):70, 149

               
               
               Conread position:783-1056
               
               
               Cow position:chr22:34605100-34605366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:189
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:783-1057
               
               
               Cow position:chr22:36565257-36564984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:198
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):170, 41

               
               
               Conread position:783-1060
               
               
               Cow position:chr22:1280752-1280479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:199
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):269, 121

               
               
               Conread position:783-1067
               
               
               Cow position:chr22:36541389-36541105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 137

               
               
               Conread position:783-1067
               
               
               Cow position:chr22:46578824-46578544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:205
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):104, 126

               
               
               Conread position:783-1068
               
               
               Cow position:chr22:4227352-4227074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):81, 124

               
               
               Conread position:783-1069
               
               
               Cow position:chr22:4291585-4291855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:194
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):271, 27

               
               
               Conread position:783-1069
               
               
               Cow position:chr22:10601758-10602029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:208
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):271, 16

               
               
               Conread position:783-1069
               
               
               Cow position:chr22:46582011-46581721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 47

               
               
               Conread position:783-1073
               
               
               Cow position:chr22:46524557-46524849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:783-1074
               
               
               Cow position:chr22:518489-518199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 121

               
               
               Conread position:783-1075
               
               
               Cow position:chr22:45014139-45013845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 241

               
               
               Conread position:783-1076
               
               
               Cow position:chr22:530009-529722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:201
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):138, 40

               
               
               Conread position:783-1076
               
               
               Cow position:chr22:30067612-30067330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):270, 17

               
               
               Conread position:783-1077
               
               
               Cow position:chr22:17676602-17676891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):271, 191

               
               
               Conread position:783-1077
               
               
               Cow position:chr22:40829182-40828886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):159, 0

               
               
               Conread position:783-1077
               
               
               Cow position:chr22:44381571-44381276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1078
               
               
               Cow position:chr22:18030143-18030427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 71

               
               
               Conread position:783-1081
               
               
               Cow position:chr22:21756289-21756571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:200
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):287, 59

               
               
               Conread position:783-1083
               
               
               Cow position:chr22:11754743-11754454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):273, 187

               
               
               Conread position:783-1083
               
               
               Cow position:chr22:46586883-46587184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1084
               
               
               Cow position:chr22:3303766-3303473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 127

               
               
               Conread position:783-1084
               
               
               Cow position:chr22:9269088-9269387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 180

               
               
               Conread position:783-1084
               
               
               Cow position:chr22:15013806-15013500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):223, 240

               
               
               Conread position:783-1084
               
               
               Cow position:chr22:15309076-15308774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1084
               
               
               Cow position:chr22:41846684-41846376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 18

               
               
               Conread position:783-1084
               
               
               Cow position:chr22:45289759-45290053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):139, 8

               
               
               Conread position:783-1088
               
               
               Cow position:chr22:41408569-41408279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:214
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):270, 74

               
               
               Conread position:783-1089
               
               
               Cow position:chr22:540022-540328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 283

               
               
               Conread position:783-1089
               
               
               Cow position:chr22:696818-697126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):259, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr22:981178-981485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr22:1026894-1027198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:206
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):47, 76

               
               
               Conread position:783-1089
               
               
               Cow position:chr22:3254733-3254429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):227, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr22:3275470-3275163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr22:3434076-3433769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr22:3489447-3489142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 227

               
               
               Conread position:783-1089
               
               
               Cow position:chr22:3714616-3714309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr22:4944002-4944304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):167, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr22:5014974-5015281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr22:5315128-5315434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 18

               
               
               Conread position:783-1089
               
               
               Cow position:chr22:7155543-7155852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):275, 192

               
               
               Conread position:783-1089
               
               
               Cow position:chr22:7279434-7279738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:217
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):177, 39

               
               
               Conread position:783-1089
               
               
               Cow position:chr22:9371246-9371552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 105

               
               
               Conread position:783-1089
               
               
               Cow position:chr22:9729086-9728779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 21

               
               
               Conread position:783-1089
               
               
               Cow position:chr22:10577601-10577294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr22:11767909-11767611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 126

               
               
               Conread position:783-1089
               
               
               Cow position:chr22:12226007-12225702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 54

               
               
               Conread position:783-1089
               
               
               Cow position:chr22:12969506-12969210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 181

               
               
               Conread position:783-1089
               
               
               Cow position:chr22:13184702-13185002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 127

               
               
               Conread position:783-1089
               
               
               Cow position:chr22:13209273-13209576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:218
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):260, 106

               
               
               Conread position:783-1089
               
               
               Cow position:chr22:13721845-13721537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr22:14629496-14629189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr22:14822767-14822466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):77, 18

               
               
               Conread position:783-1089
               
               
               Cow position:chr22:18603924-18603617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr22:18808342-18808038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 251

               
               
               Conread position:783-1089
               
               
               Cow position:chr22:18812023-18811719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 251

               
               
               Conread position:783-1089
               
               
               Cow position:chr22:19140817-19140511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 210

               
               
               Conread position:783-1089
               
               
               Cow position:chr22:19600914-19600608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):270, 283

               
               
               Conread position:783-1089
               
               
               Cow position:chr22:20570154-20569847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr22:21193315-21193008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr22:21592310-21592617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr22:22106930-22107237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr22:22607044-22607352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr22:23867860-23868167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr22:25725117-25724810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr22:25968763-25968466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 102

               
               
               Conread position:783-1089
               
               
               Cow position:chr22:26105252-26104945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr22:26944322-26944015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr22:27307077-27306770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr22:28713749-28714056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr22:28785007-28785313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 172

               
               
               Conread position:783-1089
               
               
               Cow position:chr22:28997700-28997393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr22:29854738-29855043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 250

               
               
               Conread position:783-1089
               
               
               Cow position:chr22:29956304-29955997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr22:30675840-30675533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr22:31315431-31315737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 193

               
               
               Conread position:783-1089
               
               
               Cow position:chr22:31331985-31331678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr22:31416322-31416633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):74, 40

               
               
               Conread position:783-1089
               
               
               Cow position:chr22:32338210-32338516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr22:35668779-35668470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 30

               
               
               Conread position:783-1089
               
               
               Cow position:chr22:36858649-36858342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 21

               
               
               Conread position:783-1089
               
               
               Cow position:chr22:37290955-37290648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr22:37536412-37536137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):10, 18

               
               
               Conread position:783-1089
               
               
               Cow position:chr22:39465654-39465347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 21

               
               
               Conread position:783-1089
               
               
               Cow position:chr22:39902268-39902575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr22:41928660-41928357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:213
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):62, 51

               
               
               Conread position:783-1089
               
               
               Cow position:chr22:41946820-41946522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):186, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr22:42500475-42500172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):144, 137

               
               
               Conread position:783-1089
               
               
               Cow position:chr22:42994060-42994367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr22:43235724-43236031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):275, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr22:45280836-45281143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr22:45893654-45893961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1091
               
               
               Cow position:chr22:25340043-25340349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 150

               
               
               Conread position:783-1094
               
               
               Cow position:chr22:15857682-15857976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):76, 111

               
               
               Conread position:783-1106
               
               
               Cow position:chr22:13768197-13768516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 95

               
               
               Conread position:783-1108
               
               
               Cow position:chr22:324281-323954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 180

               
               
               Conread position:783-1108
               
               
               Cow position:chr22:8339304-8339630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1108
               
               
               Cow position:chr22:15954109-15953787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):196, 40

               
               
               Conread position:783-1108
               
               
               Cow position:chr22:28129640-28129966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:226
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):81, 56

               
               
               Conread position:783-1108
               
               
               Cow position:chr22:38248059-38247742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):7, 16

               
               
               Conread position:783-1108
               
               
               Cow position:chr22:40373289-40373604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:222
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):227, 9

               
               
               Conread position:783-1108
               
               
               Cow position:chr22:40589277-40589604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):133, 116

               
               
               Conread position:783-1113
               
               
               Cow position:chr22:6498806-6498483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 222

               
               
               Conread position:783-1113
               
               
               Cow position:chr22:11036389-11036705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 67

               
               
               Conread position:783-1113
               
               
               Cow position:chr22:24143576-24143239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):172, 0

               
               
               Conread position:783-1114
               
               
               Cow position:chr22:1267165-1266838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):273, 64

               
               
               Conread position:783-1120
               
               
               Cow position:chr22:532981-533318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):272, 242

               
               
               Conread position:783-1123
               
               
               Cow position:chr22:1483303-1483641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 114

               
               
               Conread position:783-1123
               
               
               Cow position:chr22:2040209-2040554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 304

               
               
               Conread position:783-1138
               
               
               Cow position:chr22:26338203-26338571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:258
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):257, 41

               
               
               Conread position:784-908
               
               
               Cow position:chr22:36543886-36543762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:102
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:784-1004
               
               
               Cow position:chr22:3296864-3296644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:163
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:784-1010
               
               
               Cow position:chr22:3271220-3270994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:171
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):124, 11

               
               
               Conread position:784-1029
               
               
               Cow position:chr22:34596753-34596998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:187
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):167, 63

               
               
               Conread position:784-1069
               
               
               Cow position:chr22:44461271-44461538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:218
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):99, 104

               
               
               Conread position:784-1083
               
               
               Cow position:chr22:6722679-6722385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 86

               
               
               Conread position:784-1089
               
               
               Cow position:chr22:15888702-15889007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 168

               
               
               Conread position:784-1089
               
               
               Cow position:chr22:17994426-17994131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:223
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):85, 25

               
               
               Conread position:784-1089
               
               
               Cow position:chr22:29185232-29184926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 115

               
               
               Conread position:784-1089
               
               
               Cow position:chr22:34932189-34931885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):270, 91

               
               
               Conread position:784-1089
               
               
               Cow position:chr22:36556246-36555954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 63

               
               
               Conread position:784-1089
               
               
               Cow position:chr22:36584739-36584435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):268, 87

               
               
               Conread position:784-1108
               
               
               Cow position:chr22:34614929-34615253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):270, 147

               
               
               Conread position:784-1108
               
               
               Cow position:chr22:46033117-46033439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 163

               
               
               Conread position:785-905
               
               
               Cow position:chr22:8595116-8594996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:95
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:785-938
               
               
               Cow position:chr22:11785177-11785024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:785-1047
               
               
               Cow position:chr22:36186521-36186771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:197
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:785-1048
               
               
               Cow position:chr22:34822260-34821996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):77, 29

               
               
               Conread position:785-1084
               
               
               Cow position:chr22:13775394-13775688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 123

               
               
               Conread position:785-1084
               
               
               Cow position:chr22:14102058-14102354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):56, 235

               
               
               Conread position:785-1084
               
               
               Cow position:chr22:36572641-36572345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):269, 53

               
               
               Conread position:785-1089
               
               
               Cow position:chr22:1518151-1517848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):135, 147

               
               
               Conread position:785-1089
               
               
               Cow position:chr22:10907316-10907011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):269, 0

               
               
               Conread position:785-1089
               
               
               Cow position:chr22:13248717-13249014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 89

               
               
               Conread position:785-1089
               
               
               Cow position:chr22:19822074-19822385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 153

               
               
               Conread position:785-1089
               
               
               Cow position:chr22:33952061-33951758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):272, 225

               
               
               Conread position:785-1089
               
               
               Cow position:chr22:44366321-44366016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):269, 0

               
               
               Conread position:785-1094
               
               
               Cow position:chr22:3806510-3806823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 19

               
               
               Conread position:785-1108
               
               
               Cow position:chr22:22230493-22230818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):269, 0

               
               
               Conread position:786-1108
               
               
               Cow position:chr22:288741-288419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 46

               
               
               Conread position:786-1108
               
               
               Cow position:chr22:32220353-32220673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):267, 108

               
               
               Conread position:787-991
               
               
               Cow position:chr22:21364645-21364442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:157
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:787-1032
               
               
               Cow position:chr22:44494152-44494400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:184
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):100, 67

               
               
               Conread position:787-1089
               
               
               Cow position:chr22:45844788-45845093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):246, 0

               
               
               Conread position:787-1089
               
               
               Cow position:chr22:46569198-46568895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):270, 0

               
               
               Conread position:789-1045
               
               
               Cow position:chr22:4290914-4290659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:177
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:790-1140
               
               
               Cow position:chr22:11260823-11260483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:242
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):182, 90

               
               
               Conread position:793-1089
               
               
               Cow position:chr22:36595604-36595315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):261, 27

               
               
               Conread position:794-949
               
               
               Cow position:chr22:6583052-6583207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):149, 62

               
               
               Conread position:795-1040
               
               
               Cow position:chr22:1311022-1310779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:186
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:795-1077
               
               
               Cow position:chr22:48272110-48271833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):262, 210

               
               
               Conread position:795-1083
               
               
               Cow position:chr22:1863547-1863836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:206
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):126, 92

               
               
               Conread position:795-1084
               
               
               Cow position:chr22:36364775-36365067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):15, 20

               
               
               Conread position:796-1084
               
               
               Cow position:chr22:30917990-30918279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):258, 0

               
               
               Conread position:796-1108
               
               
               Cow position:chr22:40720049-40719752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:209
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):49, 79

               
               
               Conread position:797-1089
               
               
               Cow position:chr22:33799117-33798829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):124, 113

               
               
               Conread position:800-1003
               
               
               Cow position:chr22:23207705-23207505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):163, 0

               
               
               Conread position:802-1031
               
               
               Cow position:chr22:44480425-44480656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):140, 187

               
               
               Conread position:802-1077
               
               
               Cow position:chr22:17923686-17923412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:185
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):31, 42

               
               
               Conread position:802-1082
               
               
               Cow position:chr22:17893645-17893370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):251, 203

               
               
               Conread position:802-1084
               
               
               Cow position:chr22:839768-839484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):134, 128

               
               
               Conread position:802-1089
               
               
               Cow position:chr22:51422-51706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):252, 160

               
               
               Conread position:802-1089
               
               
               Cow position:chr22:6202558-6202272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 95

               
               
               Conread position:802-1089
               
               
               Cow position:chr22:26243293-26243569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):245, 36

               
               
               Conread position:802-1089
               
               
               Cow position:chr22:45353730-45354013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:202
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):151, 134

               
               
               Conread position:802-1106
               
               
               Cow position:chr22:22862497-22862801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):252, 157

               
               
               Conread position:802-1126
               
               
               Cow position:chr22:5058557-5058884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:213
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):8, 13

               
               
               Conread position:802-1140
               
               
               Cow position:chr22:582657-582319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:190
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):151, 129

               
               
               Conread position:803-1084
               
               
               Cow position:chr22:35162748-35162469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:803-1089
               
               
               Cow position:chr22:37270003-37270290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):254, 0

               
               
               Conread position:803-1094
               
               
               Cow position:chr22:35904294-35904013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):190, 0

               
               
               Conread position:804-1008
               
               
               Cow position:chr22:38963411-38963616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):156, 0

               
               
               Conread position:804-1065
               
               
               Cow position:chr22:8118348-8118093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):147, 22

               
               
               Conread position:804-1083
               
               
               Cow position:chr22:8734627-8734344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:207
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):41, 169

               
               
               Conread position:805-994
               
               
               Cow position:chr22:39306547-39306734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:805-1089
               
               
               Cow position:chr22:14536536-14536266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:187
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):245, 69

               
               
               Conread position:805-1089
               
               
               Cow position:chr22:36852924-36852642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:193
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):253, 37

               
               
               Conread position:806-1108
               
               
               Cow position:chr22:27320570-27320863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):252, 48

               
               
               Conread position:807-1010
               
               
               Cow position:chr22:2390626-2390423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:150
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):155, 93

               
               
               Conread position:808-1053
               
               
               Cow position:chr22:30513921-30514164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:179
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:811-1083
               
               
               Cow position:chr22:16103224-16103489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:183
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:811-1108
               
               
               Cow position:chr22:15920914-15920617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:210
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):205, 158

               
               
               Conread position:815-1085
               
               
               Cow position:chr22:30363779-30364052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):51, 183

               
               
               Conread position:817-1083
               
               
               Cow position:chr22:27679769-27680040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:187
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):21, 158

               
               
               Conread position:817-1089
               
               
               Cow position:chr22:12444975-12445248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:193
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):188, 37

               
               
               Conread position:817-1089
               
               
               Cow position:chr22:45470176-45469907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):36, 32

               
               
               Conread position:818-1120
               
               
               Cow position:chr22:13697000-13696697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 286

               
               
               Conread position:819-1083
               
               
               Cow position:chr22:15878086-15877820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:189
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):150, 42

               
               
               Conread position:820-1089
               
               
               Cow position:chr22:13865823-13865558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):218, 59

               
               
               Conread position:823-1089
               
               
               Cow position:chr22:5452579-5452846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):230, 0

               
               
               Conread position:824-1089
               
               
               Cow position:chr22:29397024-29397278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):232, 75

               
               
               Conread position:825-1089
               
               
               Cow position:chr22:35910557-35910294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:193
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):229, 24

               
               
               Conread position:825-1108
               
               
               Cow position:chr22:34607417-34607702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):191, 82

               
               
               Conread position:827-1089
               
               
               Cow position:chr22:26090305-26090042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):227, 0

               
               
               Conread position:832-1084
               
               
               Cow position:chr22:14732099-14731851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):35, 80

               
               
               Conread position:832-1089
               
               
               Cow position:chr22:46021873-46022115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):150, 43

               
               
               Conread position:832-1107
               
               
               Cow position:chr22:14537178-14536914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):191, 67

               
               
               Conread position:834-1089
               
               
               Cow position:chr22:18194633-18194892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:191
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:838-1075
               
               
               Cow position:chr22:1325062-1325298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:169
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):5, 10

               
               
               Conread position:848-1089
               
               
               Cow position:chr22:19048822-19048577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:182
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):203, 54

               
               
               Conread position:854-1077
               
               
               Cow position:chr22:44607458-44607678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:163
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):66, 56

               
               
               Conread position:857-1000
               
               
               Cow position:chr22:5296113-5296255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:109
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:857-1089
               
               
               Cow position:chr22:34759101-34758868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:182
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):197, 155

               
               
               Conread position:857-1089
               
               
               Cow position:chr22:44925366-44925132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:857-1089
               
               
               Cow position:chr22:46440346-46440123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):197, 36

               
               
               Conread position:858-1089
               
               
               Cow position:chr22:10313594-10313821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:181
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:860-1053
               
               
               Cow position:chr22:30089328-30089513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:861-1068
               
               
               Cow position:chr22:46658995-46659197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:156
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:870-1089
               
               
               Cow position:chr22:10549840-10550060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):11, 20

               
               
               Conread position:872-1089
               
               
               Cow position:chr22:34171426-34171644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:164
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):185, 0

               
               
               Conread position:874-1047
               
               
               Cow position:chr22:5624508-5624339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:874-1089
               
               
               Cow position:chr22:18614190-18613974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:165
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):180, 0

               
               
               Conread position:874-1089
               
               
               Cow position:chr22:37812910-37813127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:147
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:877-1089
               
               
               Cow position:chr22:25942224-25942443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:877-1118
               
               
               Cow position:chr22:3011722-3011956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:176
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):180, 10

               
               
               Conread position:879-1089
               
               
               Cow position:chr22:32943431-32943642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:163
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):175, 0

               
               
               Conread position:890-1085
               
               
               Cow position:chr22:5929860-5929665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):31, 88

               
               
               Conread position:892-1089
               
               
               Cow position:chr22:37323273-37323463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):91, 155

               
               
               Conread position:896-1054
               
               
               Cow position:chr22:15048987-15049142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):131, 0

               
               
               Conread position:896-1089
               
               
               Cow position:chr22:32209607-32209805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:901-1108
               
               
               Cow position:chr22:36543467-36543257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:159
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):73, 90

               
               
               Conread position:903-1077
               
               
               Cow position:chr22:11779759-11779585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):151, 13

               
               
               Conread position:914-1089
               
               
               Cow position:chr22:40326313-40326489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):143, 0

               
               
               Conread position:915-1084
               
               
               Cow position:chr22:4567130-4567300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):35, 54

               
               
               Conread position:915-1089
               
               
               Cow position:chr22:15497027-15497200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):138, 123

               
               
               Conread position:920-1064
               
               
               Cow position:chr22:43045714-43045570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:920-1083
               
               
               Cow position:chr22:21144854-21144690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):135, 0

               
               
               Conread position:922-1118
               
               
               Cow position:chr22:17781929-17781727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:924-1089
               
               
               Cow position:chr22:3065766-3065605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):122, 40

               
               
               Conread position:924-1089
               
               
               Cow position:chr22:47979896-47979733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:926-1044
               
               
               Cow position:chr22:36785624-36785506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:94
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:926-1108
               
               
               Cow position:chr22:36784748-36784927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):128, 15

               
               
               Conread position:926-1123
               
               
               Cow position:chr22:31645120-31645318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):128, 0

               
               
               Conread position:927-1089
               
               
               Cow position:chr22:12625526-12625363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):127, 0

               
               
               Conread position:928-1084
               
               
               Cow position:chr22:16202833-16202990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:928-1089
               
               
               Cow position:chr22:8776686-8776524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:934-1089
               
               
               Cow position:chr22:14510479-14510323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:127
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:941-1089
               
               
               Cow position:chr22:33449241-33449091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:942-1089
               
               
               Cow position:chr22:698992-699139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):112, 76

               
               
               Conread position:943-1083
               
               
               Cow position:chr22:10330207-10330348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:109
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):93, 112

               
               
               Conread position:949-1084
               
               
               Cow position:chr22:8881199-8881335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:950-1089
               
               
               Cow position:chr22:26167735-26167594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:956-1089
               
               
               Cow position:chr22:14817578-14817446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):99, 89

               
               
               Conread position:963-1108
               
               
               Cow position:chr22:40385705-40385852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:32-439
               
               
               Cow position:chr23:21004844-21005259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 7

               
               
               Conread position:525-755
               
               
               Cow position:chr23:21005370-21005595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:179
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):15, 43

               
               
               Conread position:777-1122
               
               
               Cow position:chr23:20390140-20389799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):281, 43

               
               
               Conread position:782-1016
               
               
               Cow position:chr23:15504870-15505105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:171
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):80, 33

               
               
               Conread position:782-1026
               
               
               Cow position:chr23:22169770-22170013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:782-1083
               
               
               Cow position:chr23:5624693-5624390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):275, 0

               
               
               Conread position:782-1084
               
               
               Cow position:chr23:2039930-2040243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):84, 233

               
               
               Conread position:782-1089
               
               
               Cow position:chr23:15039429-15039130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):88, 116

               
               
               Conread position:782-1089
               
               
               Cow position:chr23:24119434-24119742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):272, 0

               
               
               Conread position:782-1108
               
               
               Cow position:chr23:20540700-20541027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):272, 0

               
               
               Conread position:783-905
               
               
               Cow position:chr23:3878235-3878113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:97
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-908
               
               
               Cow position:chr23:32493147-32493272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:98
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-938
               
               
               Cow position:chr23:2169217-2169370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:783-945
               
               
               Cow position:chr23:28305446-28305605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:783-949
               
               
               Cow position:chr23:3844157-3843991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-957
               
               
               Cow position:chr23:8290258-8290432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:135
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-958
               
               
               Cow position:chr23:943861-944036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-958
               
               
               Cow position:chr23:36028498-36028323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-973
               
               
               Cow position:chr23:31892920-31893107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:783-985
               
               
               Cow position:chr23:1925520-1925319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:157
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):57, 18

               
               
               Conread position:783-994
               
               
               Cow position:chr23:7042940-7042731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):133, 124

               
               
               Conread position:783-1004
               
               
               Cow position:chr23:4807284-4807503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):102, 9

               
               
               Conread position:783-1016
               
               
               Cow position:chr23:643858-643624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):179, 0

               
               
               Conread position:783-1026
               
               
               Cow position:chr23:5871681-5871440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:189
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):134, 74

               
               
               Conread position:783-1031
               
               
               Cow position:chr23:19317368-19317616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-1032
               
               
               Cow position:chr23:40888321-40888571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:187
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):133, 212

               
               
               Conread position:783-1048
               
               
               Cow position:chr23:4081025-4081290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-1048
               
               
               Cow position:chr23:8705744-8706006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):165, 0

               
               
               Conread position:783-1050
               
               
               Cow position:chr23:670771-671038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-1050
               
               
               Cow position:chr23:19492437-19492706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:783-1056
               
               
               Cow position:chr23:1248647-1248374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-1060
               
               
               Cow position:chr23:16056601-16056864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):35, 111

               
               
               Conread position:783-1068
               
               
               Cow position:chr23:16496390-16496098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 272

               
               
               Conread position:783-1077
               
               
               Cow position:chr23:1338594-1338313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:212
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):271, 42

               
               
               Conread position:783-1077
               
               
               Cow position:chr23:2321061-2320769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):275, 74

               
               
               Conread position:783-1077
               
               
               Cow position:chr23:3709285-3709580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1077
               
               
               Cow position:chr23:21008724-21008429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1079
               
               
               Cow position:chr23:29442215-29441919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 227

               
               
               Conread position:783-1084
               
               
               Cow position:chr23:7370729-7371046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:215
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):62, 50

               
               
               Conread position:783-1088
               
               
               Cow position:chr23:4436513-4436818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 127

               
               
               Conread position:783-1088
               
               
               Cow position:chr23:5396700-5396394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr23:609609-609916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr23:1048993-1048686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr23:1959010-1959314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):148, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr23:2024204-2023897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr23:2368705-2368997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr23:2720336-2720644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):133, 121

               
               
               Conread position:783-1089
               
               
               Cow position:chr23:2737105-2737409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:216
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):77, 59

               
               
               Conread position:783-1089
               
               
               Cow position:chr23:2760779-2761086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 18

               
               
               Conread position:783-1089
               
               
               Cow position:chr23:2791884-2791575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):232, 129

               
               
               Conread position:783-1089
               
               
               Cow position:chr23:3285639-3285946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 18

               
               
               Conread position:783-1089
               
               
               Cow position:chr23:3301736-3302042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr23:3417448-3417141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr23:4265735-4265429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr23:4516421-4516728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr23:4532817-4532510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr23:4891576-4891883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr23:6222730-6223035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 124

               
               
               Conread position:783-1089
               
               
               Cow position:chr23:8100128-8100452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:216
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):62, 22

               
               
               Conread position:783-1089
               
               
               Cow position:chr23:9194013-9193707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):241, 15

               
               
               Conread position:783-1089
               
               
               Cow position:chr23:10679953-10679646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr23:10937422-10937115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr23:11079264-11079571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr23:11343377-11343684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 100

               
               
               Conread position:783-1089
               
               
               Cow position:chr23:11712787-11712480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr23:14216343-14216037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 209

               
               
               Conread position:783-1089
               
               
               Cow position:chr23:14971071-14970764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):270, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr23:15528467-15528774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):136, 146

               
               
               Conread position:783-1089
               
               
               Cow position:chr23:22144428-22144122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 263

               
               
               Conread position:783-1089
               
               
               Cow position:chr23:25351241-25351547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 74

               
               
               Conread position:783-1089
               
               
               Cow position:chr23:26307917-26308222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:207
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):33, 53

               
               
               Conread position:783-1089
               
               
               Cow position:chr23:28084213-28083906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):270, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr23:28987231-28987530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 189

               
               
               Conread position:783-1089
               
               
               Cow position:chr23:29042663-29042970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr23:30166459-30166161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:202
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):33, 52

               
               
               Conread position:783-1089
               
               
               Cow position:chr23:31605308-31605615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr23:31703775-31704082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr23:32008496-32008189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr23:37199634-37199326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):247, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr23:41143321-41143628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1092
               
               
               Cow position:chr23:21773026-21772720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 51

               
               
               Conread position:783-1092
               
               
               Cow position:chr23:24516727-24517024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:209
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:783-1118
               
               
               Cow position:chr23:14265230-14265564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 107

               
               
               Conread position:783-1123
               
               
               Cow position:chr23:14960068-14959730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 127

               
               
               Conread position:783-1124
               
               
               Cow position:chr23:11078168-11078500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):272, 147

               
               
               Conread position:783-1124
               
               
               Cow position:chr23:20153341-20152999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 309

               
               
               Conread position:784-1020
               
               
               Cow position:chr23:17403481-17403710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:181
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):61, 23

               
               
               Conread position:784-1024
               
               
               Cow position:chr23:30239147-30239389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 166

               
               
               Conread position:784-1031
               
               
               Cow position:chr23:25593903-25594152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:784-1089
               
               
               Cow position:chr23:1399327-1399026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):267, 34

               
               
               Conread position:784-1089
               
               
               Cow position:chr23:7359345-7359648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 44

               
               
               Conread position:784-1089
               
               
               Cow position:chr23:28221587-28221888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):272, 12

               
               
               Conread position:784-1089
               
               
               Cow position:chr23:30634713-30634407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):273, 0

               
               
               Conread position:784-1112
               
               
               Cow position:chr23:26839846-26840174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 49

               
               
               Conread position:785-1003
               
               
               Cow position:chr23:5405725-5405942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):125, 65

               
               
               Conread position:785-1003
               
               
               Cow position:chr23:25563318-25563540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):167, 0

               
               
               Conread position:785-1076
               
               
               Cow position:chr23:14790366-14790658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):269, 0

               
               
               Conread position:785-1084
               
               
               Cow position:chr23:2437301-2437002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 229

               
               
               Conread position:785-1087
               
               
               Cow position:chr23:25670874-25670585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 123

               
               
               Conread position:785-1089
               
               
               Cow position:chr23:11781667-11781972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 43

               
               
               Conread position:785-1089
               
               
               Cow position:chr23:31276382-31276686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:216
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):252, 72

               
               
               Conread position:785-1106
               
               
               Cow position:chr23:1326431-1326108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):270, 134

               
               
               Conread position:787-1089
               
               
               Cow position:chr23:27402020-27402324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):140, 0

               
               
               Conread position:788-1087
               
               
               Cow position:chr23:26318177-26318469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):138, 29

               
               
               Conread position:790-1089
               
               
               Cow position:chr23:2368003-2368296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:797-978
               
               
               Cow position:chr23:33434315-33434139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:798-1016
               
               
               Cow position:chr23:17876981-17876763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:154
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):181, 20

               
               
               Conread position:801-1089
               
               
               Cow position:chr23:39744762-39745051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:185
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):253, 0

               
               
               Conread position:802-1075
               
               
               Cow position:chr23:17845897-17846171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):255, 0

               
               
               Conread position:802-1076
               
               
               Cow position:chr23:771592-771317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):252, 0

               
               
               Conread position:802-1083
               
               
               Cow position:chr23:32987211-32986931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:195
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):231, 16

               
               
               Conread position:802-1084
               
               
               Cow position:chr23:11127913-11128201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):177, 0

               
               
               Conread position:802-1084
               
               
               Cow position:chr23:15215934-15215652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):255, 55

               
               
               Conread position:802-1090
               
               
               Cow position:chr23:616366-616081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:203
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):248, 104

               
               
               Conread position:803-1083
               
               
               Cow position:chr23:11814949-11814661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:200
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):59, 172

               
               
               Conread position:803-1089
               
               
               Cow position:chr23:14840270-14839982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):210, 43

               
               
               Conread position:804-1056
               
               
               Cow position:chr23:30211740-30211491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:805-1028
               
               
               Cow position:chr23:38301834-38301618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:157
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):116, 105

               
               
               Conread position:805-1092
               
               
               Cow position:chr23:4799268-4798987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):231, 49

               
               
               Conread position:807-1088
               
               
               Cow position:chr23:5440823-5441104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):247, 8

               
               
               Conread position:813-1068
               
               
               Cow position:chr23:32427867-32427614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):241, 41

               
               
               Conread position:814-1068
               
               
               Cow position:chr23:27146380-27146125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):201, 40

               
               
               Conread position:814-1089
               
               
               Cow position:chr23:11386133-11385859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:188
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):148, 78

               
               
               Conread position:815-1077
               
               
               Cow position:chr23:16611895-16611635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:195
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):202, 13

               
               
               Conread position:817-1084
               
               
               Cow position:chr23:20171283-20171019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:192
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):237, 208

               
               
               Conread position:817-1089
               
               
               Cow position:chr23:13820831-13820562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):174, 127

               
               
               Conread position:821-1089
               
               
               Cow position:chr23:25357264-25357533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:193
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):233, 0

               
               
               Conread position:822-1083
               
               
               Cow position:chr23:2180927-2180664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):232, 0

               
               
               Conread position:823-1085
               
               
               Cow position:chr23:7962227-7961967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):44, 17

               
               
               Conread position:824-1068
               
               
               Cow position:chr23:10131471-10131232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:168
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):206, 45

               
               
               Conread position:826-1052
               
               
               Cow position:chr23:3886653-3886886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):115, 31

               
               
               Conread position:828-1085
               
               
               Cow position:chr23:40372430-40372171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):222, 240

               
               
               Conread position:834-1049
               
               
               Cow position:chr23:39388594-39388809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:834-1089
               
               
               Cow position:chr23:2409281-2409024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):145, 0

               
               
               Conread position:835-1106
               
               
               Cow position:chr23:345523-345251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):219, 0

               
               
               Conread position:844-1084
               
               
               Cow position:chr23:31385936-31385699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:164
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):189, 41

               
               
               Conread position:847-1087
               
               
               Cow position:chr23:21252243-21252479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):106, 63

               
               
               Conread position:850-1089
               
               
               Cow position:chr23:38027998-38027760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):131, 44

               
               
               Conread position:854-1026
               
               
               Cow position:chr23:2722715-2722887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:857-1076
               
               
               Cow position:chr23:13536386-13536605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 213

               
               
               Conread position:857-1089
               
               
               Cow position:chr23:7288590-7288358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:166
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):52, 61

               
               
               Conread position:857-1089
               
               
               Cow position:chr23:26828207-26828440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):200, 0

               
               
               Conread position:857-1089
               
               
               Cow position:chr23:39246791-39247023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):53, 61

               
               
               Conread position:862-1088
               
               
               Cow position:chr23:6666897-6667123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):16, 9

               
               
               Conread position:870-1089
               
               
               Cow position:chr23:29624947-29625161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:172
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):184, 34

               
               
               Conread position:881-1112
               
               
               Cow position:chr23:38583902-38584130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):176, 29

               
               
               Conread position:883-1089
               
               
               Cow position:chr23:16999427-16999631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:151
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):84, 50

               
               
               Conread position:886-1089
               
               
               Cow position:chr23:28915318-28915520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):171, 28

               
               
               Conread position:892-1089
               
               
               Cow position:chr23:4637365-4637168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):30, 40

               
               
               Conread position:894-1089
               
               
               Cow position:chr23:6174013-6173831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:895-1088
               
               
               Cow position:chr23:29460259-29460065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:156
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):159, 0

               
               
               Conread position:900-1089
               
               
               Cow position:chr23:6442022-6441841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):129, 0

               
               
               Conread position:916-1089
               
               
               Cow position:chr23:34346887-34347061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):138, 0

               
               
               Conread position:921-1068
               
               
               Cow position:chr23:23116537-23116685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:111
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):105, 81

               
               
               Conread position:922-1089
               
               
               Cow position:chr23:33817468-33817632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:127
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):132, 46

               
               
               Conread position:923-1089
               
               
               Cow position:chr23:2473287-2473113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:132
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:923-1130
               
               
               Cow position:chr23:10904910-10905115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:145
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):163, 0

               
               
               Conread position:928-1089
               
               
               Cow position:chr23:31772241-31772079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:928-1112
               
               
               Cow position:chr23:954771-954586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:145
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):126, 164

               
               
               Conread position:930-1089
               
               
               Cow position:chr23:21277606-21277447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:121
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):86, 7

               
               
               Conread position:934-1083
               
               
               Cow position:chr23:28305874-28306023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):123, 112

               
               
               Conread position:937-1089
               
               
               Cow position:chr23:11070109-11070264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:942-1089
               
               
               Cow position:chr23:26683981-26684128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):116, 88

               
               
               Conread position:945-1084
               
               
               Cow position:chr23:30623455-30623315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:945-1089
               
               
               Cow position:chr23:38935172-38935027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:947-1089
               
               
               Cow position:chr23:3878098-3877955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:109
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:958-1089
               
               
               Cow position:chr23:27377973-27378107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:103
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:963-1076
               
               
               Cow position:chr23:8290506-8290619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:92
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):91, 42

               
               
               Conread position:965-1089
               
               
               Cow position:chr23:41014991-41015116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:98
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:781-1025
               
               
               Cow position:chr24:32824118-32823879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:185
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:782-908
               
               
               Cow position:chr24:37886072-37886198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:98
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):14, 21

               
               
               Conread position:782-954
               
               
               Cow position:chr24:37433731-37433559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:121
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):91, 86

               
               
               Conread position:782-1034
               
               
               Cow position:chr24:6414815-6415082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:188
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:782-1067
               
               
               Cow position:chr24:38003067-38002786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:203
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):139, 129

               
               
               Conread position:782-1069
               
               
               Cow position:chr24:6440725-6441013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):272, 0

               
               
               Conread position:782-1075
               
               
               Cow position:chr24:32363358-32363068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):187, 30

               
               
               Conread position:782-1078
               
               
               Cow position:chr24:25465766-25465467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:189
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:782-1089
               
               
               Cow position:chr24:1841900-1841592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):272, 0

               
               
               Conread position:782-1089
               
               
               Cow position:chr24:10879523-10879828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):48, 179

               
               
               Conread position:782-1089
               
               
               Cow position:chr24:14914845-14914551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):273, 56

               
               
               Conread position:782-1089
               
               
               Cow position:chr24:17545197-17545505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):275, 0

               
               
               Conread position:782-1089
               
               
               Cow position:chr24:27148082-27148385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):276, 221

               
               
               Conread position:782-1089
               
               
               Cow position:chr24:35824229-35823925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):275, 214

               
               
               Conread position:782-1132
               
               
               Cow position:chr24:29370623-29370271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:237
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):87, 248

               
               
               Conread position:783-908
               
               
               Cow position:chr24:13235205-13235330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:97
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-940
               
               
               Cow position:chr24:36713206-36713362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:114
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:783-949
               
               
               Cow position:chr24:19885264-19885430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-968
               
               
               Cow position:chr24:17956631-17956444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:112
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:783-977
               
               
               Cow position:chr24:14381316-14381123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):145, 0

               
               
               Conread position:783-985
               
               
               Cow position:chr24:12208754-12208956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-1001
               
               
               Cow position:chr24:38641139-38641356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):138, 82

               
               
               Conread position:783-1002
               
               
               Cow position:chr24:14250867-14250648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:166
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-1004
               
               
               Cow position:chr24:13176985-13176758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):109, 217

               
               
               Conread position:783-1004
               
               
               Cow position:chr24:25439197-25439415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:167
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:783-1016
               
               
               Cow position:chr24:7457155-7457388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:182
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-1035
               
               
               Cow position:chr24:38487379-38487631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):194, 214

               
               
               Conread position:783-1048
               
               
               Cow position:chr24:7064539-7064804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-1060
               
               
               Cow position:chr24:13191141-13191418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):140, 145

               
               
               Conread position:783-1067
               
               
               Cow position:chr24:208031-207748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:783-1069
               
               
               Cow position:chr24:37099791-37100067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):68, 138

               
               
               Conread position:783-1073
               
               
               Cow position:chr24:12942304-12942587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:198
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):214, 121

               
               
               Conread position:783-1076
               
               
               Cow position:chr24:36028540-36028247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 17

               
               
               Conread position:783-1077
               
               
               Cow position:chr24:6021105-6020810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1077
               
               
               Cow position:chr24:14173788-14173496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 61

               
               
               Conread position:783-1077
               
               
               Cow position:chr24:17323670-17323962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):149, 249

               
               
               Conread position:783-1077
               
               
               Cow position:chr24:19688607-19688311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:783-1083
               
               
               Cow position:chr24:12147617-12147312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):196, 0

               
               
               Conread position:783-1084
               
               
               Cow position:chr24:12203537-12203236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:209
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):79, 236

               
               
               Conread position:783-1084
               
               
               Cow position:chr24:14352325-14352627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1084
               
               
               Cow position:chr24:24485219-24484922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 179

               
               
               Conread position:783-1084
               
               
               Cow position:chr24:40121118-40120824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):80, 156

               
               
               Conread position:783-1084
               
               
               Cow position:chr24:44942474-44942770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 100

               
               
               Conread position:783-1089
               
               
               Cow position:chr24:145630-145323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr24:3162443-3162750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr24:6068366-6068058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):152, 92

               
               
               Conread position:783-1089
               
               
               Cow position:chr24:6079399-6079705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 121

               
               
               Conread position:783-1089
               
               
               Cow position:chr24:6326396-6326091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 43

               
               
               Conread position:783-1089
               
               
               Cow position:chr24:6412451-6412758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr24:6963823-6964130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr24:9089111-9088827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr24:9546145-9546452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr24:12119979-12119682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:213
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):266, 117

               
               
               Conread position:783-1089
               
               
               Cow position:chr24:12332734-12332427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:222
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):213, 37

               
               
               Conread position:783-1089
               
               
               Cow position:chr24:12570885-12571191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:212
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):139, 97

               
               
               Conread position:783-1089
               
               
               Cow position:chr24:12578494-12578801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr24:13374540-13374234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):225, 190

               
               
               Conread position:783-1089
               
               
               Cow position:chr24:14147190-14146885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 74

               
               
               Conread position:783-1089
               
               
               Cow position:chr24:14194875-14194569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):275, 292

               
               
               Conread position:783-1089
               
               
               Cow position:chr24:14759867-14760172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 155

               
               
               Conread position:783-1089
               
               
               Cow position:chr24:15296088-15296395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr24:15934906-15935209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):261, 71

               
               
               Conread position:783-1089
               
               
               Cow position:chr24:16081513-16081207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 84

               
               
               Conread position:783-1089
               
               
               Cow position:chr24:16559306-16558999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr24:17189299-17188994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 43

               
               
               Conread position:783-1089
               
               
               Cow position:chr24:18112430-18112735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 189

               
               
               Conread position:783-1089
               
               
               Cow position:chr24:18267518-18267206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):262, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr24:19185128-19185434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 111

               
               
               Conread position:783-1089
               
               
               Cow position:chr24:20284234-20283930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 155

               
               
               Conread position:783-1089
               
               
               Cow position:chr24:20367340-20367646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 235

               
               
               Conread position:783-1089
               
               
               Cow position:chr24:22794532-22794839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr24:22974780-22975088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):177, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr24:27725076-27724763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr24:29084692-29084385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr24:29190262-29190568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 201

               
               
               Conread position:783-1089
               
               
               Cow position:chr24:31068073-31067765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr24:31301678-31301985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):133, 121

               
               
               Conread position:783-1089
               
               
               Cow position:chr24:31842513-31842820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr24:34602175-34602472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):254, 71

               
               
               Conread position:783-1089
               
               
               Cow position:chr24:36721418-36721724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):223, 135

               
               
               Conread position:783-1089
               
               
               Cow position:chr24:40150419-40150107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:227
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):74, 230

               
               
               Conread position:783-1089
               
               
               Cow position:chr24:40467443-40467133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 121

               
               
               Conread position:783-1089
               
               
               Cow position:chr24:40551598-40551905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr24:41005452-41005758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 210

               
               
               Conread position:783-1090
               
               
               Cow position:chr24:14745333-14745645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:220
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):10, 33

               
               
               Conread position:783-1098
               
               
               Cow position:chr24:30767544-30767854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):217, 79

               
               
               Conread position:783-1108
               
               
               Cow position:chr24:6339546-6339873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):233, 0

               
               
               Conread position:783-1108
               
               
               Cow position:chr24:9071868-9071542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):197, 203

               
               
               Conread position:783-1108
               
               
               Cow position:chr24:16646935-16646611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):272, 235

               
               
               Conread position:783-1108
               
               
               Cow position:chr24:31381373-31381698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 135

               
               
               Conread position:783-1108
               
               
               Cow position:chr24:33936902-33937228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):273, 306

               
               
               Conread position:783-1108
               
               
               Cow position:chr24:39501622-39501294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 171

               
               
               Conread position:783-1108
               
               
               Cow position:chr24:43634092-43634413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:227
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):135, 59

               
               
               Conread position:783-1113
               
               
               Cow position:chr24:36556605-36556275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 177

               
               
               Conread position:783-1113
               
               
               Cow position:chr24:41670788-41671118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):232, 165

               
               
               Conread position:783-1118
               
               
               Cow position:chr24:3850568-3850905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1118
               
               
               Cow position:chr24:14376666-14376334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:232
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):178, 59

               
               
               Conread position:783-1125
               
               
               Cow position:chr24:14609871-14609518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 45

               
               
               Conread position:784-1073
               
               
               Cow position:chr24:16562440-16562160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):270, 66

               
               
               Conread position:784-1076
               
               
               Cow position:chr24:29181352-29181633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:784-1089
               
               
               Cow position:chr24:12164841-12165145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):270, 185

               
               
               Conread position:784-1089
               
               
               Cow position:chr24:17764625-17764319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:212
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):272, 0

               
               
               Conread position:784-1089
               
               
               Cow position:chr24:19198930-19199235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:211
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):270, 179

               
               
               Conread position:784-1089
               
               
               Cow position:chr24:24249527-24249222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):277, 284

               
               
               Conread position:784-1108
               
               
               Cow position:chr24:14464222-14463899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):264, 129

               
               
               Conread position:785-958
               
               
               Cow position:chr24:23093073-23092903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:785-965
               
               
               Cow position:chr24:23095811-23095634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:785-982
               
               
               Cow position:chr24:42815326-42815524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:148
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):177, 0

               
               
               Conread position:785-996
               
               
               Cow position:chr24:27299732-27299942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):40, 160

               
               
               Conread position:785-1004
               
               
               Cow position:chr24:17406102-17406316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:785-1016
               
               
               Cow position:chr24:13320195-13319964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:173
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:785-1057
               
               
               Cow position:chr24:17368962-17368693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 179

               
               
               Conread position:785-1077
               
               
               Cow position:chr24:6052060-6052352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):269, 153

               
               
               Conread position:785-1083
               
               
               Cow position:chr24:9549241-9549539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):231, 72

               
               
               Conread position:785-1083
               
               
               Cow position:chr24:14335828-14336142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):59, 133

               
               
               Conread position:785-1084
               
               
               Cow position:chr24:8607304-8607604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):272, 0

               
               
               Conread position:785-1087
               
               
               Cow position:chr24:12698041-12697740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):269, 296

               
               
               Conread position:785-1088
               
               
               Cow position:chr24:28688418-28688709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):261, 23

               
               
               Conread position:785-1089
               
               
               Cow position:chr24:36779246-36779551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:785-1090
               
               
               Cow position:chr24:6543552-6543866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:222
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):183, 138

               
               
               Conread position:785-1108
               
               
               Cow position:chr24:16266435-16266756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 276

               
               
               Conread position:786-1003
               
               
               Cow position:chr24:1295281-1295065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:790-1084
               
               
               Cow position:chr24:14307185-14307477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:196
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:792-1089
               
               
               Cow position:chr24:15371764-15372060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 66

               
               
               Conread position:793-1066
               
               
               Cow position:chr24:41231551-41231826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):200, 232

               
               
               Conread position:795-1089
               
               
               Cow position:chr24:26274629-26274345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:208
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):260, 75

               
               
               Conread position:796-1007
               
               
               Cow position:chr24:16099741-16099951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):108, 72

               
               
               Conread position:796-1050
               
               
               Cow position:chr24:17295575-17295339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:796-1061
               
               
               Cow position:chr24:19467603-19467330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):182, 96

               
               
               Conread position:796-1084
               
               
               Cow position:chr24:25648082-25647794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 249

               
               
               Conread position:796-1089
               
               
               Cow position:chr24:17411396-17411689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:200
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):61, 29

               
               
               Conread position:796-1089
               
               
               Cow position:chr24:41062440-41062733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 187

               
               
               Conread position:796-1139
               
               
               Cow position:chr24:16056867-16056523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:242
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):166, 58

               
               
               Conread position:797-941
               
               
               Cow position:chr24:13299871-13299727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:797-1108
               
               
               Cow position:chr24:36036838-36036527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):260, 60

               
               
               Conread position:800-1106
               
               
               Cow position:chr24:45086522-45086820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:213
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:802-1055
               
               
               Cow position:chr24:16603603-16603357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):128, 0

               
               
               Conread position:802-1069
               
               
               Cow position:chr24:17365985-17365719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):242, 109

               
               
               Conread position:802-1089
               
               
               Cow position:chr24:5863360-5863073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):252, 188

               
               
               Conread position:802-1089
               
               
               Cow position:chr24:7597567-7597279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):252, 0

               
               
               Conread position:802-1089
               
               
               Cow position:chr24:11208615-11208327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):252, 0

               
               
               Conread position:802-1089
               
               
               Cow position:chr24:19674818-19675106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:204
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):162, 85

               
               
               Conread position:802-1125
               
               
               Cow position:chr24:36478805-36478482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:202
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):203, 182

               
               
               Conread position:803-1087
               
               
               Cow position:chr24:4785681-4785970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 170

               
               
               Conread position:803-1087
               
               
               Cow position:chr24:13085486-13085201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):106, 178

               
               
               Conread position:804-1084
               
               
               Cow position:chr24:14866043-14865757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 107

               
               
               Conread position:804-1084
               
               
               Cow position:chr24:14867969-14867683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 107

               
               
               Conread position:805-908
               
               
               Cow position:chr24:6036246-6036143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:104
               
               
               Alignm identity:91
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:805-1066
               
               
               Cow position:chr24:25263904-25264156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):111, 69

               
               
               Conread position:805-1089
               
               
               Cow position:chr24:42938963-42938677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:204
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):16, 28

               
               
               Conread position:809-1035
               
               
               Cow position:chr24:29069025-29068801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:810-1089
               
               
               Cow position:chr24:22287582-22287857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):201, 120

               
               
               Conread position:810-1089
               
               
               Cow position:chr24:31184782-31185057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):9, 41

               
               
               Conread position:813-1083
               
               
               Cow position:chr24:39680510-39680778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):32, 120

               
               
               Conread position:813-1089
               
               
               Cow position:chr24:6542934-6542657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):241, 0

               
               
               Conread position:816-1066
               
               
               Cow position:chr24:37089093-37088855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:177
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):7, 56

               
               
               Conread position:817-1077
               
               
               Cow position:chr24:32361844-32361577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:818-1057
               
               
               Cow position:chr24:6509137-6508906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):129, 75

               
               
               Conread position:818-1089
               
               
               Cow position:chr24:12264780-12264509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:199
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):98, 89

               
               
               Conread position:819-1089
               
               
               Cow position:chr24:25372121-25372383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):235, 34

               
               
               Conread position:821-1067
               
               
               Cow position:chr24:1067405-1067161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:168
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):213, 62

               
               
               Conread position:822-1084
               
               
               Cow position:chr24:12348382-12348118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):152, 0

               
               
               Conread position:824-1088
               
               
               Cow position:chr24:17030981-17030715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):137, 182

               
               
               Conread position:824-1089
               
               
               Cow position:chr24:19643308-19643574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):136, 58

               
               
               Conread position:827-1050
               
               
               Cow position:chr24:40519801-40519579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:163
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):61, 10

               
               
               Conread position:828-1089
               
               
               Cow position:chr24:17998347-17998609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):132, 102

               
               
               Conread position:829-1089
               
               
               Cow position:chr24:32740888-32740629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:189
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):133, 28

               
               
               Conread position:831-1089
               
               
               Cow position:chr24:31766975-31767233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):206, 63

               
               
               Conread position:832-1089
               
               
               Cow position:chr24:36726177-36726436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:184
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:835-1088
               
               
               Cow position:chr24:20508018-20507773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):78, 39

               
               
               Conread position:835-1089
               
               
               Cow position:chr24:12090005-12090260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):144, 19

               
               
               Conread position:838-1087
               
               
               Cow position:chr24:33575291-33575534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:178
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):215, 15

               
               
               Conread position:839-1089
               
               
               Cow position:chr24:32608336-32608591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:190
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):161, 104

               
               
               Conread position:847-1089
               
               
               Cow position:chr24:40271888-40272127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:182
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):206, 56

               
               
               Conread position:853-1087
               
               
               Cow position:chr24:17105832-17105599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:187
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):201, 107

               
               
               Conread position:854-1011
               
               
               Cow position:chr24:35867601-35867444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:112
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:856-1084
               
               
               Cow position:chr24:6524041-6524272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):160, 0

               
               
               Conread position:859-1089
               
               
               Cow position:chr24:7405011-7404780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):195, 0

               
               
               Conread position:859-1106
               
               
               Cow position:chr24:6146348-6146590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:860-1108
               
               
               Cow position:chr24:9390207-9390449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:169
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):193, 51

               
               
               Conread position:861-1084
               
               
               Cow position:chr24:38813695-38813922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):101, 109

               
               
               Conread position:862-1089
               
               
               Cow position:chr24:37222764-37222537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):93, 37

               
               
               Conread position:871-1089
               
               
               Cow position:chr24:7467235-7467015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):183, 89

               
               
               Conread position:874-1089
               
               
               Cow position:chr24:22953626-22953842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:166
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):180, 0

               
               
               Conread position:876-1108
               
               
               Cow position:chr24:34760598-34760827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):18, 78

               
               
               Conread position:878-1089
               
               
               Cow position:chr24:30893785-30893569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):128, 37

               
               
               Conread position:885-1048
               
               
               Cow position:chr24:192420-192583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:885-1089
               
               
               Cow position:chr24:5928854-5929059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):169, 0

               
               
               Conread position:892-1083
               
               
               Cow position:chr24:26388803-26388619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:138
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:900-1089
               
               
               Cow position:chr24:45003516-45003708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:903-1084
               
               
               Cow position:chr24:25698038-25698220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:141
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):151, 0

               
               
               Conread position:917-1089
               
               
               Cow position:chr24:28498027-28497853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:139
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):5, 165

               
               
               Conread position:920-1088
               
               
               Cow position:chr24:33240731-33240562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):134, 0

               
               
               Conread position:920-1089
               
               
               Cow position:chr24:17310323-17310154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:126
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):11, 67

               
               
               Conread position:923-1088
               
               
               Cow position:chr24:45009007-45009172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):42, 123

               
               
               Conread position:928-1088
               
               
               Cow position:chr24:12199248-12199087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):128, 0

               
               
               Conread position:928-1089
               
               
               Cow position:chr24:6036063-6035901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):129, 0

               
               
               Conread position:928-1089
               
               
               Cow position:chr24:13235390-13235549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):126, 40

               
               
               Conread position:930-1108
               
               
               Cow position:chr24:8431492-8431671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:931-1089
               
               
               Cow position:chr24:35067654-35067497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:935-1089
               
               
               Cow position:chr24:3793609-3793762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:941-1089
               
               
               Cow position:chr24:5991052-5990903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:941-1089
               
               
               Cow position:chr24:29179496-29179646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:120
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):106, 27

               
               
               Conread position:945-1076
               
               
               Cow position:chr24:26412187-26412318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):109, 17

               
               
               Conread position:945-1108
               
               
               Cow position:chr24:35568134-35568296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):108, 17

               
               
               Conread position:948-1089
               
               
               Cow position:chr24:13491634-13491776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:952-1108
               
               
               Cow position:chr24:5653569-5653412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:113
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:969-1089
               
               
               Cow position:chr24:17161819-17161698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:98
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:969-1089
               
               
               Cow position:chr24:30681963-30681842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:95
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:970-1089
               
               
               Cow position:chr24:17566012-17566130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:96
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):84, 48

               
               
               Conread position:777-1089
               
               
               Cow position:chr25:26753656-26753343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:202
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):171, 192

               
               
               Conread position:778-1108
               
               
               Cow position:chr25:25731210-25731534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:231
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):269, 13

               
               
               Conread position:782-1048
               
               
               Cow position:chr25:17554802-17554533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):135, 0

               
               
               Conread position:782-1068
               
               
               Cow position:chr25:30326845-30326563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:186
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):274, 42

               
               
               Conread position:782-1073
               
               
               Cow position:chr25:23462052-23462338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):272, 16

               
               
               Conread position:782-1084
               
               
               Cow position:chr25:9395088-9395387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):272, 92

               
               
               Conread position:782-1084
               
               
               Cow position:chr25:21967838-21968152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:207
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):224, 0

               
               
               Conread position:782-1089
               
               
               Cow position:chr25:26754954-26755259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:216
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):139, 125

               
               
               Conread position:783-975
               
               
               Cow position:chr25:39554955-39554766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):173, 145

               
               
               Conread position:783-979
               
               
               Cow position:chr25:12083160-12082970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:783-1004
               
               
               Cow position:chr25:18179692-18179912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:167
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:783-1016
               
               
               Cow position:chr25:24449567-24449336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:173
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):130, 0

               
               
               Conread position:783-1030
               
               
               Cow position:chr25:30341049-30340801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:186
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):125, 25

               
               
               Conread position:783-1034
               
               
               Cow position:chr25:16923463-16923220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:783-1034
               
               
               Cow position:chr25:22150746-22150998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):136, 0

               
               
               Conread position:783-1035
               
               
               Cow position:chr25:33990575-33990326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:783-1056
               
               
               Cow position:chr25:1973009-1972735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:209
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):37, 88

               
               
               Conread position:783-1056
               
               
               Cow position:chr25:34673902-34673628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 18

               
               
               Conread position:783-1060
               
               
               Cow position:chr25:18071907-18072179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:203
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):133, 85

               
               
               Conread position:783-1060
               
               
               Cow position:chr25:29526191-29525913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1060
               
               
               Cow position:chr25:35561827-35561551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:191
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):169, 124

               
               
               Conread position:783-1064
               
               
               Cow position:chr25:34368803-34369084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 229

               
               
               Conread position:783-1064
               
               
               Cow position:chr25:39387306-39387588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):273, 0

               
               
               Conread position:783-1074
               
               
               Cow position:chr25:28421027-28420737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 31

               
               
               Conread position:783-1077
               
               
               Cow position:chr25:36350410-36350705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1084
               
               
               Cow position:chr25:392944-393241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):234, 108

               
               
               Conread position:783-1084
               
               
               Cow position:chr25:18190700-18190401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):142, 102

               
               
               Conread position:783-1084
               
               
               Cow position:chr25:36511980-36512278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:195
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):270, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr25:7223761-7223455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 254

               
               
               Conread position:783-1089
               
               
               Cow position:chr25:10634335-10634029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 131

               
               
               Conread position:783-1089
               
               
               Cow position:chr25:11043293-11043598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 85

               
               
               Conread position:783-1089
               
               
               Cow position:chr25:12939537-12939230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr25:13942058-13941761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:216
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):10, 20

               
               
               Conread position:783-1089
               
               
               Cow position:chr25:13959741-13960044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 196

               
               
               Conread position:783-1089
               
               
               Cow position:chr25:18886797-18886504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 71

               
               
               Conread position:783-1089
               
               
               Cow position:chr25:19337651-19337348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 201

               
               
               Conread position:783-1089
               
               
               Cow position:chr25:22197716-22197409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr25:23740572-23740268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):270, 37

               
               
               Conread position:783-1089
               
               
               Cow position:chr25:24007578-24007885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr25:24655499-24655192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 18

               
               
               Conread position:783-1089
               
               
               Cow position:chr25:26281695-26282002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr25:27019567-27019260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):133, 102

               
               
               Conread position:783-1089
               
               
               Cow position:chr25:28862541-28862849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):196, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr25:32577993-32577685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 97

               
               
               Conread position:783-1089
               
               
               Cow position:chr25:34257436-34257129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr25:34503559-34503245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr25:34509509-34509202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr25:35553354-35553647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 124

               
               
               Conread position:783-1089
               
               
               Cow position:chr25:35568214-35567906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):177, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr25:35571490-35571796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr25:35755573-35755266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr25:40390040-40389756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:204
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr25:41098526-41098214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):255, 0

               
               
               Conread position:783-1092
               
               
               Cow position:chr25:2594448-2594752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 143

               
               
               Conread position:783-1094
               
               
               Cow position:chr25:25480938-25480616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):232, 0

               
               
               Conread position:783-1106
               
               
               Cow position:chr25:26781412-26781089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 310

               
               
               Conread position:783-1108
               
               
               Cow position:chr25:10136494-10136820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):235, 109

               
               
               Conread position:783-1108
               
               
               Cow position:chr25:21949469-21949794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 191

               
               
               Conread position:783-1108
               
               
               Cow position:chr25:25826125-25826444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):259, 36

               
               
               Conread position:783-1108
               
               
               Cow position:chr25:33838051-33838379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):124, 55

               
               
               Conread position:783-1108
               
               
               Cow position:chr25:41136063-41135747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 88

               
               
               Conread position:783-1112
               
               
               Cow position:chr25:37648121-37648432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:222
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):282, 71

               
               
               Conread position:783-1113
               
               
               Cow position:chr25:34494481-34494153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):275, 26

               
               
               Conread position:783-1125
               
               
               Cow position:chr25:25109357-25108999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 333

               
               
               Conread position:783-1139
               
               
               Cow position:chr25:33688549-33688191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 232

               
               
               Conread position:784-1077
               
               
               Cow position:chr25:17586348-17586055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 17

               
               
               Conread position:785-1076
               
               
               Cow position:chr25:20633439-20633733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):272, 0

               
               
               Conread position:785-1076
               
               
               Cow position:chr25:37468517-37468806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):32, 93

               
               
               Conread position:785-1084
               
               
               Cow position:chr25:20495244-20495541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):236, 59

               
               
               Conread position:785-1084
               
               
               Cow position:chr25:41120679-41120981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:785-1089
               
               
               Cow position:chr25:3373970-3373661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 127

               
               
               Conread position:785-1089
               
               
               Cow position:chr25:22431426-22431729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):273, 195

               
               
               Conread position:786-1031
               
               
               Cow position:chr25:18423387-18423626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:175
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:786-1081
               
               
               Cow position:chr25:23773568-23773280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:209
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):272, 69

               
               
               Conread position:786-1125
               
               
               Cow position:chr25:17657298-17657632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 122

               
               
               Conread position:789-1107
               
               
               Cow position:chr25:17561725-17562042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 8

               
               
               Conread position:793-935
               
               
               Cow position:chr25:12834900-12834758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:109
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):128, 120

               
               
               Conread position:793-1110
               
               
               Cow position:chr25:33027574-33027263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:201
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):132, 152

               
               
               Conread position:794-1089
               
               
               Cow position:chr25:23673180-23672886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:182
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):259, 224

               
               
               Conread position:797-1089
               
               
               Cow position:chr25:24460018-24459719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):116, 26

               
               
               Conread position:797-1140
               
               
               Cow position:chr25:33575041-33574698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 90

               
               
               Conread position:800-1089
               
               
               Cow position:chr25:21543010-21543299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):162, 65

               
               
               Conread position:801-1084
               
               
               Cow position:chr25:39141510-39141781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):72, 55

               
               
               Conread position:802-1089
               
               
               Cow position:chr25:10704145-10704434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):198, 0

               
               
               Conread position:802-1089
               
               
               Cow position:chr25:18489753-18490043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):160, 0

               
               
               Conread position:802-1089
               
               
               Cow position:chr25:20772642-20772349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 71

               
               
               Conread position:802-1089
               
               
               Cow position:chr25:23999488-23999206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):252, 176

               
               
               Conread position:802-1089
               
               
               Cow position:chr25:24670878-24670592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):235, 68

               
               
               Conread position:802-1093
               
               
               Cow position:chr25:27534018-27533727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:189
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):194, 78

               
               
               Conread position:803-1083
               
               
               Cow position:chr25:1025760-1025474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:192
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):201, 157

               
               
               Conread position:803-1089
               
               
               Cow position:chr25:26913927-26914211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):116, 126

               
               
               Conread position:804-1089
               
               
               Cow position:chr25:29803054-29802768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):250, 0

               
               
               Conread position:805-1003
               
               
               Cow position:chr25:34670725-34670527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):83, 9

               
               
               Conread position:805-1087
               
               
               Cow position:chr25:11665369-11665651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):146, 41

               
               
               Conread position:805-1113
               
               
               Cow position:chr25:26930787-26931097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):159, 0

               
               
               Conread position:808-1089
               
               
               Cow position:chr25:29313619-29313342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):32, 64

               
               
               Conread position:813-949
               
               
               Cow position:chr25:29134396-29134261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:112
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:814-1089
               
               
               Cow position:chr25:12865489-12865756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):243, 43

               
               
               Conread position:815-1083
               
               
               Cow position:chr25:24205405-24205138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:200
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):237, 69

               
               
               Conread position:816-1089
               
               
               Cow position:chr25:8875837-8875562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:816-1089
               
               
               Cow position:chr25:26354080-26353807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):237, 28

               
               
               Conread position:820-1000
               
               
               Cow position:chr25:20368773-20368964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:822-1054
               
               
               Cow position:chr25:41408318-41408550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):125, 148

               
               
               Conread position:822-1089
               
               
               Cow position:chr25:450077-449813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):235, 85

               
               
               Conread position:825-1083
               
               
               Cow position:chr25:33207564-33207307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):208, 99

               
               
               Conread position:825-1089
               
               
               Cow position:chr25:3172687-3172422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:188
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):229, 0

               
               
               Conread position:828-1095
               
               
               Cow position:chr25:17339512-17339234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:188
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):81, 125

               
               
               Conread position:832-1084
               
               
               Cow position:chr25:18208963-18208713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:176
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):30, 63

               
               
               Conread position:835-1106
               
               
               Cow position:chr25:35626509-35626237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:196
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):137, 5

               
               
               Conread position:836-1089
               
               
               Cow position:chr25:25509596-25509850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):221, 0

               
               
               Conread position:836-1118
               
               
               Cow position:chr25:23326303-23326020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):222, 0

               
               
               Conread position:839-1089
               
               
               Cow position:chr25:24228760-24228502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):197, 72

               
               
               Conread position:840-1089
               
               
               Cow position:chr25:11896345-11896595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):214, 0

               
               
               Conread position:850-1042
               
               
               Cow position:chr25:23912771-23912962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:147
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):178, 0

               
               
               Conread position:850-1075
               
               
               Cow position:chr25:41357060-41356834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):207, 0

               
               
               Conread position:852-1089
               
               
               Cow position:chr25:17904378-17904617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:186
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 25

               
               
               Conread position:854-1089
               
               
               Cow position:chr25:40657276-40657502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:181
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):199, 20

               
               
               Conread position:854-1140
               
               
               Cow position:chr25:9958310-9958021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):202, 245

               
               
               Conread position:855-1089
               
               
               Cow position:chr25:26706140-26705905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:186
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):199, 0

               
               
               Conread position:857-1089
               
               
               Cow position:chr25:24637399-24637167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):64, 53

               
               
               Conread position:858-1089
               
               
               Cow position:chr25:23361225-23361467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:172
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):143, 105

               
               
               Conread position:864-1084
               
               
               Cow position:chr25:21071107-21070884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):46, 108

               
               
               Conread position:874-1033
               
               
               Cow position:chr25:2369610-2369769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):106, 13

               
               
               Conread position:874-1084
               
               
               Cow position:chr25:27536251-27536046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):136, 0

               
               
               Conread position:874-1089
               
               
               Cow position:chr25:24303503-24303288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):161, 15

               
               
               Conread position:875-1089
               
               
               Cow position:chr25:31073834-31073619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:163
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):179, 0

               
               
               Conread position:879-1031
               
               
               Cow position:chr25:16801245-16801397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:880-1084
               
               
               Cow position:chr25:18264964-18265169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):174, 12

               
               
               Conread position:880-1089
               
               
               Cow position:chr25:11955598-11955808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):36, 27

               
               
               Conread position:889-1089
               
               
               Cow position:chr25:21903227-21903427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):32, 21

               
               
               Conread position:895-1049
               
               
               Cow position:chr25:4373042-4372888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:914-1083
               
               
               Cow position:chr25:20073464-20073638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:133
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):59, 90

               
               
               Conread position:914-1089
               
               
               Cow position:chr25:19139771-19139595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):140, 0

               
               
               Conread position:915-1076
               
               
               Cow position:chr25:26922644-26922806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):139, 0

               
               
               Conread position:920-1084
               
               
               Cow position:chr25:35040076-35039911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:120
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):134, 0

               
               
               Conread position:920-1089
               
               
               Cow position:chr25:14962056-14961881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:927-1108
               
               
               Cow position:chr25:23393687-23393869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:133
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):131, 61

               
               
               Conread position:928-1089
               
               
               Cow position:chr25:13430292-13430132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):126, 100

               
               
               Conread position:928-1089
               
               
               Cow position:chr25:13786790-13786951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):126, 57

               
               
               Conread position:929-1108
               
               
               Cow position:chr25:19367879-19367699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):23, 41

               
               
               Conread position:945-1095
               
               
               Cow position:chr25:14756577-14756427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:117
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):112, 147

               
               
               Conread position:952-1089
               
               
               Cow position:chr25:6475615-6475477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:293-1077
               
               
               Cow position:chr26:3536558-3537343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:786
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):761, 0

               
               
               Conread position:782-935
               
               
               Cow position:chr26:22619318-22619471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:114
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:782-1082
               
               
               Cow position:chr26:15912563-15912867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:196
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):207, 162

               
               
               Conread position:782-1089
               
               
               Cow position:chr26:2201459-2201763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):273, 121

               
               
               Conread position:782-1089
               
               
               Cow position:chr26:13183236-13183543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):272, 283

               
               
               Conread position:782-1108
               
               
               Cow position:chr26:31139011-31138694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:230
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):93, 188

               
               
               Conread position:782-1113
               
               
               Cow position:chr26:27987661-27987333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 45

               
               
               Conread position:783-908
               
               
               Cow position:chr26:30785701-30785826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:101
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-935
               
               
               Cow position:chr26:27941062-27941214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-944
               
               
               Cow position:chr26:367558-367719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:119
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-988
               
               
               Cow position:chr26:3027691-3027486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-1002
               
               
               Cow position:chr26:3565152-3564931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:165
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):207, 216

               
               
               Conread position:783-1010
               
               
               Cow position:chr26:6844586-6844358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:168
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):139, 0

               
               
               Conread position:783-1010
               
               
               Cow position:chr26:19348568-19348346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:783-1033
               
               
               Cow position:chr26:23590581-23590831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:186
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-1036
               
               
               Cow position:chr26:34271997-34272249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):248, 0

               
               
               Conread position:783-1040
               
               
               Cow position:chr26:6425958-6426217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:783-1044
               
               
               Cow position:chr26:4122594-4122855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-1044
               
               
               Cow position:chr26:25340995-25340736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):148, 17

               
               
               Conread position:783-1051
               
               
               Cow position:chr26:1638110-1637842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-1057
               
               
               Cow position:chr26:3705571-3705842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:197
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:783-1076
               
               
               Cow position:chr26:2670848-2670555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-1076
               
               
               Cow position:chr26:35335286-35334992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):251, 246

               
               
               Conread position:783-1077
               
               
               Cow position:chr26:30594703-30594408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1080
               
               
               Cow position:chr26:12258853-12258557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 74

               
               
               Conread position:783-1083
               
               
               Cow position:chr26:5679456-5679757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1083
               
               
               Cow position:chr26:6321033-6321334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):265, 272

               
               
               Conread position:783-1084
               
               
               Cow position:chr26:17393965-17393667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 100

               
               
               Conread position:783-1084
               
               
               Cow position:chr26:30586419-30586117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1084
               
               
               Cow position:chr26:34014760-34015062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1088
               
               
               Cow position:chr26:17994067-17993759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):138, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr26:1347068-1346761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):270, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr26:1389910-1390215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 208

               
               
               Conread position:783-1089
               
               
               Cow position:chr26:1620579-1620888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 15

               
               
               Conread position:783-1089
               
               
               Cow position:chr26:2349245-2348938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr26:4729397-4729091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 148

               
               
               Conread position:783-1089
               
               
               Cow position:chr26:8884774-8885077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 108

               
               
               Conread position:783-1089
               
               
               Cow position:chr26:12585612-12585305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr26:13807100-13806794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):133, 124

               
               
               Conread position:783-1089
               
               
               Cow position:chr26:14365297-14365002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):275, 88

               
               
               Conread position:783-1089
               
               
               Cow position:chr26:14488328-14488022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 19

               
               
               Conread position:783-1089
               
               
               Cow position:chr26:17327088-17327395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):273, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr26:17329431-17329746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:210
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):64, 227

               
               
               Conread position:783-1089
               
               
               Cow position:chr26:17429549-17429242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr26:18035830-18036143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):48, 128

               
               
               Conread position:783-1089
               
               
               Cow position:chr26:18804437-18804137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):247, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr26:18857048-18857353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 43

               
               
               Conread position:783-1089
               
               
               Cow position:chr26:21012057-21012353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):64, 104

               
               
               Conread position:783-1089
               
               
               Cow position:chr26:21535288-21535595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr26:23889336-23889645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):174, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr26:26285789-26286092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 253

               
               
               Conread position:783-1089
               
               
               Cow position:chr26:34264890-34265197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr26:35423423-35423732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:783-1090
               
               
               Cow position:chr26:9114963-9115273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):211, 238

               
               
               Conread position:783-1094
               
               
               Cow position:chr26:9841474-9841161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:221
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):272, 41

               
               
               Conread position:783-1108
               
               
               Cow position:chr26:799603-799277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 316

               
               
               Conread position:783-1108
               
               
               Cow position:chr26:3230394-3230720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1108
               
               
               Cow position:chr26:9558955-9558628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):170, 310

               
               
               Conread position:783-1108
               
               
               Cow position:chr26:20496461-20496788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):233, 30

               
               
               Conread position:783-1108
               
               
               Cow position:chr26:28707132-28706806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 309

               
               
               Conread position:783-1108
               
               
               Cow position:chr26:35191621-35191296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 309

               
               
               Conread position:783-1121
               
               
               Cow position:chr26:4324767-4324448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:230
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):187, 134

               
               
               Conread position:784-1074
               
               
               Cow position:chr26:31793655-31793944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):269, 248

               
               
               Conread position:784-1113
               
               
               Cow position:chr26:3699897-3700228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):270, 206

               
               
               Conread position:785-947
               
               
               Cow position:chr26:12870108-12869945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:785-1016
               
               
               Cow position:chr26:21823697-21823474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:177
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:785-1069
               
               
               Cow position:chr26:26312789-26313070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):210, 117

               
               
               Conread position:785-1075
               
               
               Cow position:chr26:34034613-34034901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):139, 72

               
               
               Conread position:785-1084
               
               
               Cow position:chr26:35394144-35393856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):261, 40

               
               
               Conread position:785-1084
               
               
               Cow position:chr26:35520476-35520168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:785-1089
               
               
               Cow position:chr26:4752979-4753282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 183

               
               
               Conread position:785-1089
               
               
               Cow position:chr26:8872774-8873079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):296, 41

               
               
               Conread position:785-1089
               
               
               Cow position:chr26:30625681-30625380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:218
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):76, 53

               
               
               Conread position:785-1089
               
               
               Cow position:chr26:35122313-35122009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):268, 174

               
               
               Conread position:785-1094
               
               
               Cow position:chr26:11290081-11290383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):177, 98

               
               
               Conread position:785-1108
               
               
               Cow position:chr26:10699562-10699246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):268, 11

               
               
               Conread position:786-1089
               
               
               Cow position:chr26:33950439-33950137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:203
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):256, 71

               
               
               Conread position:786-1094
               
               
               Cow position:chr26:8654399-8654100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:220
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):121, 52

               
               
               Conread position:787-1089
               
               
               Cow position:chr26:12668385-12668678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:787-1089
               
               
               Cow position:chr26:14896931-14897234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 145

               
               
               Conread position:796-1040
               
               
               Cow position:chr26:8088009-8088249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):70, 101

               
               
               Conread position:796-1077
               
               
               Cow position:chr26:4548544-4548830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:799-1089
               
               
               Cow position:chr26:15891920-15892212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):46, 221

               
               
               Conread position:800-1083
               
               
               Cow position:chr26:7021772-7022042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):238, 14

               
               
               Conread position:802-1084
               
               
               Cow position:chr26:3754977-3755249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):252, 55

               
               
               Conread position:802-1087
               
               
               Cow position:chr26:15551203-15550917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:189
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):119, 73

               
               
               Conread position:802-1089
               
               
               Cow position:chr26:4440808-4440521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):252, 175

               
               
               Conread position:804-1084
               
               
               Cow position:chr26:18934444-18934166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):250, 53

               
               
               Conread position:810-967
               
               
               Cow position:chr26:386652-386809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:119
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:814-1067
               
               
               Cow position:chr26:35421388-35421129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:179
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):190, 170

               
               
               Conread position:817-1068
               
               
               Cow position:chr26:18778511-18778761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):86, 174

               
               
               Conread position:817-1084
               
               
               Cow position:chr26:14173039-14173302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:197
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):12, 128

               
               
               Conread position:817-1084
               
               
               Cow position:chr26:21350469-21350734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:193
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):99, 53

               
               
               Conread position:819-1089
               
               
               Cow position:chr26:2244532-2244273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:195
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):143, 0

               
               
               Conread position:820-1025
               
               
               Cow position:chr26:15078188-15078387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:820-1089
               
               
               Cow position:chr26:8428041-8427770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:183
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):144, 95

               
               
               Conread position:822-1089
               
               
               Cow position:chr26:10490213-10490477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):234, 25

               
               
               Conread position:828-1140
               
               
               Cow position:chr26:18801186-18800872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):189, 69

               
               
               Conread position:831-1076
               
               
               Cow position:chr26:1088159-1088404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:187
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):223, 103

               
               
               Conread position:832-1077
               
               
               Cow position:chr26:18773289-18773043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):222, 0

               
               
               Conread position:832-1082
               
               
               Cow position:chr26:8190900-8190650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):206, 161

               
               
               Conread position:832-1089
               
               
               Cow position:chr26:12552014-12551755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):77, 39

               
               
               Conread position:834-1089
               
               
               Cow position:chr26:3863097-3862845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):223, 34

               
               
               Conread position:835-1108
               
               
               Cow position:chr26:8809858-8810128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):219, 110

               
               
               Conread position:836-1082
               
               
               Cow position:chr26:22660297-22660049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:184
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):140, 0

               
               
               Conread position:837-1118
               
               
               Cow position:chr26:11362690-11362407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):171, 0

               
               
               Conread position:841-1056
               
               
               Cow position:chr26:3199564-3199349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:162
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:844-1016
               
               
               Cow position:chr26:20186296-20186465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:851-1076
               
               
               Cow position:chr26:16781178-16781402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:173
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):203, 140

               
               
               Conread position:854-1089
               
               
               Cow position:chr26:35561064-35560828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:185
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):200, 0

               
               
               Conread position:855-1089
               
               
               Cow position:chr26:22691387-22691623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:187
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:856-1084
               
               
               Cow position:chr26:1885005-1885240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:173
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):100, 188

               
               
               Conread position:857-1087
               
               
               Cow position:chr26:11269229-11269460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 72

               
               
               Conread position:857-1089
               
               
               Cow position:chr26:8083826-8084059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):196, 0

               
               
               Conread position:858-1089
               
               
               Cow position:chr26:7506712-7506481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:175
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):199, 224

               
               
               Conread position:861-1069
               
               
               Cow position:chr26:26280845-26281054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):154, 102

               
               
               Conread position:868-1089
               
               
               Cow position:chr26:10011136-10011355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:877-1083
               
               
               Cow position:chr26:9100958-9100753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):176, 125

               
               
               Conread position:884-1089
               
               
               Cow position:chr26:7381567-7381774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):152, 0

               
               
               Conread position:885-1089
               
               
               Cow position:chr26:1343265-1343062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):169, 99

               
               
               Conread position:895-1139
               
               
               Cow position:chr26:11262781-11263026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):163, 0

               
               
               Conread position:916-1089
               
               
               Cow position:chr26:26238061-26238235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):138, 0

               
               
               Conread position:920-1089
               
               
               Cow position:chr26:1614188-1614353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):134, 49

               
               
               Conread position:924-1077
               
               
               Cow position:chr26:28423672-28423518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:116
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):111, 106

               
               
               Conread position:925-1089
               
               
               Cow position:chr26:1915410-1915575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):132, 0

               
               
               Conread position:927-1089
               
               
               Cow position:chr26:2221931-2221769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:122
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):127, 139

               
               
               Conread position:927-1110
               
               
               Cow position:chr26:17182160-17182337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:928-1084
               
               
               Cow position:chr26:9694725-9694568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):128, 0

               
               
               Conread position:944-1113
               
               
               Cow position:chr26:46564-46393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:124
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:945-1089
               
               
               Cow position:chr26:8739328-8739184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:115
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):109, 28

               
               
               Conread position:953-1075
               
               
               Cow position:chr26:25392893-25393015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:100
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):101, 57

               
               
               Conread position:966-1088
               
               
               Cow position:chr26:3833143-3833266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:100
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:503-1089
               
               
               Cow position:chr27:19487605-19488192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:588
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):551, 0

               
               
               Conread position:773-1089
               
               
               Cow position:chr27:22797785-22797469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):281, 62

               
               
               Conread position:781-977
               
               
               Cow position:chr27:22723236-22723430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):128, 32

               
               
               Conread position:782-1056
               
               
               Cow position:chr27:6380353-6380079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):204, 199

               
               
               Conread position:782-1077
               
               
               Cow position:chr27:14297098-14297383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):272, 88

               
               
               Conread position:782-1083
               
               
               Cow position:chr27:25801325-25801022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:782-1089
               
               
               Cow position:chr27:2000725-2001033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 295

               
               
               Conread position:782-1089
               
               
               Cow position:chr27:5913819-5914121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):275, 46

               
               
               Conread position:782-1089
               
               
               Cow position:chr27:25799140-25799445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:215
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):275, 38

               
               
               Conread position:782-1089
               
               
               Cow position:chr27:26329813-26330120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):137, 147

               
               
               Conread position:783-908
               
               
               Cow position:chr27:773656-773781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:99
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-908
               
               
               Cow position:chr27:18697222-18697347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:100
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-908
               
               
               Cow position:chr27:20716775-20716900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:100
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-938
               
               
               Cow position:chr27:22329095-22329250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:119
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-963
               
               
               Cow position:chr27:9332628-9332808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:108
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):10, 18

               
               
               Conread position:783-979
               
               
               Cow position:chr27:22742533-22742337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:152
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-1016
               
               
               Cow position:chr27:29447195-29446962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:182
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-1035
               
               
               Cow position:chr27:30035696-30035950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:188
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):176, 84

               
               
               Conread position:783-1044
               
               
               Cow position:chr27:7911864-7912122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):189, 0

               
               
               Conread position:783-1048
               
               
               Cow position:chr27:10379068-10379332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 0

               
               
               Conread position:783-1048
               
               
               Cow position:chr27:13900775-13901040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-1050
               
               
               Cow position:chr27:22648025-22647758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-1076
               
               
               Cow position:chr27:8726464-8726753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:207
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):254, 58

               
               
               Conread position:783-1077
               
               
               Cow position:chr27:21204321-21204032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):158, 57

               
               
               Conread position:783-1077
               
               
               Cow position:chr27:27665882-27666183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):169, 0

               
               
               Conread position:783-1083
               
               
               Cow position:chr27:5925154-5925455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 18

               
               
               Conread position:783-1084
               
               
               Cow position:chr27:10578827-10579130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):149, 0

               
               
               Conread position:783-1084
               
               
               Cow position:chr27:12749914-12750208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 102

               
               
               Conread position:783-1084
               
               
               Cow position:chr27:15273191-15272885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:783-1084
               
               
               Cow position:chr27:19523827-19523525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):177, 96

               
               
               Conread position:783-1084
               
               
               Cow position:chr27:24571921-24571622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:210
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):138, 81

               
               
               Conread position:783-1084
               
               
               Cow position:chr27:26855947-26856241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):233, 86

               
               
               Conread position:783-1089
               
               
               Cow position:chr27:166036-165731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):152, 51

               
               
               Conread position:783-1089
               
               
               Cow position:chr27:1082281-1081974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr27:1520561-1520868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr27:1536062-1536358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:217
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):270, 155

               
               
               Conread position:783-1089
               
               
               Cow position:chr27:3759754-3760056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 18

               
               
               Conread position:783-1089
               
               
               Cow position:chr27:4331859-4331552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr27:4982253-4982560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):136, 141

               
               
               Conread position:783-1089
               
               
               Cow position:chr27:5984149-5983842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr27:8960148-8959841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr27:9255255-9254954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):79, 49

               
               
               Conread position:783-1089
               
               
               Cow position:chr27:15543896-15544203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr27:15634453-15634154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 127

               
               
               Conread position:783-1089
               
               
               Cow position:chr27:16031516-16031209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):270, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr27:17422473-17422772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:216
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):138, 59

               
               
               Conread position:783-1089
               
               
               Cow position:chr27:20810302-20810609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr27:24296386-24296081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 146

               
               
               Conread position:783-1089
               
               
               Cow position:chr27:26784703-26785010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr27:27045064-27045365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):275, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr27:29036488-29036192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 219

               
               
               Conread position:783-1089
               
               
               Cow position:chr27:29811212-29811515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):230, 148

               
               
               Conread position:783-1089
               
               
               Cow position:chr27:31268107-31268404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:217
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):271, 96

               
               
               Conread position:783-1090
               
               
               Cow position:chr27:27235224-27234915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):253, 127

               
               
               Conread position:783-1094
               
               
               Cow position:chr27:27556689-27556999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 130

               
               
               Conread position:783-1106
               
               
               Cow position:chr27:8426739-8427061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 20

               
               
               Conread position:783-1108
               
               
               Cow position:chr27:21451326-21451651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):275, 253

               
               
               Conread position:783-1121
               
               
               Cow position:chr27:12146762-12146423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1131
               
               
               Cow position:chr27:31249127-31249473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:240
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):250, 150

               
               
               Conread position:784-1089
               
               
               Cow position:chr27:1501443-1501713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:222
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):273, 73

               
               
               Conread position:784-1089
               
               
               Cow position:chr27:15374703-15375002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 30

               
               
               Conread position:784-1118
               
               
               Cow position:chr27:23075064-23074729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:229
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):265, 126

               
               
               Conread position:785-919
               
               
               Cow position:chr27:15034210-15034077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:785-1016
               
               
               Cow position:chr27:30571716-30571943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:785-1076
               
               
               Cow position:chr27:9990326-9990020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:785-1077
               
               
               Cow position:chr27:25965073-25964783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):271, 110

               
               
               Conread position:785-1089
               
               
               Cow position:chr27:6030657-6030956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:211
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):269, 47

               
               
               Conread position:785-1090
               
               
               Cow position:chr27:3232651-3232345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):272, 0

               
               
               Conread position:785-1137
               
               
               Cow position:chr27:27193478-27193129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):273, 31

               
               
               Conread position:786-1089
               
               
               Cow position:chr27:30584275-30583978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:205
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):269, 14

               
               
               Conread position:786-1108
               
               
               Cow position:chr27:15405533-15405835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):305, 98

               
               
               Conread position:787-1063
               
               
               Cow position:chr27:25971715-25971441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:788-1075
               
               
               Cow position:chr27:10282832-10283119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:194
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):266, 249

               
               
               Conread position:788-1081
               
               
               Cow position:chr27:25984103-25984388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):29, 81

               
               
               Conread position:791-916
               
               
               Cow position:chr27:8591955-8592078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:100
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):116, 0

               
               
               Conread position:794-1089
               
               
               Cow position:chr27:27849162-27849458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):260, 0

               
               
               Conread position:796-1089
               
               
               Cow position:chr27:21284335-21284046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):258, 97

               
               
               Conread position:797-1082
               
               
               Cow position:chr27:17567998-17568283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):257, 85

               
               
               Conread position:800-1089
               
               
               Cow position:chr27:8972344-8972632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):257, 7

               
               
               Conread position:801-1089
               
               
               Cow position:chr27:2558092-2557803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):256, 0

               
               
               Conread position:802-952
               
               
               Cow position:chr27:26599813-26599963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:802-1084
               
               
               Cow position:chr27:25873540-25873816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):110, 204

               
               
               Conread position:802-1089
               
               
               Cow position:chr27:1188555-1188854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:802-1089
               
               
               Cow position:chr27:5991140-5990858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:204
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:802-1089
               
               
               Cow position:chr27:13308544-13308832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):252, 0

               
               
               Conread position:802-1089
               
               
               Cow position:chr27:13353206-13353494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):252, 0

               
               
               Conread position:802-1089
               
               
               Cow position:chr27:23318033-23317754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):70, 38

               
               
               Conread position:804-1048
               
               
               Cow position:chr27:16788538-16788286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):41, 144

               
               
               Conread position:807-1084
               
               
               Cow position:chr27:21342434-21342711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):250, 55

               
               
               Conread position:811-1089
               
               
               Cow position:chr27:16427573-16427851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:195
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):105, 27

               
               
               Conread position:814-1089
               
               
               Cow position:chr27:27291299-27291577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 120

               
               
               Conread position:816-1089
               
               
               Cow position:chr27:31547634-31547349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):89, 224

               
               
               Conread position:816-1113
               
               
               Cow position:chr27:11434090-11434387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):238, 175

               
               
               Conread position:817-1016
               
               
               Cow position:chr27:4978511-4978708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):149, 39

               
               
               Conread position:817-1069
               
               
               Cow position:chr27:23905719-23905972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):198, 111

               
               
               Conread position:817-1084
               
               
               Cow position:chr27:8068380-8068109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):28, 24

               
               
               Conread position:818-1056
               
               
               Cow position:chr27:1845961-1845724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):5, 201

               
               
               Conread position:819-1054
               
               
               Cow position:chr27:15926002-15925767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:824-1089
               
               
               Cow position:chr27:28051848-28051596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:827-1089
               
               
               Cow position:chr27:8200863-8201126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 137

               
               
               Conread position:834-1087
               
               
               Cow position:chr27:28894940-28895189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):135, 92

               
               
               Conread position:838-1089
               
               
               Cow position:chr27:4768371-4768623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):220, 0

               
               
               Conread position:844-1089
               
               
               Cow position:chr27:526156-525911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:189
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):210, 133

               
               
               Conread position:844-1089
               
               
               Cow position:chr27:11489580-11489830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 77

               
               
               Conread position:845-1108
               
               
               Cow position:chr27:27278669-27278918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:181
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:854-1066
               
               
               Cow position:chr27:219849-219645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:855-1076
               
               
               Cow position:chr27:12281652-12281873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):199, 20

               
               
               Conread position:857-1089
               
               
               Cow position:chr27:3994350-3994121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):197, 175

               
               
               Conread position:862-1098
               
               
               Cow position:chr27:344963-344727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):195, 230

               
               
               Conread position:865-1089
               
               
               Cow position:chr27:12277074-12277298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:165
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:871-1068
               
               
               Cow position:chr27:18473225-18473416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):50, 39

               
               
               Conread position:872-1089
               
               
               Cow position:chr27:19932592-19932378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:165
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):185, 38

               
               
               Conread position:874-1083
               
               
               Cow position:chr27:25784781-25784571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):96, 137

               
               
               Conread position:875-1083
               
               
               Cow position:chr27:3990827-3990618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:160
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):182, 0

               
               
               Conread position:875-1089
               
               
               Cow position:chr27:19424405-19424189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:167
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:877-1089
               
               
               Cow position:chr27:30307293-30307081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:163
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):177, 146

               
               
               Conread position:879-1107
               
               
               Cow position:chr27:11480908-11481137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):178, 213

               
               
               Conread position:883-1040
               
               
               Cow position:chr27:2681302-2681458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:116
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):149, 0

               
               
               Conread position:896-1089
               
               
               Cow position:chr27:3653705-3653512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):158, 53

               
               
               Conread position:900-1084
               
               
               Cow position:chr27:15872327-15872136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):68, 17

               
               
               Conread position:914-1058
               
               
               Cow position:chr27:8592411-8592554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):133, 0

               
               
               Conread position:914-1084
               
               
               Cow position:chr27:4823837-4824011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:914-1087
               
               
               Cow position:chr27:6017918-6018089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):141, 46

               
               
               Conread position:919-1089
               
               
               Cow position:chr27:4804804-4804976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:920-1077
               
               
               Cow position:chr27:8429020-8429179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):128, 0

               
               
               Conread position:920-1087
               
               
               Cow position:chr27:4828516-4828686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:927-1076
               
               
               Cow position:chr27:22329521-22329671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:117
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):29, 62

               
               
               Conread position:927-1108
               
               
               Cow position:chr27:6524254-6524071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):35, 79

               
               
               Conread position:928-1089
               
               
               Cow position:chr27:12006174-12006336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:935-1077
               
               
               Cow position:chr27:3866200-3866343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:112
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:946-1075
               
               
               Cow position:chr27:13183219-13183089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:947-1089
               
               
               Cow position:chr27:20001461-20001604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:965-1089
               
               
               Cow position:chr27:15348725-15348850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:99
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:973-1108
               
               
               Cow position:chr27:14669268-14669404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:110
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):81, 126

               
               
               Conread position:711-1051
               
               
               Cow position:chr28:32588443-32588103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:757-1089
               
               
               Cow position:chr28:29823087-29823420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):300, 0

               
               
               Conread position:777-1004
               
               
               Cow position:chr28:14492257-14492481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:163
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):151, 0

               
               
               Conread position:781-993
               
               
               Cow position:chr28:22498231-22498436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:781-1098
               
               
               Cow position:chr28:15004189-15004506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:204
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):188, 230

               
               
               Conread position:781-1118
               
               
               Cow position:chr28:83834-84172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:211
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):222, 60

               
               
               Conread position:782-1002
               
               
               Cow position:chr28:5336933-5336712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):159, 0

               
               
               Conread position:782-1025
               
               
               Cow position:chr28:1836669-1836913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:187
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 0

               
               
               Conread position:782-1060
               
               
               Cow position:chr28:14511374-14511647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):233, 18

               
               
               Conread position:782-1069
               
               
               Cow position:chr28:20630155-20629875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:195
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):272, 112

               
               
               Conread position:782-1081
               
               
               Cow position:chr28:34678267-34677971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):273, 83

               
               
               Conread position:782-1084
               
               
               Cow position:chr28:7004952-7005256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:782-1084
               
               
               Cow position:chr28:10302767-10303067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):272, 52

               
               
               Conread position:782-1089
               
               
               Cow position:chr28:3744898-3745197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):193, 0

               
               
               Conread position:782-1089
               
               
               Cow position:chr28:13462890-13463197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):275, 72

               
               
               Conread position:782-1089
               
               
               Cow position:chr28:23310408-23310102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):272, 46

               
               
               Conread position:783-908
               
               
               Cow position:chr28:22040481-22040358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:100
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:783-973
               
               
               Cow position:chr28:25563335-25563527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:783-990
               
               
               Cow position:chr28:12170658-12170448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:149
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):61, 149

               
               
               Conread position:783-992
               
               
               Cow position:chr28:12407287-12407078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-1016
               
               
               Cow position:chr28:12936484-12936250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:173
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:783-1019
               
               
               Cow position:chr28:13373868-13373641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:173
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:783-1025
               
               
               Cow position:chr28:5571566-5571805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):133, 121

               
               
               Conread position:783-1044
               
               
               Cow position:chr28:24591801-24592060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:783-1061
               
               
               Cow position:chr28:3067818-3068095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:195
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):79, 209

               
               
               Conread position:783-1067
               
               
               Cow position:chr28:4045147-4045429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):132, 127

               
               
               Conread position:783-1069
               
               
               Cow position:chr28:12650157-12650444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1073
               
               
               Cow position:chr28:16543891-16543613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):138, 49

               
               
               Conread position:783-1076
               
               
               Cow position:chr28:34730661-34730953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 22

               
               
               Conread position:783-1077
               
               
               Cow position:chr28:1197041-1197348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:223
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):67, 22

               
               
               Conread position:783-1077
               
               
               Cow position:chr28:1812032-1811743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 127

               
               
               Conread position:783-1077
               
               
               Cow position:chr28:3652174-3652461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 98

               
               
               Conread position:783-1077
               
               
               Cow position:chr28:6230764-6230472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):271, 142

               
               
               Conread position:783-1077
               
               
               Cow position:chr28:7443542-7443247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1077
               
               
               Cow position:chr28:12997612-12997899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):169, 74

               
               
               Conread position:783-1077
               
               
               Cow position:chr28:28935036-28934741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1080
               
               
               Cow position:chr28:3189104-3188806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1081
               
               
               Cow position:chr28:22255271-22254971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1083
               
               
               Cow position:chr28:14666074-14666374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):195, 112

               
               
               Conread position:783-1084
               
               
               Cow position:chr28:1507803-1508105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1084
               
               
               Cow position:chr28:2088501-2088803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1084
               
               
               Cow position:chr28:5748779-5748477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1084
               
               
               Cow position:chr28:10576089-10575796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:205
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):271, 120

               
               
               Conread position:783-1084
               
               
               Cow position:chr28:13880450-13880749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 74

               
               
               Conread position:783-1084
               
               
               Cow position:chr28:25026806-25027105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):78, 27

               
               
               Conread position:783-1084
               
               
               Cow position:chr28:26923702-26923401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):265, 88

               
               
               Conread position:783-1089
               
               
               Cow position:chr28:444335-444642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr28:482781-482474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr28:785594-785901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr28:1956298-1956603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):272, 88

               
               
               Conread position:783-1089
               
               
               Cow position:chr28:2644642-2644949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):272, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr28:3626942-3627247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 18

               
               
               Conread position:783-1089
               
               
               Cow position:chr28:4213820-4214126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 133

               
               
               Conread position:783-1089
               
               
               Cow position:chr28:4929523-4929216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr28:5111795-5111487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):136, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr28:5311901-5312208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr28:5636978-5637284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 235

               
               
               Conread position:783-1089
               
               
               Cow position:chr28:5791587-5791277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 120

               
               
               Conread position:783-1089
               
               
               Cow position:chr28:5816579-5816878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):271, 56

               
               
               Conread position:783-1089
               
               
               Cow position:chr28:5940413-5940720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 18

               
               
               Conread position:783-1089
               
               
               Cow position:chr28:6046724-6047030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 74

               
               
               Conread position:783-1089
               
               
               Cow position:chr28:6478148-6478453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 22

               
               
               Conread position:783-1089
               
               
               Cow position:chr28:6535869-6535564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 22

               
               
               Conread position:783-1089
               
               
               Cow position:chr28:6777076-6776769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr28:6959156-6959463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 18

               
               
               Conread position:783-1089
               
               
               Cow position:chr28:7829434-7829740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 148

               
               
               Conread position:783-1089
               
               
               Cow position:chr28:9181798-9182103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 40

               
               
               Conread position:783-1089
               
               
               Cow position:chr28:12154771-12155075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 130

               
               
               Conread position:783-1089
               
               
               Cow position:chr28:12217362-12217055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr28:13606368-13606666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):254, 22

               
               
               Conread position:783-1089
               
               
               Cow position:chr28:15033151-15032844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr28:15054087-15054390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 192

               
               
               Conread position:783-1089
               
               
               Cow position:chr28:15352190-15351889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:210
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):275, 112

               
               
               Conread position:783-1089
               
               
               Cow position:chr28:15428600-15428903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:213
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):270, 55

               
               
               Conread position:783-1089
               
               
               Cow position:chr28:15604538-15604851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):221, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr28:15917598-15917291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr28:16041725-16041415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):266, 88

               
               
               Conread position:783-1089
               
               
               Cow position:chr28:16181295-16181602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr28:17369016-17369314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 158

               
               
               Conread position:783-1089
               
               
               Cow position:chr28:18517218-18516912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 267

               
               
               Conread position:783-1089
               
               
               Cow position:chr28:20935486-20935178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr28:21568833-21569127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:219
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):271, 18

               
               
               Conread position:783-1089
               
               
               Cow position:chr28:22230402-22230098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):140, 31

               
               
               Conread position:783-1089
               
               
               Cow position:chr28:23619892-23620197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):267, 236

               
               
               Conread position:783-1089
               
               
               Cow position:chr28:24670721-24671027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):270, 210

               
               
               Conread position:783-1089
               
               
               Cow position:chr28:24734462-24734772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:193
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):152, 275

               
               
               Conread position:783-1089
               
               
               Cow position:chr28:24885788-24886094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 74

               
               
               Conread position:783-1089
               
               
               Cow position:chr28:25827186-25826884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):267, 83

               
               
               Conread position:783-1089
               
               
               Cow position:chr28:25849488-25849795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr28:26420073-26419767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 110

               
               
               Conread position:783-1089
               
               
               Cow position:chr28:28357856-28357550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):275, 119

               
               
               Conread position:783-1089
               
               
               Cow position:chr28:28470950-28471259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):142, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr28:28928763-28929067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 18

               
               
               Conread position:783-1089
               
               
               Cow position:chr28:29036725-29036418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr28:30534134-30533823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr28:32786499-32786193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 194

               
               
               Conread position:783-1089
               
               
               Cow position:chr28:33255248-33255555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr28:33639497-33639804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):270, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr28:34582851-34583158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr28:34597171-34597478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1090
               
               
               Cow position:chr28:2663031-2662725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:215
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):138, 100

               
               
               Conread position:783-1090
               
               
               Cow position:chr28:4457252-4457564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:223
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):138, 88

               
               
               Conread position:783-1091
               
               
               Cow position:chr28:4958582-4958269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 81

               
               
               Conread position:783-1092
               
               
               Cow position:chr28:5569297-5569601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 102

               
               
               Conread position:783-1094
               
               
               Cow position:chr28:31849001-31848695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):275, 22

               
               
               Conread position:783-1106
               
               
               Cow position:chr28:25069769-25070098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):221, 65

               
               
               Conread position:783-1107
               
               
               Cow position:chr28:21379433-21379747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):272, 235

               
               
               Conread position:783-1108
               
               
               Cow position:chr28:1025404-1025080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):177, 85

               
               
               Conread position:783-1108
               
               
               Cow position:chr28:1214903-1214577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1108
               
               
               Cow position:chr28:7907618-7907293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 18

               
               
               Conread position:783-1108
               
               
               Cow position:chr28:10294742-10295059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:225
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):92, 55

               
               
               Conread position:783-1108
               
               
               Cow position:chr28:28184312-28184644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):233, 180

               
               
               Conread position:783-1112
               
               
               Cow position:chr28:21362441-21362769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):264, 201

               
               
               Conread position:783-1113
               
               
               Cow position:chr28:15588996-15589325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:228
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):139, 192

               
               
               Conread position:783-1118
               
               
               Cow position:chr28:5211049-5211385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1118
               
               
               Cow position:chr28:29435859-29435537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):327, 87

               
               
               Conread position:784-1051
               
               
               Cow position:chr28:34606522-34606785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:184
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:784-1075
               
               
               Cow position:chr28:957804-958094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):156, 87

               
               
               Conread position:784-1084
               
               
               Cow position:chr28:32731084-32730785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):269, 166

               
               
               Conread position:784-1089
               
               
               Cow position:chr28:5824763-5825083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):139, 0

               
               
               Conread position:784-1089
               
               
               Cow position:chr28:20967741-20967435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):270, 0

               
               
               Conread position:784-1089
               
               
               Cow position:chr28:25595831-25596137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):270, 0

               
               
               Conread position:785-1066
               
               
               Cow position:chr28:12047607-12047334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:207
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):225, 184

               
               
               Conread position:785-1076
               
               
               Cow position:chr28:23794632-23794347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):264, 62

               
               
               Conread position:785-1084
               
               
               Cow position:chr28:3004592-3004290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):231, 0

               
               
               Conread position:785-1084
               
               
               Cow position:chr28:30305079-30304781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 35

               
               
               Conread position:785-1089
               
               
               Cow position:chr28:6472508-6472205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):272, 192

               
               
               Conread position:785-1089
               
               
               Cow position:chr28:8718024-8717719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):269, 0

               
               
               Conread position:785-1089
               
               
               Cow position:chr28:10772014-10772317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):269, 104

               
               
               Conread position:785-1089
               
               
               Cow position:chr28:32343591-32343891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):269, 59

               
               
               Conread position:785-1108
               
               
               Cow position:chr28:10279783-10280101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 110

               
               
               Conread position:785-1108
               
               
               Cow position:chr28:17600056-17599740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:222
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):269, 25

               
               
               Conread position:785-1116
               
               
               Cow position:chr28:12952138-12952455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):135, 124

               
               
               Conread position:785-1118
               
               
               Cow position:chr28:15600805-15600474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):115, 157

               
               
               Conread position:786-1004
               
               
               Cow position:chr28:4376455-4376237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):135, 121

               
               
               Conread position:786-1088
               
               
               Cow position:chr28:7021688-7021386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):91, 184

               
               
               Conread position:789-1056
               
               
               Cow position:chr28:10590428-10590160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 20

               
               
               Conread position:792-1062
               
               
               Cow position:chr28:1164953-1164684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 8

               
               
               Conread position:792-1089
               
               
               Cow position:chr28:10325997-10326290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):99, 79

               
               
               Conread position:793-1076
               
               
               Cow position:chr28:30368885-30369163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:197
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):118, 46

               
               
               Conread position:793-1077
               
               
               Cow position:chr28:9443318-9443044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):260, 114

               
               
               Conread position:793-1090
               
               
               Cow position:chr28:22553469-22553759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:205
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):215, 19

               
               
               Conread position:793-1108
               
               
               Cow position:chr28:23674740-23675067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:236
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):69, 51

               
               
               Conread position:794-1076
               
               
               Cow position:chr28:28441677-28441955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):54, 157

               
               
               Conread position:796-997
               
               
               Cow position:chr28:7547675-7547876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:796-1084
               
               
               Cow position:chr28:20410682-20410971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):162, 207

               
               
               Conread position:796-1089
               
               
               Cow position:chr28:19834047-19834348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):220, 114

               
               
               Conread position:797-979
               
               
               Cow position:chr28:25796587-25796401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):45, 116

               
               
               Conread position:797-1089
               
               
               Cow position:chr28:24498991-24499283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 102

               
               
               Conread position:800-1088
               
               
               Cow position:chr28:17603085-17602810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):168, 0

               
               
               Conread position:801-1084
               
               
               Cow position:chr28:601228-600955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:203
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):253, 53

               
               
               Conread position:802-937
               
               
               Cow position:chr28:10643545-10643409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:802-1025
               
               
               Cow position:chr28:23394075-23393854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):168, 36

               
               
               Conread position:802-1083
               
               
               Cow position:chr28:526278-526562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):40, 115

               
               
               Conread position:802-1089
               
               
               Cow position:chr28:7335929-7336217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):252, 0

               
               
               Conread position:802-1089
               
               
               Cow position:chr28:10458146-10457849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):72, 122

               
               
               Conread position:802-1089
               
               
               Cow position:chr28:30097824-30098112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):255, 0

               
               
               Conread position:803-1089
               
               
               Cow position:chr28:980317-980030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:198
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):118, 129

               
               
               Conread position:804-1060
               
               
               Cow position:chr28:11502268-11502011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):250, 0

               
               
               Conread position:804-1089
               
               
               Cow position:chr28:6474302-6474018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):242, 10

               
               
               Conread position:804-1089
               
               
               Cow position:chr28:7059178-7059464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):250, 0

               
               
               Conread position:804-1094
               
               
               Cow position:chr28:12176852-12177134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:204
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):6, 11

               
               
               Conread position:805-1037
               
               
               Cow position:chr28:11544531-11544299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:805-1081
               
               
               Cow position:chr28:7654669-7654398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:200
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):155, 229

               
               
               Conread position:805-1081
               
               
               Cow position:chr28:30966158-30966431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:197
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):116, 105

               
               
               Conread position:805-1084
               
               
               Cow position:chr28:3645398-3645673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:200
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):232, 39

               
               
               Conread position:805-1089
               
               
               Cow position:chr28:22200915-22201189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):77, 63

               
               
               Conread position:805-1089
               
               
               Cow position:chr28:24620895-24620629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:805-1112
               
               
               Cow position:chr28:32276504-32276825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:205
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):125, 0

               
               
               Conread position:808-1123
               
               
               Cow position:chr28:28598173-28598485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:206
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):11, 73

               
               
               Conread position:810-1108
               
               
               Cow position:chr28:14149949-14150241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:213
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):186, 65

               
               
               Conread position:811-1089
               
               
               Cow position:chr28:17249627-17249351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:189
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):7, 177

               
               
               Conread position:812-1061
               
               
               Cow position:chr28:25761844-25762090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:184
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):6, 86

               
               
               Conread position:813-1016
               
               
               Cow position:chr28:2414493-2414693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:814-1066
               
               
               Cow position:chr28:8965925-8965674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:168
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):59, 160

               
               
               Conread position:814-1089
               
               
               Cow position:chr28:7083998-7083723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):192, 15

               
               
               Conread position:815-1089
               
               
               Cow position:chr28:10599620-10599886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:185
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):270, 78

               
               
               Conread position:817-1077
               
               
               Cow position:chr28:1289915-1289650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:183
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:817-1089
               
               
               Cow position:chr28:32764183-32764462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:818-1089
               
               
               Cow position:chr28:22580010-22580266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:192
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):238, 52

               
               
               Conread position:818-1089
               
               
               Cow position:chr28:26563147-26563418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):100, 89

               
               
               Conread position:819-961
               
               
               Cow position:chr28:21767783-21767641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:819-1084
               
               
               Cow position:chr28:21768330-21768064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):238, 0

               
               
               Conread position:821-1108
               
               
               Cow position:chr28:21848969-21848678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):6, 111

               
               
               Conread position:822-1120
               
               
               Cow position:chr28:13522653-13522950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 66

               
               
               Conread position:823-1077
               
               
               Cow position:chr28:21896250-21896504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):231, 9

               
               
               Conread position:824-1084
               
               
               Cow position:chr28:1384507-1384226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):46, 87

               
               
               Conread position:824-1108
               
               
               Cow position:chr28:25701964-25701684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):193, 40

               
               
               Conread position:825-1032
               
               
               Cow position:chr28:22133497-22133704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:828-1089
               
               
               Cow position:chr28:7744075-7744331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):226, 0

               
               
               Conread position:831-1085
               
               
               Cow position:chr28:17663974-17663719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):226, 0

               
               
               Conread position:831-1089
               
               
               Cow position:chr28:17391408-17391667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):226, 0

               
               
               Conread position:833-1056
               
               
               Cow position:chr28:34880112-34880337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:168
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):128, 163

               
               
               Conread position:839-1089
               
               
               Cow position:chr28:9288410-9288159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):215, 0

               
               
               Conread position:840-1084
               
               
               Cow position:chr28:17745342-17745106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:165
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:841-1084
               
               
               Cow position:chr28:33768011-33768254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):213, 39

               
               
               Conread position:843-1089
               
               
               Cow position:chr28:17031103-17030861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 63

               
               
               Conread position:844-1077
               
               
               Cow position:chr28:10479900-10479668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:177
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):210, 175

               
               
               Conread position:844-1089
               
               
               Cow position:chr28:11256898-11256651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):17, 7

               
               
               Conread position:846-1090
               
               
               Cow position:chr28:1777554-1777796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:846-1108
               
               
               Cow position:chr28:26717722-26717984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):165, 23

               
               
               Conread position:854-1089
               
               
               Cow position:chr28:10194607-10194371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:182
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):200, 0

               
               
               Conread position:854-1089
               
               
               Cow position:chr28:13323131-13323367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:183
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):200, 0

               
               
               Conread position:856-1089
               
               
               Cow position:chr28:21104970-21104735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):60, 24

               
               
               Conread position:857-1095
               
               
               Cow position:chr28:31850830-31850594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):170, 106

               
               
               Conread position:857-1113
               
               
               Cow position:chr28:22234473-22234223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):180, 23

               
               
               Conread position:861-1108
               
               
               Cow position:chr28:10162243-10162483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:187
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):194, 110

               
               
               Conread position:874-1091
               
               
               Cow position:chr28:25773009-25773228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):140, 86

               
               
               Conread position:875-1089
               
               
               Cow position:chr28:18145682-18145472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):36, 42

               
               
               Conread position:884-1034
               
               
               Cow position:chr28:31068638-31068788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:894-1082
               
               
               Cow position:chr28:34649408-34649596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):163, 51

               
               
               Conread position:895-1106
               
               
               Cow position:chr28:7685897-7685685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):158, 0

               
               
               Conread position:900-1111
               
               
               Cow position:chr28:5772472-5772674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):170, 33

               
               
               Conread position:903-1082
               
               
               Cow position:chr28:15714879-15715060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:914-1092
               
               
               Cow position:chr28:23839078-23839257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):140, 0

               
               
               Conread position:914-1108
               
               
               Cow position:chr28:30870138-30870325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):144, 48

               
               
               Conread position:914-1123
               
               
               Cow position:chr28:7888954-7888744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):191, 0

               
               
               Conread position:915-1089
               
               
               Cow position:chr28:15576950-15577124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:920-1083
               
               
               Cow position:chr28:34083205-34083043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):134, 16

               
               
               Conread position:925-1087
               
               
               Cow position:chr28:32301518-32301357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):88, 134

               
               
               Conread position:928-1063
               
               
               Cow position:chr28:30249421-30249285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:931-1089
               
               
               Cow position:chr28:331825-331666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:931-1089
               
               
               Cow position:chr28:6319870-6320028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):122, 43

               
               
               Conread position:938-1089
               
               
               Cow position:chr28:16597232-16597384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):116, 0

               
               
               Conread position:946-1089
               
               
               Cow position:chr28:8971169-8971311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):111, 22

               
               
               Conread position:954-1089
               
               
               Cow position:chr28:5804369-5804503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:111
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):102, 16

               
               
               Conread position:962-1084
               
               
               Cow position:chr28:30329033-30328910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:95
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:972-1089
               
               
               Cow position:chr28:24992603-24992721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:93
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:980-1089
               
               
               Cow position:chr28:3001732-3001622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:90
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:769-977
               
               
               Cow position:chr29:43728221-43728428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:776-1084
               
               
               Cow position:chr29:19956218-19956517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:215
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:780-1084
               
               
               Cow position:chr29:15262012-15262306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:781-1084
               
               
               Cow position:chr29:29616206-29615908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:782-929
               
               
               Cow position:chr29:253812-253958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:108
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:782-1016
               
               
               Cow position:chr29:43626745-43626511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):79, 67

               
               
               Conread position:782-1076
               
               
               Cow position:chr29:4518765-4519057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:782-1089
               
               
               Cow position:chr29:799792-799484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:220
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):84, 68

               
               
               Conread position:782-1089
               
               
               Cow position:chr29:15931404-15931092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:203
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):61, 42

               
               
               Conread position:782-1089
               
               
               Cow position:chr29:28657471-28657163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):272, 0

               
               
               Conread position:782-1123
               
               
               Cow position:chr29:5399186-5399539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:232
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):28, 33

               
               
               Conread position:783-905
               
               
               Cow position:chr29:32207611-32207733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:99
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-908
               
               
               Cow position:chr29:5426528-5426403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:101
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-908
               
               
               Cow position:chr29:30708131-30708256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-908
               
               
               Cow position:chr29:39424240-39424115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:99
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-908
               
               
               Cow position:chr29:40500097-40499972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:101
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-908
               
               
               Cow position:chr29:41184118-41183993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:101
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-939
               
               
               Cow position:chr29:9862047-9861891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:121
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-949
               
               
               Cow position:chr29:15623801-15623637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:783-956
               
               
               Cow position:chr29:34807438-34807610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:783-960
               
               
               Cow position:chr29:6872657-6872478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:783-967
               
               
               Cow position:chr29:16596518-16596698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):130, 0

               
               
               Conread position:783-976
               
               
               Cow position:chr29:30412615-30412805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):36, 108

               
               
               Conread position:783-980
               
               
               Cow position:chr29:3711914-3712112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):33, 76

               
               
               Conread position:783-980
               
               
               Cow position:chr29:19656798-19656995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-986
               
               
               Cow position:chr29:16171205-16171001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):188, 0

               
               
               Conread position:783-994
               
               
               Cow position:chr29:9639649-9639444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):148, 0

               
               
               Conread position:783-1002
               
               
               Cow position:chr29:31123467-31123248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-1032
               
               
               Cow position:chr29:15995484-15995235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:186
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-1034
               
               
               Cow position:chr29:14082009-14081755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:182
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):233, 0

               
               
               Conread position:783-1034
               
               
               Cow position:chr29:27260217-27259963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):84, 57

               
               
               Conread position:783-1035
               
               
               Cow position:chr29:40471563-40471815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-1036
               
               
               Cow position:chr29:35002759-35002506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:189
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):105, 81

               
               
               Conread position:783-1056
               
               
               Cow position:chr29:35299818-35300090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:783-1069
               
               
               Cow position:chr29:1577076-1576792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:206
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):139, 102

               
               
               Conread position:783-1070
               
               
               Cow position:chr29:6215989-6216271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):245, 0

               
               
               Conread position:783-1076
               
               
               Cow position:chr29:8511394-8511676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:200
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):84, 30

               
               
               Conread position:783-1077
               
               
               Cow position:chr29:607739-607444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):275, 0

               
               
               Conread position:783-1077
               
               
               Cow position:chr29:3585311-3585019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 167

               
               
               Conread position:783-1077
               
               
               Cow position:chr29:23754934-23754629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:210
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):221, 176

               
               
               Conread position:783-1082
               
               
               Cow position:chr29:15943251-15943550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):228, 219

               
               
               Conread position:783-1083
               
               
               Cow position:chr29:2430007-2430288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:225
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):271, 20

               
               
               Conread position:783-1083
               
               
               Cow position:chr29:9330815-9331107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:217
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):173, 211

               
               
               Conread position:783-1083
               
               
               Cow position:chr29:17408027-17408331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 41

               
               
               Conread position:783-1084
               
               
               Cow position:chr29:2102745-2103047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1084
               
               
               Cow position:chr29:6934389-6934689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):136, 216

               
               
               Conread position:783-1084
               
               
               Cow position:chr29:8666572-8666862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:216
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):271, 104

               
               
               Conread position:783-1084
               
               
               Cow position:chr29:13057644-13057940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:219
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):179, 73

               
               
               Conread position:783-1084
               
               
               Cow position:chr29:16347104-16347401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 227

               
               
               Conread position:783-1084
               
               
               Cow position:chr29:31094688-31094386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1084
               
               
               Cow position:chr29:32543034-32543338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:783-1084
               
               
               Cow position:chr29:32807279-32807568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 222

               
               
               Conread position:783-1085
               
               
               Cow position:chr29:43964655-43964357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):188, 98

               
               
               Conread position:783-1088
               
               
               Cow position:chr29:10248785-10248483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):272, 171

               
               
               Conread position:783-1088
               
               
               Cow position:chr29:14208658-14208363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):158, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr29:45562-45257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 96

               
               
               Conread position:783-1089
               
               
               Cow position:chr29:726627-726934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr29:2463972-2463667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 111

               
               
               Conread position:783-1089
               
               
               Cow position:chr29:2483806-2484113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr29:2693343-2693645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:217
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):274, 219

               
               
               Conread position:783-1089
               
               
               Cow position:chr29:2838438-2838131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr29:3329491-3329797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 74

               
               
               Conread position:783-1089
               
               
               Cow position:chr29:4163586-4163893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr29:4200288-4200583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 114

               
               
               Conread position:783-1089
               
               
               Cow position:chr29:6218898-6218601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:217
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):271, 40

               
               
               Conread position:783-1089
               
               
               Cow position:chr29:6263109-6262804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 17

               
               
               Conread position:783-1089
               
               
               Cow position:chr29:7812299-7811992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr29:7847287-7847597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):173, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr29:8624298-8623991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr29:10237771-10237462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):199, 121

               
               
               Conread position:783-1089
               
               
               Cow position:chr29:10644513-10644207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 265

               
               
               Conread position:783-1089
               
               
               Cow position:chr29:10820817-10820510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):133, 123

               
               
               Conread position:783-1089
               
               
               Cow position:chr29:10845854-10846161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr29:13027120-13027427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr29:15117927-15117621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 22

               
               
               Conread position:783-1089
               
               
               Cow position:chr29:15699210-15699517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr29:15966656-15966349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr29:16036519-16036212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr29:16064609-16064915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr29:19515446-19515141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 289

               
               
               Conread position:783-1089
               
               
               Cow position:chr29:19525391-19525085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr29:19620370-19620064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 242

               
               
               Conread position:783-1089
               
               
               Cow position:chr29:20254065-20254371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 20

               
               
               Conread position:783-1089
               
               
               Cow position:chr29:21226875-21227181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 161

               
               
               Conread position:783-1089
               
               
               Cow position:chr29:21429962-21429655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr29:21474047-21474354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr29:22745798-22746105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr29:24806354-24806660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):267, 55

               
               
               Conread position:783-1089
               
               
               Cow position:chr29:25929621-25929302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr29:26161937-26161628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 20

               
               
               Conread position:783-1089
               
               
               Cow position:chr29:28697480-28697174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 18

               
               
               Conread position:783-1089
               
               
               Cow position:chr29:31184274-31184581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr29:31764938-31765245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr29:32291494-32291799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):233, 51

               
               
               Conread position:783-1089
               
               
               Cow position:chr29:32352516-32352802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):219, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr29:32515223-32515533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr29:32556846-32556539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr29:32893628-32893919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:203
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):271, 40

               
               
               Conread position:783-1089
               
               
               Cow position:chr29:34524424-34524117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr29:35264815-35265122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr29:35274131-35273834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 30

               
               
               Conread position:783-1089
               
               
               Cow position:chr29:39076820-39076514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 263

               
               
               Conread position:783-1089
               
               
               Cow position:chr29:42256080-42255773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr29:43326409-43326719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr29:43518296-43518009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:212
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):74, 59

               
               
               Conread position:783-1089
               
               
               Cow position:chr29:45207410-45207715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):269, 102

               
               
               Conread position:783-1089
               
               
               Cow position:chr29:45626243-45626545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):155, 0

               
               
               Conread position:783-1090
               
               
               Cow position:chr29:2486132-2485817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:221
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):71, 133

               
               
               Conread position:783-1090
               
               
               Cow position:chr29:22949997-22949692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:216
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):271, 143

               
               
               Conread position:783-1100
               
               
               Cow position:chr29:18523530-18523200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:224
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):219, 0

               
               
               Conread position:783-1108
               
               
               Cow position:chr29:408364-408040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 97

               
               
               Conread position:783-1108
               
               
               Cow position:chr29:2745600-2745278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 41

               
               
               Conread position:783-1108
               
               
               Cow position:chr29:5240292-5240618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1108
               
               
               Cow position:chr29:9079900-9079573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 112

               
               
               Conread position:783-1108
               
               
               Cow position:chr29:12797485-12797806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):139, 17

               
               
               Conread position:783-1108
               
               
               Cow position:chr29:21254855-21255181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:228
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):83, 42

               
               
               Conread position:783-1108
               
               
               Cow position:chr29:23979609-23979934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 309

               
               
               Conread position:783-1108
               
               
               Cow position:chr29:30433295-30432968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:783-1113
               
               
               Cow position:chr29:22279272-22279603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 18

               
               
               Conread position:783-1127
               
               
               Cow position:chr29:9963355-9963691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:235
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):79, 89

               
               
               Conread position:784-1075
               
               
               Cow position:chr29:4864231-4864514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 68

               
               
               Conread position:784-1089
               
               
               Cow position:chr29:4217216-4217518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):272, 73

               
               
               Conread position:784-1089
               
               
               Cow position:chr29:20972643-20972336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:205
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):159, 30

               
               
               Conread position:784-1108
               
               
               Cow position:chr29:5340190-5339866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:206
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):78, 84

               
               
               Conread position:784-1108
               
               
               Cow position:chr29:16013279-16012950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 315

               
               
               Conread position:784-1118
               
               
               Cow position:chr29:32289290-32289625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):269, 0

               
               
               Conread position:785-934
               
               
               Cow position:chr29:28578637-28578787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:785-977
               
               
               Cow position:chr29:32805475-32805667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:785-1006
               
               
               Cow position:chr29:5960736-5960954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:168
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):134, 100

               
               
               Conread position:785-1075
               
               
               Cow position:chr29:15942134-15941835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:785-1084
               
               
               Cow position:chr29:18361698-18361398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 247

               
               
               Conread position:785-1084
               
               
               Cow position:chr29:34794963-34794663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):272, 0

               
               
               Conread position:785-1084
               
               
               Cow position:chr29:45462133-45462433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):134, 144

               
               
               Conread position:785-1089
               
               
               Cow position:chr29:10452915-10452611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:785-1089
               
               
               Cow position:chr29:40294232-40294512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):269, 57

               
               
               Conread position:785-1106
               
               
               Cow position:chr29:19890455-19890790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):148, 320

               
               
               Conread position:786-1088
               
               
               Cow position:chr29:32962216-32962519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):255, 22

               
               
               Conread position:786-1089
               
               
               Cow position:chr29:34737792-34737487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 68

               
               
               Conread position:789-1089
               
               
               Cow position:chr29:7701461-7701179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:213
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):265, 18

               
               
               Conread position:792-1089
               
               
               Cow position:chr29:42806899-42807196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):265, 11

               
               
               Conread position:796-1077
               
               
               Cow position:chr29:7723589-7723866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:212
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):167, 42

               
               
               Conread position:796-1087
               
               
               Cow position:chr29:2886757-2886474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:204
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):113, 131

               
               
               Conread position:797-1076
               
               
               Cow position:chr29:21546831-21546562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:195
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):257, 41

               
               
               Conread position:801-1109
               
               
               Cow position:chr29:7748783-7748469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:213
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):126, 7

               
               
               Conread position:802-960
               
               
               Cow position:chr29:5390152-5389994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:125
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:802-1035
               
               
               Cow position:chr29:2184018-2184256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:184
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:802-1067
               
               
               Cow position:chr29:36322937-36323208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:181
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):14, 172

               
               
               Conread position:802-1075
               
               
               Cow position:chr29:8892332-8892064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):252, 72

               
               
               Conread position:802-1084
               
               
               Cow position:chr29:13585133-13585415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):252, 264

               
               
               Conread position:802-1089
               
               
               Cow position:chr29:1478369-1478656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):252, 270

               
               
               Conread position:802-1089
               
               
               Cow position:chr29:17138021-17138313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 55

               
               
               Conread position:803-966
               
               
               Cow position:chr29:16615608-16615448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:803-1012
               
               
               Cow position:chr29:24668433-24668646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:803-1108
               
               
               Cow position:chr29:35260819-35261114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):251, 85

               
               
               Conread position:804-1089
               
               
               Cow position:chr29:35956383-35956097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):253, 0

               
               
               Conread position:805-1083
               
               
               Cow position:chr29:29600255-29599983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):188, 87

               
               
               Conread position:805-1084
               
               
               Cow position:chr29:17153171-17153445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):253, 37

               
               
               Conread position:805-1108
               
               
               Cow position:chr29:34875905-34876202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:196
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):249, 52

               
               
               Conread position:806-1108
               
               
               Cow position:chr29:45651630-45651317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:813-1089
               
               
               Cow position:chr29:3485980-3486252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:195
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):79, 55

               
               
               Conread position:813-1089
               
               
               Cow position:chr29:40418742-40418470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:193
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):241, 26

               
               
               Conread position:814-1089
               
               
               Cow position:chr29:21535979-21535714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:192
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):240, 93

               
               
               Conread position:814-1089
               
               
               Cow position:chr29:32800197-32800481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:206
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):7, 126

               
               
               Conread position:817-1089
               
               
               Cow position:chr29:40618906-40618648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):237, 93

               
               
               Conread position:818-967
               
               
               Cow position:chr29:35739784-35739635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:818-1089
               
               
               Cow position:chr29:132610-132877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:198
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:818-1089
               
               
               Cow position:chr29:36628146-36628424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:186
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):122, 239

               
               
               Conread position:820-1089
               
               
               Cow position:chr29:25479587-25479857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 209

               
               
               Conread position:821-1004
               
               
               Cow position:chr29:107974-108155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:131
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:824-1089
               
               
               Cow position:chr29:16102178-16101913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):233, 242

               
               
               Conread position:833-1077
               
               
               Cow position:chr29:34121557-34121309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):34, 7

               
               
               Conread position:835-1089
               
               
               Cow position:chr29:24577604-24577858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):219, 36

               
               
               Conread position:838-1089
               
               
               Cow position:chr29:7665046-7664794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:190
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):212, 122

               
               
               Conread position:838-1089
               
               
               Cow position:chr29:34331476-34331223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:181
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):197, 0

               
               
               Conread position:838-1109
               
               
               Cow position:chr29:29590034-29589771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):134, 95

               
               
               Conread position:840-1089
               
               
               Cow position:chr29:3345366-3345611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:168
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):214, 87

               
               
               Conread position:854-1084
               
               
               Cow position:chr29:27813660-27813884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:169
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):61, 92

               
               
               Conread position:857-1084
               
               
               Cow position:chr29:3169883-3169657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):32, 97

               
               
               Conread position:857-1089
               
               
               Cow position:chr29:27310680-27310447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:165
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):176, 188

               
               
               Conread position:857-1089
               
               
               Cow position:chr29:32732073-32732305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):200, 18

               
               
               Conread position:857-1089
               
               
               Cow position:chr29:40156716-40156949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):197, 0

               
               
               Conread position:857-1118
               
               
               Cow position:chr29:14838996-14839255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:186
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):196, 13

               
               
               Conread position:858-1069
               
               
               Cow position:chr29:32643418-32643621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:860-1101
               
               
               Cow position:chr29:11159549-11159305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:184
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):194, 0

               
               
               Conread position:872-1106
               
               
               Cow position:chr29:7604379-7604613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):183, 114

               
               
               Conread position:874-1084
               
               
               Cow position:chr29:11785993-11786203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):180, 38

               
               
               Conread position:875-1089
               
               
               Cow position:chr29:27702067-27702282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:168
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 0

               
               
               Conread position:877-1089
               
               
               Cow position:chr29:38746039-38746253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:167
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:880-1089
               
               
               Cow position:chr29:11365017-11365224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:149
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):41, 26

               
               
               Conread position:892-1084
               
               
               Cow position:chr29:14373514-14373322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:137
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):162, 146

               
               
               Conread position:896-1089
               
               
               Cow position:chr29:13624363-13624169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):158, 0

               
               
               Conread position:904-1080
               
               
               Cow position:chr29:35281095-35280919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):150, 17

               
               
               Conread position:914-1088
               
               
               Cow position:chr29:36208726-36208900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:143
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:914-1095
               
               
               Cow position:chr29:43255100-43254923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):141, 111

               
               
               Conread position:914-1108
               
               
               Cow position:chr29:36634321-36634125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:142
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):122, 110

               
               
               Conread position:920-1108
               
               
               Cow position:chr29:36404256-36404444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:133
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):134, 178

               
               
               Conread position:927-1089
               
               
               Cow position:chr29:40498833-40498671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):130, 91

               
               
               Conread position:928-1089
               
               
               Cow position:chr29:2307045-2307207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):129, 0

               
               
               Conread position:928-1089
               
               
               Cow position:chr29:12194391-12194553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:928-1089
               
               
               Cow position:chr29:15072438-15072276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:130
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):125, 0

               
               
               Conread position:928-1091
               
               
               Cow position:chr29:34806981-34806817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):9, 66

               
               
               Conread position:930-1082
               
               
               Cow position:chr29:13099215-13099371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:931-1089
               
               
               Cow position:chr29:7428096-7427937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:936-1089
               
               
               Cow position:chr29:38248127-38247976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:111
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:942-1089
               
               
               Cow position:chr29:38350298-38350149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:113
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:945-1106
               
               
               Cow position:chr29:38409253-38409416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:122
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):35, 149

               
               
               Conread position:950-1122
               
               
               Cow position:chr29:35076028-35076200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):107, 142

               
               
               Conread position:956-1089
               
               
               Cow position:chr29:649123-649257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:956-1089
               
               
               Cow position:chr29:40954824-40954690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:107
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:964-1089
               
               
               Cow position:chr29:18010654-18010780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:99
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:965-1089
               
               
               Cow position:chr29:38229087-38229212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:98
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:969-1089
               
               
               Cow position:chr29:27976920-27976800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:97
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):85, 56

               
               
               Conread position:970-1089
               
               
               Cow position:chr29:43728708-43728828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:95
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:431-1089
               
               
               Cow position:chr3:24315433-24316092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:660
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):623, 0

               
               
               Conread position:773-1089
               
               
               Cow position:chr3:12749707-12750019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:223
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):9, 17

               
               
               Conread position:774-1004
               
               
               Cow position:chr3:47341472-47341247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:162
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:774-1089
               
               
               Cow position:chr3:2572331-2572646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):280, 22

               
               
               Conread position:776-1084
               
               
               Cow position:chr3:50112216-50111911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:205
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):242, 80

               
               
               Conread position:777-1084
               
               
               Cow position:chr3:38251656-38251958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):71, 156

               
               
               Conread position:781-1089
               
               
               Cow position:chr3:35342460-35342769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):273, 0

               
               
               Conread position:782-1031
               
               
               Cow position:chr3:4810954-4811198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):28, 33

               
               
               Conread position:782-1032
               
               
               Cow position:chr3:58103395-58103644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:177
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):233, 86

               
               
               Conread position:782-1050
               
               
               Cow position:chr3:12664744-12665012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:782-1064
               
               
               Cow position:chr3:29581470-29581753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:194
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):36, 262

               
               
               Conread position:782-1070
               
               
               Cow position:chr3:45864089-45863789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:204
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):50, 135

               
               
               Conread position:782-1076
               
               
               Cow position:chr3:69421654-69421363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):273, 75

               
               
               Conread position:782-1082
               
               
               Cow position:chr3:73638094-73638391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):14, 108

               
               
               Conread position:782-1083
               
               
               Cow position:chr3:40285505-40285202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):275, 0

               
               
               Conread position:782-1083
               
               
               Cow position:chr3:56963621-56963317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:206
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):39, 28

               
               
               Conread position:782-1089
               
               
               Cow position:chr3:1482846-1483148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):122, 28

               
               
               Conread position:782-1089
               
               
               Cow position:chr3:9404423-9404117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):73, 210

               
               
               Conread position:782-1089
               
               
               Cow position:chr3:14452469-14452777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 254

               
               
               Conread position:782-1089
               
               
               Cow position:chr3:18759606-18759303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 71

               
               
               Conread position:782-1089
               
               
               Cow position:chr3:18814317-18814625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):272, 0

               
               
               Conread position:782-1089
               
               
               Cow position:chr3:29574315-29574007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):272, 0

               
               
               Conread position:782-1089
               
               
               Cow position:chr3:32220543-32220842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:782-1089
               
               
               Cow position:chr3:53908128-53907814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):28, 33

               
               
               Conread position:782-1089
               
               
               Cow position:chr3:56719515-56719207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 157

               
               
               Conread position:782-1089
               
               
               Cow position:chr3:59332272-59332578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):272, 89

               
               
               Conread position:782-1089
               
               
               Cow position:chr3:66608376-66608677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):272, 71

               
               
               Conread position:782-1089
               
               
               Cow position:chr3:77726286-77726579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):276, 108

               
               
               Conread position:782-1093
               
               
               Cow position:chr3:37950010-37949703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):125, 68

               
               
               Conread position:782-1117
               
               
               Cow position:chr3:10931683-10932015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):272, 59

               
               
               Conread position:783-904
               
               
               Cow position:chr3:82888813-82888930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:98
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:783-905
               
               
               Cow position:chr3:4162140-4162018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:96
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-905
               
               
               Cow position:chr3:36120696-36120818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:94
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-908
               
               
               Cow position:chr3:6441475-6441600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-923
               
               
               Cow position:chr3:12667050-12667190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:104
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-958
               
               
               Cow position:chr3:70890078-70890251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:783-959
               
               
               Cow position:chr3:59864367-59864542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:783-966
               
               
               Cow position:chr3:34458054-34457870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):179, 0

               
               
               Conread position:783-975
               
               
               Cow position:chr3:2867948-2867756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:112
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-979
               
               
               Cow position:chr3:55245151-55245347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:152
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-990
               
               
               Cow position:chr3:20888842-20888635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:155
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-998
               
               
               Cow position:chr3:18461326-18461112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:168
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 0

               
               
               Conread position:783-1012
               
               
               Cow position:chr3:36402415-36402646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:170
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):169, 0

               
               
               Conread position:783-1014
               
               
               Cow position:chr3:5886311-5886542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-1015
               
               
               Cow position:chr3:31748471-31748697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:783-1016
               
               
               Cow position:chr3:29644170-29644395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:172
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:783-1016
               
               
               Cow position:chr3:34347268-34347035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:183
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 18

               
               
               Conread position:783-1026
               
               
               Cow position:chr3:14467066-14466822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:175
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):173, 74

               
               
               Conread position:783-1027
               
               
               Cow position:chr3:36594635-36594879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:183
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-1032
               
               
               Cow position:chr3:41082975-41083224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-1035
               
               
               Cow position:chr3:34015154-34015406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-1040
               
               
               Cow position:chr3:19795410-19795153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-1040
               
               
               Cow position:chr3:53518648-53518905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-1052
               
               
               Cow position:chr3:2852669-2852393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:202
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):126, 243

               
               
               Conread position:783-1054
               
               
               Cow position:chr3:32326610-32326343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:196
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):75, 134

               
               
               Conread position:783-1055
               
               
               Cow position:chr3:74852482-74852213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:187
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:783-1056
               
               
               Cow position:chr3:63000546-63000273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-1060
               
               
               Cow position:chr3:24586417-24586140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):253, 92

               
               
               Conread position:783-1060
               
               
               Cow position:chr3:42977772-42977494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1060
               
               
               Cow position:chr3:50461163-50461420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):265, 107

               
               
               Conread position:783-1065
               
               
               Cow position:chr3:23010184-23010467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1066
               
               
               Cow position:chr3:11182135-11181856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:184
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):271, 65

               
               
               Conread position:783-1069
               
               
               Cow position:chr3:46505580-46505867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1070
               
               
               Cow position:chr3:79592957-79593245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:198
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):231, 114

               
               
               Conread position:783-1075
               
               
               Cow position:chr3:28435887-28435594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1075
               
               
               Cow position:chr3:41314890-41315180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:198
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):227, 117

               
               
               Conread position:783-1076
               
               
               Cow position:chr3:45568023-45568316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):178, 107

               
               
               Conread position:783-1076
               
               
               Cow position:chr3:47078802-47078507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):254, 0

               
               
               Conread position:783-1076
               
               
               Cow position:chr3:68889760-68889466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1077
               
               
               Cow position:chr3:227061-226769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 102

               
               
               Conread position:783-1077
               
               
               Cow position:chr3:2904627-2904336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:211
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):68, 129

               
               
               Conread position:783-1077
               
               
               Cow position:chr3:22724957-22724663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:203
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):177, 64

               
               
               Conread position:783-1077
               
               
               Cow position:chr3:32412877-32412582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 18

               
               
               Conread position:783-1077
               
               
               Cow position:chr3:45977314-45977609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 18

               
               
               Conread position:783-1077
               
               
               Cow position:chr3:72389785-72390063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):272, 112

               
               
               Conread position:783-1081
               
               
               Cow position:chr3:37658789-37659095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):88, 116

               
               
               Conread position:783-1082
               
               
               Cow position:chr3:2790563-2790863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):270, 0

               
               
               Conread position:783-1082
               
               
               Cow position:chr3:45692213-45691926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 71

               
               
               Conread position:783-1082
               
               
               Cow position:chr3:61554868-61554568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):136, 37

               
               
               Conread position:783-1083
               
               
               Cow position:chr3:24351525-24351807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):247, 13

               
               
               Conread position:783-1083
               
               
               Cow position:chr3:24638223-24638524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):244, 231

               
               
               Conread position:783-1083
               
               
               Cow position:chr3:28093948-28094250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 128

               
               
               Conread position:783-1084
               
               
               Cow position:chr3:596929-597223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 116

               
               
               Conread position:783-1084
               
               
               Cow position:chr3:6864479-6864774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 129

               
               
               Conread position:783-1084
               
               
               Cow position:chr3:27783488-27783192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 124

               
               
               Conread position:783-1084
               
               
               Cow position:chr3:27866471-27866770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):210, 35

               
               
               Conread position:783-1084
               
               
               Cow position:chr3:31418347-31418650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):233, 87

               
               
               Conread position:783-1084
               
               
               Cow position:chr3:49336010-49336309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:208
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):177, 0

               
               
               Conread position:783-1084
               
               
               Cow position:chr3:49908204-49907919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:219
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):271, 61

               
               
               Conread position:783-1084
               
               
               Cow position:chr3:52689565-52689870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 275

               
               
               Conread position:783-1084
               
               
               Cow position:chr3:57455782-57456072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 44

               
               
               Conread position:783-1084
               
               
               Cow position:chr3:63736201-63736502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):263, 163

               
               
               Conread position:783-1084
               
               
               Cow position:chr3:65177822-65178123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 283

               
               
               Conread position:783-1084
               
               
               Cow position:chr3:66888384-66888082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1084
               
               
               Cow position:chr3:68717896-68717596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 13

               
               
               Conread position:783-1088
               
               
               Cow position:chr3:29324954-29325260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr3:1033674-1033981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr3:2834727-2834420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr3:2866843-2866536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr3:2921073-2921376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 100

               
               
               Conread position:783-1089
               
               
               Cow position:chr3:3653474-3653168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 74

               
               
               Conread position:783-1089
               
               
               Cow position:chr3:3837773-3837474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 18

               
               
               Conread position:783-1089
               
               
               Cow position:chr3:5474350-5474658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):142, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr3:6713821-6714126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 35

               
               
               Conread position:783-1089
               
               
               Cow position:chr3:7246292-7245985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr3:7477109-7476801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):143, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr3:10243473-10243778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 124

               
               
               Conread position:783-1089
               
               
               Cow position:chr3:12253859-12254163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:213
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):73, 161

               
               
               Conread position:783-1089
               
               
               Cow position:chr3:12676817-12676523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr3:13276468-13276163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 36

               
               
               Conread position:783-1089
               
               
               Cow position:chr3:13723901-13723593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):194, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr3:14054085-14054392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 21

               
               
               Conread position:783-1089
               
               
               Cow position:chr3:15416278-15416585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr3:16225689-16225996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr3:18862253-18862559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 146

               
               
               Conread position:783-1089
               
               
               Cow position:chr3:19753916-19753608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr3:19880863-19881168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 88

               
               
               Conread position:783-1089
               
               
               Cow position:chr3:19941703-19942011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr3:21004627-21004931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):263, 230

               
               
               Conread position:783-1089
               
               
               Cow position:chr3:21179445-21179140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):133, 45

               
               
               Conread position:783-1089
               
               
               Cow position:chr3:21593096-21593403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr3:22338720-22339027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr3:23287523-23287216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr3:24263015-24262715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:222
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):129, 6

               
               
               Conread position:783-1089
               
               
               Cow position:chr3:24265014-24265317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):260, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr3:24573349-24573048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 18

               
               
               Conread position:783-1089
               
               
               Cow position:chr3:26743059-26742754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 76

               
               
               Conread position:783-1089
               
               
               Cow position:chr3:30616125-30615818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr3:31021495-31021801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 71

               
               
               Conread position:783-1089
               
               
               Cow position:chr3:31121331-31121018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 151

               
               
               Conread position:783-1089
               
               
               Cow position:chr3:31396210-31396492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):10, 15

               
               
               Conread position:783-1089
               
               
               Cow position:chr3:31770953-31771249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 97

               
               
               Conread position:783-1089
               
               
               Cow position:chr3:32490901-32490594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr3:32620229-32619923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 226

               
               
               Conread position:783-1089
               
               
               Cow position:chr3:34087382-34087079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:213
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):275, 25

               
               
               Conread position:783-1089
               
               
               Cow position:chr3:34504311-34504004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 190

               
               
               Conread position:783-1089
               
               
               Cow position:chr3:36875255-36874942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):172, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr3:37280207-37280514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr3:37627707-37628010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 135

               
               
               Conread position:783-1089
               
               
               Cow position:chr3:37893645-37893950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 194

               
               
               Conread position:783-1089
               
               
               Cow position:chr3:37971856-37972153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 35

               
               
               Conread position:783-1089
               
               
               Cow position:chr3:38095711-38096018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr3:40048701-40049008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):270, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr3:40102035-40101733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr3:40337331-40337027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 177

               
               
               Conread position:783-1089
               
               
               Cow position:chr3:40826209-40826517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):196, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr3:41207785-41207478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr3:42747910-42747603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr3:43190458-43190151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr3:43525927-43525620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr3:44926627-44926932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):133, 81

               
               
               Conread position:783-1089
               
               
               Cow position:chr3:46858471-46858165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 210

               
               
               Conread position:783-1089
               
               
               Cow position:chr3:49463741-49463436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):270, 210

               
               
               Conread position:783-1089
               
               
               Cow position:chr3:49542389-49542082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr3:49563822-49564135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 249

               
               
               Conread position:783-1089
               
               
               Cow position:chr3:49605627-49605323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):189, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr3:49611396-49611089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr3:49998950-49999255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 106

               
               
               Conread position:783-1089
               
               
               Cow position:chr3:50204358-50204684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:235
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr3:50346633-50346942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):139, 30

               
               
               Conread position:783-1089
               
               
               Cow position:chr3:53880455-53880148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):275, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr3:54654369-54654056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 186

               
               
               Conread position:783-1089
               
               
               Cow position:chr3:56102554-56102859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 9

               
               
               Conread position:783-1089
               
               
               Cow position:chr3:56297196-56297503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr3:56337142-56336840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 102

               
               
               Conread position:783-1089
               
               
               Cow position:chr3:56485448-56485141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr3:57481924-57481618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 79

               
               
               Conread position:783-1089
               
               
               Cow position:chr3:57742331-57742632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr3:62882174-62882479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 47

               
               
               Conread position:783-1089
               
               
               Cow position:chr3:63277041-63276745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 18

               
               
               Conread position:783-1089
               
               
               Cow position:chr3:64376897-64376592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 187

               
               
               Conread position:783-1089
               
               
               Cow position:chr3:64653481-64653787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 194

               
               
               Conread position:783-1089
               
               
               Cow position:chr3:64875598-64875892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 18

               
               
               Conread position:783-1089
               
               
               Cow position:chr3:66623025-66623331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 155

               
               
               Conread position:783-1089
               
               
               Cow position:chr3:66969067-66968760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr3:68510524-68510217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr3:68870938-68870631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):275, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr3:69931022-69930715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr3:72603018-72603334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:213
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr3:72632882-72633192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr3:72864225-72863927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):149, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr3:73304318-73304625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:212
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):67, 128

               
               
               Conread position:783-1089
               
               
               Cow position:chr3:74060286-74060588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 74

               
               
               Conread position:783-1089
               
               
               Cow position:chr3:74848353-74848045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):164, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr3:75039030-75038723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr3:76001143-76000842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):269, 180

               
               
               Conread position:783-1089
               
               
               Cow position:chr3:76864243-76864550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr3:77581427-77581717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):141, 55

               
               
               Conread position:783-1089
               
               
               Cow position:chr3:81100892-81101197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 124

               
               
               Conread position:783-1089
               
               
               Cow position:chr3:83767065-83767372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1090
               
               
               Cow position:chr3:66830126-66829819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 37

               
               
               Conread position:783-1094
               
               
               Cow position:chr3:61677357-61677661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):265, 42

               
               
               Conread position:783-1096
               
               
               Cow position:chr3:53413848-53414157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):101, 150

               
               
               Conread position:783-1099
               
               
               Cow position:chr3:56101089-56101393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):191, 83

               
               
               Conread position:783-1106
               
               
               Cow position:chr3:26595854-26596177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):270, 106

               
               
               Conread position:783-1106
               
               
               Cow position:chr3:56645518-56645196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 74

               
               
               Conread position:783-1108
               
               
               Cow position:chr3:16294098-16293771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):133, 128

               
               
               Conread position:783-1108
               
               
               Cow position:chr3:23204861-23204537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 155

               
               
               Conread position:783-1108
               
               
               Cow position:chr3:45185170-45184847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:783-1108
               
               
               Cow position:chr3:56912645-56912972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):252, 20

               
               
               Conread position:783-1108
               
               
               Cow position:chr3:64171042-64171384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:240
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):223, 62

               
               
               Conread position:783-1108
               
               
               Cow position:chr3:70097133-70096799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:230
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):222, 17

               
               
               Conread position:783-1108
               
               
               Cow position:chr3:77426515-77426831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 54

               
               
               Conread position:783-1109
               
               
               Cow position:chr3:18886277-18886598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:227
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):270, 145

               
               
               Conread position:783-1112
               
               
               Cow position:chr3:64684186-64683868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:237
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):239, 25

               
               
               Conread position:783-1113
               
               
               Cow position:chr3:3060671-3060999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:237
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):243, 85

               
               
               Conread position:783-1123
               
               
               Cow position:chr3:22084612-22084274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:232
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):266, 58

               
               
               Conread position:783-1126
               
               
               Cow position:chr3:17938190-17937846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 316

               
               
               Conread position:783-1128
               
               
               Cow position:chr3:65988731-65989077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 18

               
               
               Conread position:783-1137
               
               
               Cow position:chr3:35611966-35612324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 309

               
               
               Conread position:783-1140
               
               
               Cow position:chr3:5446100-5445740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):265, 259

               
               
               Conread position:784-972
               
               
               Cow position:chr3:62794460-62794270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:784-974
               
               
               Cow position:chr3:73415877-73416066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:141
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):33, 23

               
               
               Conread position:784-1042
               
               
               Cow position:chr3:55108772-55108518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):178, 80

               
               
               Conread position:784-1064
               
               
               Cow position:chr3:10370814-10371088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:208
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):123, 101

               
               
               Conread position:784-1077
               
               
               Cow position:chr3:19947035-19947328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 241

               
               
               Conread position:784-1082
               
               
               Cow position:chr3:19108377-19108671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):272, 183

               
               
               Conread position:784-1083
               
               
               Cow position:chr3:29129909-29130208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):269, 185

               
               
               Conread position:784-1083
               
               
               Cow position:chr3:80930439-80930141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 87

               
               
               Conread position:784-1084
               
               
               Cow position:chr3:522934-523227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):270, 86

               
               
               Conread position:784-1085
               
               
               Cow position:chr3:6688624-6688942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:228
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:784-1086
               
               
               Cow position:chr3:61173307-61173610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):270, 0

               
               
               Conread position:784-1089
               
               
               Cow position:chr3:6896656-6896945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 69

               
               
               Conread position:784-1089
               
               
               Cow position:chr3:18353546-18353252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):270, 26

               
               
               Conread position:784-1089
               
               
               Cow position:chr3:19798339-19798033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:784-1089
               
               
               Cow position:chr3:19883283-19883589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 105

               
               
               Conread position:784-1089
               
               
               Cow position:chr3:26566590-26566893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 81

               
               
               Conread position:784-1089
               
               
               Cow position:chr3:26992941-26993245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 9

               
               
               Conread position:784-1089
               
               
               Cow position:chr3:32703346-32703057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):270, 185

               
               
               Conread position:784-1089
               
               
               Cow position:chr3:48096272-48095968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:210
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):247, 111

               
               
               Conread position:784-1089
               
               
               Cow position:chr3:68697152-68696846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):270, 0

               
               
               Conread position:784-1089
               
               
               Cow position:chr3:70323221-70322919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):270, 91

               
               
               Conread position:784-1089
               
               
               Cow position:chr3:77706639-77706944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):272, 206

               
               
               Conread position:785-905
               
               
               Cow position:chr3:35619400-35619519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:98
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:785-1009
               
               
               Cow position:chr3:46752434-46752658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:785-1044
               
               
               Cow position:chr3:15987801-15988060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 59

               
               
               Conread position:785-1076
               
               
               Cow position:chr3:23170379-23170088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 11

               
               
               Conread position:785-1080
               
               
               Cow position:chr3:48034456-48034164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):273, 16

               
               
               Conread position:785-1081
               
               
               Cow position:chr3:43417044-43417329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:200
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):29, 62

               
               
               Conread position:785-1082
               
               
               Cow position:chr3:54568842-54569140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):269, 0

               
               
               Conread position:785-1084
               
               
               Cow position:chr3:2366076-2365783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):269, 83

               
               
               Conread position:785-1084
               
               
               Cow position:chr3:7856239-7856538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):229, 252

               
               
               Conread position:785-1089
               
               
               Cow position:chr3:1740059-1739754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):269, 0

               
               
               Conread position:785-1089
               
               
               Cow position:chr3:2708055-2707750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):272, 0

               
               
               Conread position:785-1089
               
               
               Cow position:chr3:3552138-3552441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):273, 192

               
               
               Conread position:785-1089
               
               
               Cow position:chr3:5951802-5951497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):135, 139

               
               
               Conread position:785-1089
               
               
               Cow position:chr3:20379903-20379598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:785-1089
               
               
               Cow position:chr3:24443280-24442984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):272, 138

               
               
               Conread position:785-1089
               
               
               Cow position:chr3:27222862-27223165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:210
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):45, 147

               
               
               Conread position:785-1089
               
               
               Cow position:chr3:27245874-27245571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):269, 184

               
               
               Conread position:785-1089
               
               
               Cow position:chr3:36171120-36170819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):87, 77

               
               
               Conread position:785-1089
               
               
               Cow position:chr3:39555773-39555469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):269, 287

               
               
               Conread position:785-1089
               
               
               Cow position:chr3:48603065-48603371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):263, 0

               
               
               Conread position:785-1089
               
               
               Cow position:chr3:48845820-48846124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):269, 281

               
               
               Conread position:785-1089
               
               
               Cow position:chr3:54087557-54087247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):229, 266

               
               
               Conread position:785-1089
               
               
               Cow position:chr3:63148822-63148520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 72

               
               
               Conread position:785-1089
               
               
               Cow position:chr3:67545772-67545481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):269, 60

               
               
               Conread position:785-1089
               
               
               Cow position:chr3:74850331-74850028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:216
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):177, 79

               
               
               Conread position:785-1089
               
               
               Cow position:chr3:77549789-77550088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):226, 12

               
               
               Conread position:785-1089
               
               
               Cow position:chr3:78024616-78024317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):272, 220

               
               
               Conread position:785-1108
               
               
               Cow position:chr3:8098166-8098488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):84, 109

               
               
               Conread position:785-1108
               
               
               Cow position:chr3:25689469-25689795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):231, 0

               
               
               Conread position:785-1112
               
               
               Cow position:chr3:48240068-48240394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):269, 108

               
               
               Conread position:786-905
               
               
               Cow position:chr3:36516827-36516708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:97
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:786-933
               
               
               Cow position:chr3:35972918-35973065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):75, 86

               
               
               Conread position:786-1077
               
               
               Cow position:chr3:83290126-83289839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:204
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):284, 84

               
               
               Conread position:786-1084
               
               
               Cow position:chr3:31934518-31934224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):270, 71

               
               
               Conread position:786-1090
               
               
               Cow position:chr3:77084744-77084440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):48, 43

               
               
               Conread position:787-1067
               
               
               Cow position:chr3:76187348-76187625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):226, 0

               
               
               Conread position:787-1089
               
               
               Cow position:chr3:20781610-20781316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 207

               
               
               Conread position:787-1106
               
               
               Cow position:chr3:63239197-63238894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:225
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):267, 58

               
               
               Conread position:788-1089
               
               
               Cow position:chr3:48361755-48362056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 44

               
               
               Conread position:789-1089
               
               
               Cow position:chr3:42994053-42993758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:215
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):73, 119

               
               
               Conread position:790-1108
               
               
               Cow position:chr3:74141094-74140771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:213
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):78, 91

               
               
               Conread position:792-1109
               
               
               Cow position:chr3:22512138-22512451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):241, 11

               
               
               Conread position:795-1089
               
               
               Cow position:chr3:77272972-77272677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):259, 0

               
               
               Conread position:796-1085
               
               
               Cow position:chr3:58128887-58129164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):252, 58

               
               
               Conread position:796-1089
               
               
               Cow position:chr3:7155982-7155688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):258, 0

               
               
               Conread position:797-1077
               
               
               Cow position:chr3:4030581-4030857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:192
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):172, 0

               
               
               Conread position:800-1069
               
               
               Cow position:chr3:40297156-40296886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):238, 113

               
               
               Conread position:800-1108
               
               
               Cow position:chr3:14284563-14284873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):216, 0

               
               
               Conread position:800-1120
               
               
               Cow position:chr3:58034809-58034487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 301

               
               
               Conread position:801-1089
               
               
               Cow position:chr3:5497602-5497321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 0

               
               
               Conread position:802-1002
               
               
               Cow position:chr3:69434187-69433989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):62, 82

               
               
               Conread position:802-1016
               
               
               Cow position:chr3:27921283-27921496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:167
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):29, 161

               
               
               Conread position:802-1025
               
               
               Cow position:chr3:3790441-3790658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):117, 91

               
               
               Conread position:802-1035
               
               
               Cow position:chr3:64025488-64025253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:190
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):149, 0

               
               
               Conread position:802-1037
               
               
               Cow position:chr3:23012059-23012291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):212, 122

               
               
               Conread position:802-1067
               
               
               Cow position:chr3:50941404-50941670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):252, 0

               
               
               Conread position:802-1076
               
               
               Cow position:chr3:38869404-38869681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):255, 0

               
               
               Conread position:802-1077
               
               
               Cow position:chr3:58950293-58950568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):252, 42

               
               
               Conread position:802-1080
               
               
               Cow position:chr3:46014850-46014570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:200
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):131, 42

               
               
               Conread position:802-1081
               
               
               Cow position:chr3:944526-944803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):255, 157

               
               
               Conread position:802-1083
               
               
               Cow position:chr3:66651494-66651225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:194
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):251, 54

               
               
               Conread position:802-1084
               
               
               Cow position:chr3:82931462-82931737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):251, 87

               
               
               Conread position:802-1088
               
               
               Cow position:chr3:29429363-29429081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):158, 112

               
               
               Conread position:802-1089
               
               
               Cow position:chr3:6528823-6529111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):252, 0

               
               
               Conread position:802-1089
               
               
               Cow position:chr3:14679918-14680206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):252, 274

               
               
               Conread position:802-1089
               
               
               Cow position:chr3:20795124-20795412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):252, 0

               
               
               Conread position:802-1089
               
               
               Cow position:chr3:46224726-46225013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:202
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):252, 135

               
               
               Conread position:802-1089
               
               
               Cow position:chr3:47273049-47272760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):255, 0

               
               
               Conread position:802-1089
               
               
               Cow position:chr3:50920867-50921158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 55

               
               
               Conread position:802-1089
               
               
               Cow position:chr3:55373921-55374204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):161, 87

               
               
               Conread position:802-1089
               
               
               Cow position:chr3:60178263-60177982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:201
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:802-1090
               
               
               Cow position:chr3:75165254-75164948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:209
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):104, 177

               
               
               Conread position:802-1108
               
               
               Cow position:chr3:6875442-6875143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:217
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:803-1089
               
               
               Cow position:chr3:56148122-56148411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 92

               
               
               Conread position:804-908
               
               
               Cow position:chr3:27155832-27155936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:89
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:804-1060
               
               
               Cow position:chr3:61277402-61277650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:804-1108
               
               
               Cow position:chr3:15663604-15663306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):250, 100

               
               
               Conread position:804-1108
               
               
               Cow position:chr3:33326213-33326519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 61

               
               
               Conread position:805-1004
               
               
               Cow position:chr3:7354401-7354605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):50, 161

               
               
               Conread position:805-1016
               
               
               Cow position:chr3:73517743-73517954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):203, 21

               
               
               Conread position:805-1036
               
               
               Cow position:chr3:57899843-57900076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:155
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:805-1069
               
               
               Cow position:chr3:58026169-58025912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:184
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):158, 61

               
               
               Conread position:805-1083
               
               
               Cow position:chr3:19831319-19831039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):199, 123

               
               
               Conread position:805-1087
               
               
               Cow position:chr3:43317404-43317123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):244, 166

               
               
               Conread position:805-1089
               
               
               Cow position:chr3:823257-822971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):172, 0

               
               
               Conread position:805-1089
               
               
               Cow position:chr3:49253347-49253630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:206
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):66, 120

               
               
               Conread position:805-1092
               
               
               Cow position:chr3:43084076-43084364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):249, 0

               
               
               Conread position:805-1108
               
               
               Cow position:chr3:37349315-37349015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):157, 59

               
               
               Conread position:805-1118
               
               
               Cow position:chr3:64697663-64697974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):35, 60

               
               
               Conread position:806-1089
               
               
               Cow position:chr3:40344069-40344353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):250, 0

               
               
               Conread position:806-1092
               
               
               Cow position:chr3:12798216-12797929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):247, 0

               
               
               Conread position:806-1108
               
               
               Cow position:chr3:19126108-19126412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:204
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):95, 295

               
               
               Conread position:807-1010
               
               
               Cow position:chr3:55894660-55894863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):114, 103

               
               
               Conread position:808-1089
               
               
               Cow position:chr3:42846190-42846465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 116

               
               
               Conread position:809-1069
               
               
               Cow position:chr3:27689311-27689568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):245, 209

               
               
               Conread position:810-1089
               
               
               Cow position:chr3:24530541-24530820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:198
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):244, 208

               
               
               Conread position:811-1089
               
               
               Cow position:chr3:72175463-72175187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:167
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):243, 118

               
               
               Conread position:811-1108
               
               
               Cow position:chr3:39233430-39233725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):243, 120

               
               
               Conread position:812-1080
               
               
               Cow position:chr3:14881683-14881412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:185
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):55, 45

               
               
               Conread position:812-1087
               
               
               Cow position:chr3:77225576-77225850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):242, 161

               
               
               Conread position:812-1089
               
               
               Cow position:chr3:58952999-58953275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:199
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):242, 98

               
               
               Conread position:813-999
               
               
               Cow position:chr3:57835749-57835563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:813-1034
               
               
               Cow position:chr3:53388759-53388536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):203, 27

               
               
               Conread position:813-1056
               
               
               Cow position:chr3:49429622-49429863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:813-1083
               
               
               Cow position:chr3:49134693-49134423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):244, 12

               
               
               Conread position:813-1084
               
               
               Cow position:chr3:20603010-20602743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:199
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):105, 67

               
               
               Conread position:814-1004
               
               
               Cow position:chr3:51848118-51848308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:137
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:814-1034
               
               
               Cow position:chr3:12754627-12754847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):151, 90

               
               
               Conread position:814-1064
               
               
               Cow position:chr3:14431640-14431398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:190
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:814-1076
               
               
               Cow position:chr3:64317583-64317840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):146, 0

               
               
               Conread position:814-1089
               
               
               Cow position:chr3:12987173-12986897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):240, 0

               
               
               Conread position:814-1089
               
               
               Cow position:chr3:26533152-26532885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:197
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:814-1089
               
               
               Cow position:chr3:33269081-33269350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):243, 136

               
               
               Conread position:814-1089
               
               
               Cow position:chr3:48224219-48223947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):240, 114

               
               
               Conread position:814-1089
               
               
               Cow position:chr3:73636724-73636999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):240, 259

               
               
               Conread position:814-1121
               
               
               Cow position:chr3:49296594-49296900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:203
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):154, 52

               
               
               Conread position:815-1069
               
               
               Cow position:chr3:26751342-26751087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:180
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):240, 0

               
               
               Conread position:815-1087
               
               
               Cow position:chr3:3846113-3845850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):239, 92

               
               
               Conread position:817-1062
               
               
               Cow position:chr3:66736719-66736474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:177
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:817-1077
               
               
               Cow position:chr3:51069055-51068793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):59, 9

               
               
               Conread position:817-1087
               
               
               Cow position:chr3:47690843-47691107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):238, 121

               
               
               Conread position:817-1089
               
               
               Cow position:chr3:82363636-82363904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):237, 66

               
               
               Conread position:818-1084
               
               
               Cow position:chr3:75840140-75839875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):235, 113

               
               
               Conread position:819-1082
               
               
               Cow position:chr3:77447842-77448100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:190
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):239, 88

               
               
               Conread position:819-1089
               
               
               Cow position:chr3:30321097-30321376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:819-1108
               
               
               Cow position:chr3:3983960-3984246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:208
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):97, 91

               
               
               Conread position:820-1068
               
               
               Cow position:chr3:60142869-60143113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:182
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):234, 37

               
               
               Conread position:820-1089
               
               
               Cow position:chr3:52150437-52150167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):234, 0

               
               
               Conread position:820-1089
               
               
               Cow position:chr3:72669713-72669443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):237, 0

               
               
               Conread position:820-1108
               
               
               Cow position:chr3:21222870-21222579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):196, 0

               
               
               Conread position:820-1118
               
               
               Cow position:chr3:57554627-57554922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):234, 18

               
               
               Conread position:821-1090
               
               
               Cow position:chr3:68402820-68402557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):233, 29

               
               
               Conread position:822-1089
               
               
               Cow position:chr3:56153157-56153418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):85, 145

               
               
               Conread position:824-1089
               
               
               Cow position:chr3:6837882-6838148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):234, 0

               
               
               Conread position:826-1016
               
               
               Cow position:chr3:63689035-63688844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):137, 0

               
               
               Conread position:829-1089
               
               
               Cow position:chr3:72105804-72105540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):136, 195

               
               
               Conread position:830-1060
               
               
               Cow position:chr3:54765868-54766099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):186, 62

               
               
               Conread position:830-1095
               
               
               Cow position:chr3:52202537-52202795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):121, 139

               
               
               Conread position:833-1047
               
               
               Cow position:chr3:36614367-36614153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:166
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:833-1089
               
               
               Cow position:chr3:70914405-70914144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:192
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:834-1076
               
               
               Cow position:chr3:45311656-45311898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:183
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):220, 13

               
               
               Conread position:834-1077
               
               
               Cow position:chr3:27547583-27547342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:182
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):109, 54

               
               
               Conread position:834-1089
               
               
               Cow position:chr3:48215610-48215362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:834-1108
               
               
               Cow position:chr3:35885251-35884983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:196
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):128, 91

               
               
               Conread position:838-1084
               
               
               Cow position:chr3:14258613-14258853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:174
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):81, 72

               
               
               Conread position:838-1088
               
               
               Cow position:chr3:15570311-15570554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:177
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):83, 49

               
               
               Conread position:844-1084
               
               
               Cow position:chr3:38528938-38528704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:179
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):210, 44

               
               
               Conread position:844-1089
               
               
               Cow position:chr3:19112101-19111857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):189, 174

               
               
               Conread position:849-1089
               
               
               Cow position:chr3:52664278-52664516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:188
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):65, 124

               
               
               Conread position:850-1089
               
               
               Cow position:chr3:30938379-30938615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:184
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):204, 77

               
               
               Conread position:850-1089
               
               
               Cow position:chr3:40521061-40520821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:179
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):204, 0

               
               
               Conread position:850-1089
               
               
               Cow position:chr3:83700440-83700201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):71, 35

               
               
               Conread position:853-1089
               
               
               Cow position:chr3:11384196-11384437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:854-1089
               
               
               Cow position:chr3:24455633-24455399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:190
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):200, 21

               
               
               Conread position:856-1084
               
               
               Cow position:chr3:63202130-63202356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:163
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):26, 66

               
               
               Conread position:857-1084
               
               
               Cow position:chr3:52451302-52451529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):136, 106

               
               
               Conread position:857-1089
               
               
               Cow position:chr3:65473316-65473549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):197, 0

               
               
               Conread position:858-1075
               
               
               Cow position:chr3:44100935-44101148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:859-1089
               
               
               Cow position:chr3:34027987-34027756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:168
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):198, 0

               
               
               Conread position:871-1089
               
               
               Cow position:chr3:79979288-79979066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):101, 7

               
               
               Conread position:872-1003
               
               
               Cow position:chr3:44668475-44668344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:99
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:872-1089
               
               
               Cow position:chr3:39856364-39856582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:166
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):182, 0

               
               
               Conread position:873-1089
               
               
               Cow position:chr3:13035594-13035377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:164
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):181, 0

               
               
               Conread position:874-1077
               
               
               Cow position:chr3:11417449-11417653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:162
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 0

               
               
               Conread position:874-1089
               
               
               Cow position:chr3:13312103-13311887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):180, 0

               
               
               Conread position:874-1089
               
               
               Cow position:chr3:35508754-35508971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):159, 0

               
               
               Conread position:874-1108
               
               
               Cow position:chr3:13115533-13115299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:170
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):180, 55

               
               
               Conread position:876-1089
               
               
               Cow position:chr3:78519952-78520166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:164
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):178, 0

               
               
               Conread position:877-1089
               
               
               Cow position:chr3:38496697-38496915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):65, 54

               
               
               Conread position:878-1089
               
               
               Cow position:chr3:44537227-44537024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):176, 33

               
               
               Conread position:882-1083
               
               
               Cow position:chr3:84198705-84198895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:884-1089
               
               
               Cow position:chr3:68273753-68273959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:161
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):170, 0

               
               
               Conread position:887-1089
               
               
               Cow position:chr3:48272695-48272900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:160
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):143, 0

               
               
               Conread position:887-1089
               
               
               Cow position:chr3:48527473-48527678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):25, 152

               
               
               Conread position:890-1108
               
               
               Cow position:chr3:31224198-31224416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):164, 128

               
               
               Conread position:895-1077
               
               
               Cow position:chr3:41056864-41057041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):159, 86

               
               
               Conread position:896-1016
               
               
               Cow position:chr3:62882852-62882732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:95
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:896-1089
               
               
               Cow position:chr3:302156-302350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):158, 0

               
               
               Conread position:897-1089
               
               
               Cow position:chr3:20475439-20475633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:900-1089
               
               
               Cow position:chr3:41019385-41019195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):154, 0

               
               
               Conread position:901-1089
               
               
               Cow position:chr3:65877040-65877226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):16, 9

               
               
               Conread position:904-1069
               
               
               Cow position:chr3:51235510-51235347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):149, 22

               
               
               Conread position:914-1085
               
               
               Cow position:chr3:38862678-38862844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):140, 110

               
               
               Conread position:914-1089
               
               
               Cow position:chr3:31051480-31051304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):142, 0

               
               
               Conread position:914-1089
               
               
               Cow position:chr3:39327491-39327667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):140, 0

               
               
               Conread position:914-1106
               
               
               Cow position:chr3:37021465-37021276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):140, 90

               
               
               Conread position:914-1108
               
               
               Cow position:chr3:47986384-47986577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):141, 64

               
               
               Conread position:916-1089
               
               
               Cow position:chr3:4039986-4039813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):138, 52

               
               
               Conread position:916-1089
               
               
               Cow position:chr3:45615285-45615455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):138, 117

               
               
               Conread position:919-1087
               
               
               Cow position:chr3:46899726-46899892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):136, 117

               
               
               Conread position:920-1040
               
               
               Cow position:chr3:22281522-22281402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:93
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:920-1076
               
               
               Cow position:chr3:11949737-11949887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:119
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:920-1077
               
               
               Cow position:chr3:77466642-77466800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:121
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):138, 0

               
               
               Conread position:920-1084
               
               
               Cow position:chr3:30908756-30908917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):134, 42

               
               
               Conread position:920-1087
               
               
               Cow position:chr3:7773051-7772883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):134, 0

               
               
               Conread position:920-1089
               
               
               Cow position:chr3:25056638-25056811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:131
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:920-1108
               
               
               Cow position:chr3:27454984-27454795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):49, 28

               
               
               Conread position:920-1110
               
               
               Cow position:chr3:36671672-36671480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:130
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):138, 0

               
               
               Conread position:920-1118
               
               
               Cow position:chr3:34557421-34557221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):134, 0

               
               
               Conread position:922-1089
               
               
               Cow position:chr3:33125307-33125136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:923-1083
               
               
               Cow position:chr3:24356327-24356487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):132, 30

               
               
               Conread position:927-1108
               
               
               Cow position:chr3:2508372-2508188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):57, 130

               
               
               Conread position:927-1108
               
               
               Cow position:chr3:49454573-49454753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:927-1108
               
               
               Cow position:chr3:49732839-49732658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):127, 172

               
               
               Conread position:928-1061
               
               
               Cow position:chr3:60185226-60185093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:101
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:928-1067
               
               
               Cow position:chr3:4161780-4161641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:928-1076
               
               
               Cow position:chr3:21000132-20999984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:111
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:928-1083
               
               
               Cow position:chr3:35918521-35918678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):130, 0

               
               
               Conread position:928-1084
               
               
               Cow position:chr3:2074740-2074896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):126, 65

               
               
               Conread position:928-1089
               
               
               Cow position:chr3:6442026-6442187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:125
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):125, 40

               
               
               Conread position:928-1089
               
               
               Cow position:chr3:11781990-11781828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:119
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):129, 0

               
               
               Conread position:928-1089
               
               
               Cow position:chr3:19215873-19216035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:124
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):129, 0

               
               
               Conread position:928-1089
               
               
               Cow position:chr3:49930792-49930954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:928-1089
               
               
               Cow position:chr3:56696805-56696967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):130, 0

               
               
               Conread position:928-1108
               
               
               Cow position:chr3:36121132-36121313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):126, 164

               
               
               Conread position:929-1089
               
               
               Cow position:chr3:42508251-42508090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):125, 0

               
               
               Conread position:931-1089
               
               
               Cow position:chr3:32412526-32412367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:932-1089
               
               
               Cow position:chr3:14212351-14212509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:935-1089
               
               
               Cow position:chr3:23497794-23497639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:935-1089
               
               
               Cow position:chr3:35619521-35619676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:936-1069
               
               
               Cow position:chr3:37448171-37448304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:103
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):118, 33

               
               
               Conread position:938-1089
               
               
               Cow position:chr3:14863851-14864003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:116
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):116, 0

               
               
               Conread position:939-1089
               
               
               Cow position:chr3:45237522-45237369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:945-1089
               
               
               Cow position:chr3:31423153-31423008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:947-1108
               
               
               Cow position:chr3:30351251-30351413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:125
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:951-1093
               
               
               Cow position:chr3:51255879-51256022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:956-1089
               
               
               Cow position:chr3:53674236-53674102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:102
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:957-1089
               
               
               Cow position:chr3:4191951-4191818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:958-1089
               
               
               Cow position:chr3:45947829-45947697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:104
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:961-1084
               
               
               Cow position:chr3:2432663-2432539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:101
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:963-1089
               
               
               Cow position:chr3:79668099-79668229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:102
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:964-1089
               
               
               Cow position:chr3:32768783-32768909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:102
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:964-1089
               
               
               Cow position:chr3:73451321-73451195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:101
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:965-1089
               
               
               Cow position:chr3:55245537-55245662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:969-1089
               
               
               Cow position:chr3:45675780-45675659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:94
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:980-1089
               
               
               Cow position:chr3:52257506-52257396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:90
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:758-1089
               
               
               Cow position:chr4:12840542-12840865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):296, 112

               
               
               Conread position:778-905
               
               
               Cow position:chr4:2003812-2003939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:97
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:782-908
               
               
               Cow position:chr4:2227361-2227235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:98
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:782-994
               
               
               Cow position:chr4:5486773-5486561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:782-1004
               
               
               Cow position:chr4:44920856-44921078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:148
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):10, 22

               
               
               Conread position:782-1036
               
               
               Cow position:chr4:20681117-20681370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:177
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):28, 18

               
               
               Conread position:782-1076
               
               
               Cow position:chr4:43028505-43028226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):134, 50

               
               
               Conread position:782-1077
               
               
               Cow position:chr4:1239802-1239506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):272, 0

               
               
               Conread position:782-1077
               
               
               Cow position:chr4:18301620-18301329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):272, 187

               
               
               Conread position:782-1089
               
               
               Cow position:chr4:4673961-4673654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 18

               
               
               Conread position:782-1089
               
               
               Cow position:chr4:27336829-27337136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):257, 204

               
               
               Conread position:782-1089
               
               
               Cow position:chr4:29604858-29604550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):272, 0

               
               
               Conread position:783-893
               
               
               Cow position:chr4:3355343-3355234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:90
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:783-905
               
               
               Cow position:chr4:49744393-49744515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:103
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-908
               
               
               Cow position:chr4:10121806-10121681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:99
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-935
               
               
               Cow position:chr4:25129394-25129546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:117
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-939
               
               
               Cow position:chr4:12584006-12583850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-945
               
               
               Cow position:chr4:16735001-16734839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-950
               
               
               Cow position:chr4:56013997-56013830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-959
               
               
               Cow position:chr4:14818313-14818136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:124
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:783-965
               
               
               Cow position:chr4:55510217-55510034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):179, 0

               
               
               Conread position:783-971
               
               
               Cow position:chr4:28174245-28174057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-974
               
               
               Cow position:chr4:45268795-45268605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):177, 0

               
               
               Conread position:783-996
               
               
               Cow position:chr4:62557951-62557738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:167
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-997
               
               
               Cow position:chr4:22904324-22904539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):124, 92

               
               
               Conread position:783-998
               
               
               Cow position:chr4:30578344-30578559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:168
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-1008
               
               
               Cow position:chr4:11390868-11390649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):138, 43

               
               
               Conread position:783-1016
               
               
               Cow position:chr4:35867834-35868073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:174
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:783-1017
               
               
               Cow position:chr4:13464430-13464663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):198, 0

               
               
               Conread position:783-1026
               
               
               Cow position:chr4:50761757-50761521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:783-1032
               
               
               Cow position:chr4:21362132-21362383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:181
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):180, 104

               
               
               Conread position:783-1035
               
               
               Cow position:chr4:30474051-30474303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-1036
               
               
               Cow position:chr4:8935231-8935486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:783-1047
               
               
               Cow position:chr4:8768374-8768634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:190
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:783-1049
               
               
               Cow position:chr4:532662-532928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-1056
               
               
               Cow position:chr4:16641229-16641485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:201
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:783-1060
               
               
               Cow position:chr4:20184115-20184382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:211
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):42, 81

               
               
               Conread position:783-1060
               
               
               Cow position:chr4:67382904-67383182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):136, 149

               
               
               Conread position:783-1066
               
               
               Cow position:chr4:63000754-63001038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1068
               
               
               Cow position:chr4:44733243-44733529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1069
               
               
               Cow position:chr4:55519884-55520174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:783-1076
               
               
               Cow position:chr4:33070224-33069928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1076
               
               
               Cow position:chr4:34176375-34176084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):263, 74

               
               
               Conread position:783-1076
               
               
               Cow position:chr4:42103062-42103350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):138, 27

               
               
               Conread position:783-1076
               
               
               Cow position:chr4:54758616-54758328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 30

               
               
               Conread position:783-1077
               
               
               Cow position:chr4:4418666-4418958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 51

               
               
               Conread position:783-1077
               
               
               Cow position:chr4:6863614-6863319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1082
               
               
               Cow position:chr4:38180383-38180677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):270, 73

               
               
               Conread position:783-1083
               
               
               Cow position:chr4:15874018-15873716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):185, 62

               
               
               Conread position:783-1083
               
               
               Cow position:chr4:17834230-17833921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:216
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):233, 0

               
               
               Conread position:783-1083
               
               
               Cow position:chr4:26745138-26745437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 253

               
               
               Conread position:783-1083
               
               
               Cow position:chr4:55272771-55273070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 74

               
               
               Conread position:783-1084
               
               
               Cow position:chr4:1187737-1187434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:205
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):112, 87

               
               
               Conread position:783-1084
               
               
               Cow position:chr4:1935908-1935602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:213
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):50, 80

               
               
               Conread position:783-1084
               
               
               Cow position:chr4:2350099-2349794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 165

               
               
               Conread position:783-1084
               
               
               Cow position:chr4:6487750-6487448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1084
               
               
               Cow position:chr4:10823249-10822950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):170, 57

               
               
               Conread position:783-1084
               
               
               Cow position:chr4:16061913-16062207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 100

               
               
               Conread position:783-1084
               
               
               Cow position:chr4:43897090-43896788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 18

               
               
               Conread position:783-1084
               
               
               Cow position:chr4:57987361-57987663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1084
               
               
               Cow position:chr4:58882766-58882466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:205
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):148, 0

               
               
               Conread position:783-1084
               
               
               Cow position:chr4:64875406-64875107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):133, 102

               
               
               Conread position:783-1084
               
               
               Cow position:chr4:67393844-67394146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1085
               
               
               Cow position:chr4:47055809-47055508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 213

               
               
               Conread position:783-1086
               
               
               Cow position:chr4:5047913-5047610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 130

               
               
               Conread position:783-1087
               
               
               Cow position:chr4:14795068-14795357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):271, 35

               
               
               Conread position:783-1088
               
               
               Cow position:chr4:18336340-18336027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):197, 0

               
               
               Conread position:783-1088
               
               
               Cow position:chr4:26467865-26468155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 71

               
               
               Conread position:783-1089
               
               
               Cow position:chr4:33468-33168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:205
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):272, 187

               
               
               Conread position:783-1089
               
               
               Cow position:chr4:358502-358809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 104

               
               
               Conread position:783-1089
               
               
               Cow position:chr4:3069539-3069841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 210

               
               
               Conread position:783-1089
               
               
               Cow position:chr4:3128432-3128739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr4:3169898-3170206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):270, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr4:3449413-3449720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr4:5579175-5578868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):270, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr4:6000826-6000509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):160, 236

               
               
               Conread position:783-1089
               
               
               Cow position:chr4:6266596-6266290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):265, 194

               
               
               Conread position:783-1089
               
               
               Cow position:chr4:6547652-6547959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr4:7215159-7214853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):133, 127

               
               
               Conread position:783-1089
               
               
               Cow position:chr4:7779017-7779324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr4:8648697-8649001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):150, 37

               
               
               Conread position:783-1089
               
               
               Cow position:chr4:8677419-8677725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 92

               
               
               Conread position:783-1089
               
               
               Cow position:chr4:9005115-9004808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr4:9040563-9040870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr4:9356855-9357162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr4:10045150-10044843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr4:10424109-10424416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr4:12238610-12238310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):194, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr4:17033884-17033577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr4:17234644-17234945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 63

               
               
               Conread position:783-1089
               
               
               Cow position:chr4:17586518-17586212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):10, 58

               
               
               Conread position:783-1089
               
               
               Cow position:chr4:17821147-17821454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr4:17876586-17876881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr4:18266709-18267016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr4:18813592-18813286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 27

               
               
               Conread position:783-1089
               
               
               Cow position:chr4:19206314-19206619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):271, 110

               
               
               Conread position:783-1089
               
               
               Cow position:chr4:20242773-20243080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):133, 124

               
               
               Conread position:783-1089
               
               
               Cow position:chr4:20657443-20657137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 235

               
               
               Conread position:783-1089
               
               
               Cow position:chr4:21298164-21297857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr4:21341690-21341997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr4:21843901-21843596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 109

               
               
               Conread position:783-1089
               
               
               Cow position:chr4:22316346-22316649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 18

               
               
               Conread position:783-1089
               
               
               Cow position:chr4:23304724-23304417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr4:25596869-25596561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr4:27177445-27177752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr4:27288483-27288180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 18

               
               
               Conread position:783-1089
               
               
               Cow position:chr4:27518755-27518448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr4:27881509-27881816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):272, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr4:27891690-27891997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):272, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr4:29530840-29530533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr4:31485365-31485058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr4:32214772-32215078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):275, 17

               
               
               Conread position:783-1089
               
               
               Cow position:chr4:33496178-33496486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr4:36026653-36026346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr4:36898994-36899301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr4:37785919-37786226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr4:40217455-40217762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr4:40697850-40697543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr4:41473213-41472906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr4:41957379-41957685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 204

               
               
               Conread position:783-1089
               
               
               Cow position:chr4:41961514-41961820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 204

               
               
               Conread position:783-1089
               
               
               Cow position:chr4:43317032-43316725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr4:43883711-43884017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 164

               
               
               Conread position:783-1089
               
               
               Cow position:chr4:44778576-44778269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr4:46711979-46711682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 124

               
               
               Conread position:783-1089
               
               
               Cow position:chr4:48732294-48732600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 254

               
               
               Conread position:783-1089
               
               
               Cow position:chr4:54147791-54147489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 59

               
               
               Conread position:783-1089
               
               
               Cow position:chr4:54811244-54810923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):158, 59

               
               
               Conread position:783-1089
               
               
               Cow position:chr4:55669861-55670173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 18

               
               
               Conread position:783-1089
               
               
               Cow position:chr4:58291358-58291665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 18

               
               
               Conread position:783-1089
               
               
               Cow position:chr4:61241899-61242207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr4:62907404-62907097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr4:64799736-64800036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 91

               
               
               Conread position:783-1089
               
               
               Cow position:chr4:65890415-65890717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 54

               
               
               Conread position:783-1089
               
               
               Cow position:chr4:67681365-67681053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 80

               
               
               Conread position:783-1094
               
               
               Cow position:chr4:20027905-20027593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):223, 83

               
               
               Conread position:783-1106
               
               
               Cow position:chr4:44593758-44593451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:223
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):38, 102

               
               
               Conread position:783-1108
               
               
               Cow position:chr4:10884256-10884583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):173, 317

               
               
               Conread position:783-1108
               
               
               Cow position:chr4:18096995-18096667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1108
               
               
               Cow position:chr4:30507813-30508142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 44

               
               
               Conread position:783-1108
               
               
               Cow position:chr4:41190543-41190220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 42

               
               
               Conread position:783-1108
               
               
               Cow position:chr4:44957794-44957468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):270, 0

               
               
               Conread position:783-1108
               
               
               Cow position:chr4:47263393-47263720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):233, 0

               
               
               Conread position:783-1108
               
               
               Cow position:chr4:54189408-54189713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:239
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):271, 100

               
               
               Conread position:783-1108
               
               
               Cow position:chr4:65430898-65431224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):267, 0

               
               
               Conread position:783-1111
               
               
               Cow position:chr4:28835179-28835508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 241

               
               
               Conread position:783-1140
               
               
               Cow position:chr4:5611382-5611025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):133, 177

               
               
               Conread position:784-908
               
               
               Cow position:chr4:161782-161906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:99
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:784-994
               
               
               Cow position:chr4:24021845-24021638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):137, 80

               
               
               Conread position:784-1065
               
               
               Cow position:chr4:42400364-42400082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):15, 35

               
               
               Conread position:784-1066
               
               
               Cow position:chr4:1436875-1436578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:784-1068
               
               
               Cow position:chr4:61984741-61984464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):269, 57

               
               
               Conread position:784-1080
               
               
               Cow position:chr4:22074454-22074160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):270, 103

               
               
               Conread position:784-1084
               
               
               Cow position:chr4:60651210-60651512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:784-1086
               
               
               Cow position:chr4:43841354-43841053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:784-1088
               
               
               Cow position:chr4:19254346-19254644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:784-1089
               
               
               Cow position:chr4:1047633-1047340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):273, 43

               
               
               Conread position:784-1089
               
               
               Cow position:chr4:3284739-3284434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 148

               
               
               Conread position:784-1089
               
               
               Cow position:chr4:9105070-9105370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:198
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):60, 71

               
               
               Conread position:784-1089
               
               
               Cow position:chr4:17776143-17775844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 81

               
               
               Conread position:784-1089
               
               
               Cow position:chr4:27293267-27292966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 120

               
               
               Conread position:784-1089
               
               
               Cow position:chr4:27539287-27539590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):270, 184

               
               
               Conread position:784-1089
               
               
               Cow position:chr4:39840332-39840629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):137, 29

               
               
               Conread position:784-1108
               
               
               Cow position:chr4:25878033-25878366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:233
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):70, 35

               
               
               Conread position:784-1123
               
               
               Cow position:chr4:20606246-20606587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 54

               
               
               Conread position:784-1124
               
               
               Cow position:chr4:23452395-23452052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 17

               
               
               Conread position:785-978
               
               
               Cow position:chr4:16606766-16606959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:156
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):189, 100

               
               
               Conread position:785-994
               
               
               Cow position:chr4:54972085-54972293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:160
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:785-1001
               
               
               Cow position:chr4:25245718-25245936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:144
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):162, 0

               
               
               Conread position:785-1048
               
               
               Cow position:chr4:14141728-14141984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:191
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:785-1060
               
               
               Cow position:chr4:64038868-64039135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:207
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):79, 127

               
               
               Conread position:785-1076
               
               
               Cow position:chr4:21973062-21972780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):271, 72

               
               
               Conread position:785-1084
               
               
               Cow position:chr4:48029481-48029777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):272, 40

               
               
               Conread position:785-1084
               
               
               Cow position:chr4:54931980-54931687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):269, 28

               
               
               Conread position:785-1087
               
               
               Cow position:chr4:1028601-1028309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):206, 139

               
               
               Conread position:785-1087
               
               
               Cow position:chr4:67601047-67600746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 110

               
               
               Conread position:785-1088
               
               
               Cow position:chr4:48502474-48502769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):5, 54

               
               
               Conread position:785-1089
               
               
               Cow position:chr4:606230-606529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):273, 0

               
               
               Conread position:785-1089
               
               
               Cow position:chr4:16362821-16363124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 63

               
               
               Conread position:785-1089
               
               
               Cow position:chr4:17920334-17920030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:785-1089
               
               
               Cow position:chr4:19236689-19236993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):269, 170

               
               
               Conread position:785-1089
               
               
               Cow position:chr4:33021013-33020708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):269, 0

               
               
               Conread position:785-1089
               
               
               Cow position:chr4:62222775-62223069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):55, 94

               
               
               Conread position:785-1095
               
               
               Cow position:chr4:18100286-18099974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):106, 27

               
               
               Conread position:785-1116
               
               
               Cow position:chr4:41977026-41976700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:227
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):226, 100

               
               
               Conread position:786-1006
               
               
               Cow position:chr4:33645962-33645754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:786-1089
               
               
               Cow position:chr4:37702876-37703179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 10

               
               
               Conread position:786-1108
               
               
               Cow position:chr4:4184804-4185121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:240
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):147, 37

               
               
               Conread position:786-1118
               
               
               Cow position:chr4:31562609-31562278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 124

               
               
               Conread position:787-1088
               
               
               Cow position:chr4:66174697-66174400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 174

               
               
               Conread position:788-1089
               
               
               Cow position:chr4:6444927-6444640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):265, 36

               
               
               Conread position:789-1089
               
               
               Cow position:chr4:3474320-3474600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):265, 55

               
               
               Conread position:793-1089
               
               
               Cow position:chr4:23646579-23646282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):261, 0

               
               
               Conread position:795-1083
               
               
               Cow position:chr4:52695895-52696179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:190
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):221, 5

               
               
               Conread position:795-1090
               
               
               Cow position:chr4:36669220-36669504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:796-1074
               
               
               Cow position:chr4:33144647-33144926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:181
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):14, 19

               
               
               Conread position:797-1089
               
               
               Cow position:chr4:8673368-8673662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:216
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):116, 185

               
               
               Conread position:797-1089
               
               
               Cow position:chr4:11108446-11108150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 107

               
               
               Conread position:797-1099
               
               
               Cow position:chr4:5873738-5874035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):198, 50

               
               
               Conread position:797-1106
               
               
               Cow position:chr4:35929121-35929423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:220
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):257, 10

               
               
               Conread position:799-978
               
               
               Cow position:chr4:59557823-59557645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:130
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):11, 16

               
               
               Conread position:799-1094
               
               
               Cow position:chr4:43899485-43899201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):254, 131

               
               
               Conread position:800-1122
               
               
               Cow position:chr4:67649418-67649101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):208, 146

               
               
               Conread position:801-1084
               
               
               Cow position:chr4:14736676-14736961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):13, 25

               
               
               Conread position:801-1089
               
               
               Cow position:chr4:61596065-61595782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):253, 186

               
               
               Conread position:802-1048
               
               
               Cow position:chr4:15814864-15814617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):234, 0

               
               
               Conread position:802-1089
               
               
               Cow position:chr4:4379027-4379308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):255, 185

               
               
               Conread position:802-1089
               
               
               Cow position:chr4:18004351-18004638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):252, 191

               
               
               Conread position:802-1089
               
               
               Cow position:chr4:26911417-26911705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:196
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):61, 110

               
               
               Conread position:802-1089
               
               
               Cow position:chr4:47751962-47752255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):160, 0

               
               
               Conread position:802-1108
               
               
               Cow position:chr4:6613527-6613219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:206
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):204, 69

               
               
               Conread position:803-1089
               
               
               Cow position:chr4:12606228-12605947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:210
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):23, 105

               
               
               Conread position:803-1106
               
               
               Cow position:chr4:45954323-45954626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:211
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):253, 27

               
               
               Conread position:804-1016
               
               
               Cow position:chr4:9796949-9796738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:165
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:804-1084
               
               
               Cow position:chr4:60625885-60625609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):244, 124

               
               
               Conread position:804-1089
               
               
               Cow position:chr4:2264073-2263785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 0

               
               
               Conread position:805-1077
               
               
               Cow position:chr4:44900914-44901170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):253, 105

               
               
               Conread position:805-1089
               
               
               Cow position:chr4:6168327-6168047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:210
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):158, 52

               
               
               Conread position:805-1089
               
               
               Cow position:chr4:42331082-42330797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):252, 0

               
               
               Conread position:805-1095
               
               
               Cow position:chr4:9820788-9821077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:208
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):249, 42

               
               
               Conread position:807-1016
               
               
               Cow position:chr4:13328314-13328514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:808-1089
               
               
               Cow position:chr4:26886281-26885999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):246, 0

               
               
               Conread position:810-1036
               
               
               Cow position:chr4:1500426-1500202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:810-1077
               
               
               Cow position:chr4:65843245-65842981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:197
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):232, 100

               
               
               Conread position:810-1089
               
               
               Cow position:chr4:65918334-65918613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):248, 137

               
               
               Conread position:813-1050
               
               
               Cow position:chr4:23438118-23437884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:813-1089
               
               
               Cow position:chr4:14918705-14918981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):241, 21

               
               
               Conread position:813-1089
               
               
               Cow position:chr4:39645402-39645676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:202
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):139, 41

               
               
               Conread position:813-1089
               
               
               Cow position:chr4:42862837-42863113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:193
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):49, 216

               
               
               Conread position:814-1038
               
               
               Cow position:chr4:44380939-44380711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:814-1063
               
               
               Cow position:chr4:25971613-25971860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):239, 43

               
               
               Conread position:814-1069
               
               
               Cow position:chr4:49768911-49769166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):238, 201

               
               
               Conread position:814-1089
               
               
               Cow position:chr4:43236447-43236177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):203, 27

               
               
               Conread position:815-1089
               
               
               Cow position:chr4:68108927-68108654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):238, 26

               
               
               Conread position:816-1089
               
               
               Cow position:chr4:3252900-3252620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:816-1089
               
               
               Cow position:chr4:45654524-45654248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:195
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:816-1089
               
               
               Cow position:chr4:65207806-65207535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):21, 41

               
               
               Conread position:817-1083
               
               
               Cow position:chr4:49419403-49419138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):145, 8

               
               
               Conread position:817-1089
               
               
               Cow position:chr4:34712470-34712741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):240, 54

               
               
               Conread position:818-1081
               
               
               Cow position:chr4:38909162-38909416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):134, 142

               
               
               Conread position:819-1088
               
               
               Cow position:chr4:29093402-29093129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):90, 154

               
               
               Conread position:820-998
               
               
               Cow position:chr4:9399150-9398978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):5, 15

               
               
               Conread position:820-1089
               
               
               Cow position:chr4:38932017-38932283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):149, 93

               
               
               Conread position:821-1083
               
               
               Cow position:chr4:23525242-23525499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:195
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):233, 140

               
               
               Conread position:822-1077
               
               
               Cow position:chr4:50977207-50977453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):217, 88

               
               
               Conread position:824-1089
               
               
               Cow position:chr4:38583539-38583805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):230, 0

               
               
               Conread position:825-1084
               
               
               Cow position:chr4:1353272-1353020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:179
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):20, 49

               
               
               Conread position:827-1069
               
               
               Cow position:chr4:44647089-44646843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):206, 178

               
               
               Conread position:832-1090
               
               
               Cow position:chr4:10541565-10541308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:168
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):31, 46

               
               
               Conread position:833-1089
               
               
               Cow position:chr4:10135534-10135278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:189
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):221, 54

               
               
               Conread position:835-1089
               
               
               Cow position:chr4:1927966-1927711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):219, 0

               
               
               Conread position:838-1075
               
               
               Cow position:chr4:31635964-31635732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):87, 52

               
               
               Conread position:838-1083
               
               
               Cow position:chr4:11100922-11100677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:838-1089
               
               
               Cow position:chr4:68386019-68386250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:839-1060
               
               
               Cow position:chr4:106197-105977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):130, 15

               
               
               Conread position:839-1089
               
               
               Cow position:chr4:20630117-20630362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:840-1089
               
               
               Cow position:chr4:34700874-34700627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 85

               
               
               Conread position:842-1089
               
               
               Cow position:chr4:7422990-7423238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):136, 31

               
               
               Conread position:844-1089
               
               
               Cow position:chr4:33831752-33831506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):210, 0

               
               
               Conread position:844-1108
               
               
               Cow position:chr4:26548149-26548415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:205
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):127, 22

               
               
               Conread position:846-1089
               
               
               Cow position:chr4:47750008-47750252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):64, 115

               
               
               Conread position:847-1076
               
               
               Cow position:chr4:43761059-43761288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):207, 50

               
               
               Conread position:849-1085
               
               
               Cow position:chr4:65581196-65581435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:179
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:850-1067
               
               
               Cow position:chr4:1356255-1356039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):198, 141

               
               
               Conread position:850-1089
               
               
               Cow position:chr4:13140730-13140497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:183
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):130, 197

               
               
               Conread position:850-1089
               
               
               Cow position:chr4:35144861-35144621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:187
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):204, 0

               
               
               Conread position:850-1089
               
               
               Cow position:chr4:42405390-42405150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):204, 0

               
               
               Conread position:854-1089
               
               
               Cow position:chr4:33563644-33563874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:857-1082
               
               
               Cow position:chr4:16967589-16967363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:857-1084
               
               
               Cow position:chr4:25823320-25823093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):180, 154

               
               
               Conread position:857-1089
               
               
               Cow position:chr4:12454666-12454888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:171
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):197, 110

               
               
               Conread position:857-1089
               
               
               Cow position:chr4:13254363-13254589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):201, 117

               
               
               Conread position:858-1089
               
               
               Cow position:chr4:62161480-62161249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):196, 10

               
               
               Conread position:860-1060
               
               
               Cow position:chr4:16833001-16833200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):193, 120

               
               
               Conread position:860-1085
               
               
               Cow position:chr4:3971083-3971309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):194, 0

               
               
               Conread position:874-1044
               
               
               Cow position:chr4:19452275-19452108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:874-1089
               
               
               Cow position:chr4:4463657-4463873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:168
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 0

               
               
               Conread position:874-1089
               
               
               Cow position:chr4:38153594-38153380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):179, 98

               
               
               Conread position:874-1089
               
               
               Cow position:chr4:60855468-60855684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:170
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 0

               
               
               Conread position:875-1084
               
               
               Cow position:chr4:25982995-25983190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):173, 43

               
               
               Conread position:875-1089
               
               
               Cow position:chr4:962877-962664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):68, 97

               
               
               Conread position:875-1089
               
               
               Cow position:chr4:27873512-27873298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:149
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):148, 85

               
               
               Conread position:875-1096
               
               
               Cow position:chr4:4086652-4086432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:181
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:876-1084
               
               
               Cow position:chr4:9712443-9712646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):179, 33

               
               
               Conread position:880-1084
               
               
               Cow position:chr4:3849315-3849518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:160
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):82, 92

               
               
               Conread position:880-1089
               
               
               Cow position:chr4:19736740-19736950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):174, 0

               
               
               Conread position:880-1108
               
               
               Cow position:chr4:68809834-68810063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):174, 0

               
               
               Conread position:881-1089
               
               
               Cow position:chr4:34182011-34181812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):12, 31

               
               
               Conread position:883-1108
               
               
               Cow position:chr4:15463708-15463483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):171, 11

               
               
               Conread position:884-1089
               
               
               Cow position:chr4:10122128-10122330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):26, 138

               
               
               Conread position:885-1084
               
               
               Cow position:chr4:29528541-29528345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):163, 53

               
               
               Conread position:885-1089
               
               
               Cow position:chr4:30540948-30540743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:160
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):169, 0

               
               
               Conread position:886-1034
               
               
               Cow position:chr4:25224346-25224198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:886-1089
               
               
               Cow position:chr4:23150937-23150733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):36, 46

               
               
               Conread position:886-1118
               
               
               Cow position:chr4:3355216-3354984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):171, 11

               
               
               Conread position:887-1089
               
               
               Cow position:chr4:65199080-65198877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):167, 0

               
               
               Conread position:892-1089
               
               
               Cow position:chr4:18330812-18331010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:154
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):162, 0

               
               
               Conread position:894-1089
               
               
               Cow position:chr4:2003820-2003630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):160, 95

               
               
               Conread position:895-1089
               
               
               Cow position:chr4:59783404-59783600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):61, 103

               
               
               Conread position:900-1081
               
               
               Cow position:chr4:41037562-41037744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:148
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):146, 150

               
               
               Conread position:900-1089
               
               
               Cow position:chr4:51761259-51761069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):154, 0

               
               
               Conread position:901-1089
               
               
               Cow position:chr4:19108319-19108129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:142
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:902-1108
               
               
               Cow position:chr4:48496413-48496620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):145, 153

               
               
               Conread position:914-1089
               
               
               Cow position:chr4:24139620-24139797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):140, 0

               
               
               Conread position:915-1089
               
               
               Cow position:chr4:11192703-11192879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:916-1084
               
               
               Cow position:chr4:3962138-3961969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):141, 0

               
               
               Conread position:920-1084
               
               
               Cow position:chr4:36811775-36811940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):134, 0

               
               
               Conread position:920-1084
               
               
               Cow position:chr4:66670423-66670264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:126
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):115, 25

               
               
               Conread position:921-1089
               
               
               Cow position:chr4:33629277-33629108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):133, 0

               
               
               Conread position:922-1089
               
               
               Cow position:chr4:47928930-47929097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):136, 77

               
               
               Conread position:922-1089
               
               
               Cow position:chr4:52085913-52086080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:131
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):132, 45

               
               
               Conread position:928-1084
               
               
               Cow position:chr4:6035265-6035108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):129, 0

               
               
               Conread position:928-1089
               
               
               Cow position:chr4:2227002-2226839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:928-1089
               
               
               Cow position:chr4:54098993-54098831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:929-1089
               
               
               Cow position:chr4:47949576-47949415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):125, 0

               
               
               Conread position:930-1089
               
               
               Cow position:chr4:28854920-28855086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):124, 15

               
               
               Conread position:932-1077
               
               
               Cow position:chr4:9039967-9039821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:932-1089
               
               
               Cow position:chr4:15617460-15617618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:933-1084
               
               
               Cow position:chr4:16734706-16734556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):121, 39

               
               
               Conread position:934-1089
               
               
               Cow position:chr4:36754553-36754709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:942-1089
               
               
               Cow position:chr4:41131371-41131223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:120
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:946-1089
               
               
               Cow position:chr4:26399570-26399714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):108, 87

               
               
               Conread position:946-1089
               
               
               Cow position:chr4:62454207-62454063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:115
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:950-1108
               
               
               Cow position:chr4:63639337-63639178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:956-1077
               
               
               Cow position:chr4:15055599-15055721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:100
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:962-1092
               
               
               Cow position:chr4:47115632-47115762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:102
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):92, 10

               
               
               Conread position:963-1089
               
               
               Cow position:chr4:62962562-62962436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:101
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:770-1076
               
               
               Cow position:chr5:31634124-31634439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:225
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):11, 149

               
               
               Conread position:781-1084
               
               
               Cow position:chr5:710436-710132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):273, 0

               
               
               Conread position:782-996
               
               
               Cow position:chr5:73220466-73220251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:141
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):182, 0

               
               
               Conread position:782-1003
               
               
               Cow position:chr5:38286003-38286222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):91, 15

               
               
               Conread position:782-1026
               
               
               Cow position:chr5:27196363-27196119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:182
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:782-1078
               
               
               Cow position:chr5:49489717-49490013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):274, 248

               
               
               Conread position:782-1083
               
               
               Cow position:chr5:819271-819584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:210
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):72, 136

               
               
               Conread position:782-1089
               
               
               Cow position:chr5:9235684-9235381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:211
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):272, 28

               
               
               Conread position:782-1089
               
               
               Cow position:chr5:18901051-18901358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 19

               
               
               Conread position:782-1089
               
               
               Cow position:chr5:40791557-40791860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):168, 0

               
               
               Conread position:782-1089
               
               
               Cow position:chr5:48575098-48574795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):272, 223

               
               
               Conread position:782-1089
               
               
               Cow position:chr5:70348123-70348431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):59, 21

               
               
               Conread position:782-1090
               
               
               Cow position:chr5:46671331-46671636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):174, 92

               
               
               Conread position:782-1118
               
               
               Cow position:chr5:46779232-46779570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):272, 310

               
               
               Conread position:782-1130
               
               
               Cow position:chr5:72346383-72346049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:230
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):272, 89

               
               
               Conread position:783-897
               
               
               Cow position:chr5:74036235-74036349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:91
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-908
               
               
               Cow position:chr5:27549742-27549617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:99
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):74, 108

               
               
               Conread position:783-931
               
               
               Cow position:chr5:10513556-10513408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:113
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-938
               
               
               Cow position:chr5:1382587-1382742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-939
               
               
               Cow position:chr5:35207058-35206903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:783-939
               
               
               Cow position:chr5:50688530-50688685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:117
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):149, 0

               
               
               Conread position:783-947
               
               
               Cow position:chr5:3201069-3201233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-961
               
               
               Cow position:chr5:41293527-41293700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):79, 87

               
               
               Conread position:783-977
               
               
               Cow position:chr5:29827085-29827279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-977
               
               
               Cow position:chr5:59083512-59083318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-979
               
               
               Cow position:chr5:34218842-34218649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):166, 83

               
               
               Conread position:783-994
               
               
               Cow position:chr5:29432871-29432664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:783-996
               
               
               Cow position:chr5:11153741-11153529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:161
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):145, 0

               
               
               Conread position:783-999
               
               
               Cow position:chr5:445235-445450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:168
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:783-1002
               
               
               Cow position:chr5:46002932-46002712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:167
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):179, 0

               
               
               Conread position:783-1016
               
               
               Cow position:chr5:23684663-23684432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):182, 18

               
               
               Conread position:783-1016
               
               
               Cow position:chr5:70127498-70127722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:163
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:783-1018
               
               
               Cow position:chr5:2706170-2705935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):80, 223

               
               
               Conread position:783-1025
               
               
               Cow position:chr5:41980191-41980427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):188, 0

               
               
               Conread position:783-1026
               
               
               Cow position:chr5:5716336-5716094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:183
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):147, 0

               
               
               Conread position:783-1026
               
               
               Cow position:chr5:18704377-18704622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):225, 0

               
               
               Conread position:783-1027
               
               
               Cow position:chr5:37084156-37083912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-1030
               
               
               Cow position:chr5:12729420-12729175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 18

               
               
               Conread position:783-1031
               
               
               Cow position:chr5:42043612-42043858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:783-1032
               
               
               Cow position:chr5:28948023-28947773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):150, 102

               
               
               Conread position:783-1032
               
               
               Cow position:chr5:31284813-31285052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):158, 127

               
               
               Conread position:783-1034
               
               
               Cow position:chr5:18119761-18119510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-1035
               
               
               Cow position:chr5:1641074-1640822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-1035
               
               
               Cow position:chr5:15676633-15676886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):194, 0

               
               
               Conread position:783-1036
               
               
               Cow position:chr5:8177826-8178078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:190
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:783-1036
               
               
               Cow position:chr5:57614474-57614221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):138, 127

               
               
               Conread position:783-1038
               
               
               Cow position:chr5:13807956-13807706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:149
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):214, 65

               
               
               Conread position:783-1040
               
               
               Cow position:chr5:21522015-21521756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:190
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):227, 222

               
               
               Conread position:783-1040
               
               
               Cow position:chr5:43989787-43990033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):225, 74

               
               
               Conread position:783-1044
               
               
               Cow position:chr5:412992-412732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):240, 0

               
               
               Conread position:783-1047
               
               
               Cow position:chr5:54695084-54694821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:183
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):253, 148

               
               
               Conread position:783-1048
               
               
               Cow position:chr5:5859676-5859948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:783-1050
               
               
               Cow position:chr5:41524554-41524300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:783-1052
               
               
               Cow position:chr5:12679863-12679597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:783-1053
               
               
               Cow position:chr5:7141383-7141124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:783-1053
               
               
               Cow position:chr5:28222507-28222253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:783-1053
               
               
               Cow position:chr5:58244078-58243809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:783-1059
               
               
               Cow position:chr5:8997305-8997025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):62, 265

               
               
               Conread position:783-1059
               
               
               Cow position:chr5:10813925-10814200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):221, 0

               
               
               Conread position:783-1060
               
               
               Cow position:chr5:48409743-48409466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:188
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-1067
               
               
               Cow position:chr5:60428-60145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:195
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):233, 116

               
               
               Conread position:783-1069
               
               
               Cow position:chr5:32954044-32954331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1069
               
               
               Cow position:chr5:56932099-56931825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 87

               
               
               Conread position:783-1076
               
               
               Cow position:chr5:24644151-24643851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:213
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):84, 131

               
               
               Conread position:783-1076
               
               
               Cow position:chr5:31751072-31751351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:215
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:783-1077
               
               
               Cow position:chr5:10299185-10299480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1077
               
               
               Cow position:chr5:14655442-14655144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):26, 32

               
               
               Conread position:783-1077
               
               
               Cow position:chr5:23957609-23957314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 18

               
               
               Conread position:783-1077
               
               
               Cow position:chr5:42745494-42745786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):127, 66

               
               
               Conread position:783-1077
               
               
               Cow position:chr5:45180371-45180076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1077
               
               
               Cow position:chr5:54928202-54927907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1077
               
               
               Cow position:chr5:54930530-54930235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1077
               
               
               Cow position:chr5:59278858-59279151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:205
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):180, 0

               
               
               Conread position:783-1077
               
               
               Cow position:chr5:68337779-68337479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):200, 100

               
               
               Conread position:783-1081
               
               
               Cow position:chr5:52605906-52605609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:206
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):271, 198

               
               
               Conread position:783-1083
               
               
               Cow position:chr5:10542953-10542652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:210
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1083
               
               
               Cow position:chr5:10921561-10921863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):133, 128

               
               
               Conread position:783-1083
               
               
               Cow position:chr5:54622339-54622634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):271, 14

               
               
               Conread position:783-1083
               
               
               Cow position:chr5:58013086-58012786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):121, 181

               
               
               Conread position:783-1083
               
               
               Cow position:chr5:60446218-60445918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:212
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):139, 92

               
               
               Conread position:783-1083
               
               
               Cow position:chr5:73444120-73444419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):270, 93

               
               
               Conread position:783-1083
               
               
               Cow position:chr5:73457890-73458181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:193
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):287, 84

               
               
               Conread position:783-1084
               
               
               Cow position:chr5:17646353-17646066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:213
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):233, 61

               
               
               Conread position:783-1084
               
               
               Cow position:chr5:41229325-41229028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 81

               
               
               Conread position:783-1084
               
               
               Cow position:chr5:47560844-47560542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1084
               
               
               Cow position:chr5:48225855-48225559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:210
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):93, 126

               
               
               Conread position:783-1084
               
               
               Cow position:chr5:49117634-49117332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):158, 106

               
               
               Conread position:783-1084
               
               
               Cow position:chr5:49755608-49755308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):222, 88

               
               
               Conread position:783-1084
               
               
               Cow position:chr5:54721371-54721674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 56

               
               
               Conread position:783-1084
               
               
               Cow position:chr5:64845544-64845246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 188

               
               
               Conread position:783-1085
               
               
               Cow position:chr5:62160200-62159904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:215
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):271, 25

               
               
               Conread position:783-1087
               
               
               Cow position:chr5:57336696-57336391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1088
               
               
               Cow position:chr5:4349277-4348965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:219
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):74, 70

               
               
               Conread position:783-1088
               
               
               Cow position:chr5:37379806-37380110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 144

               
               
               Conread position:783-1089
               
               
               Cow position:chr5:294982-295289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr5:443592-443285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr5:1339205-1338897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):233, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr5:2203674-2203367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr5:2917181-2917486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 283

               
               
               Conread position:783-1089
               
               
               Cow position:chr5:3501410-3501104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 74

               
               
               Conread position:783-1089
               
               
               Cow position:chr5:3788945-3789252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 18

               
               
               Conread position:783-1089
               
               
               Cow position:chr5:3970242-3970549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr5:4016150-4015848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 164

               
               
               Conread position:783-1089
               
               
               Cow position:chr5:4387901-4388203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 18

               
               
               Conread position:783-1089
               
               
               Cow position:chr5:4434787-4434480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr5:5105942-5106248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr5:5925242-5924945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):254, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr5:6152115-6151808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr5:6455946-6455639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr5:6585743-6585429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):158, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr5:6615575-6615269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 152

               
               
               Conread position:783-1089
               
               
               Cow position:chr5:6772285-6772592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr5:7395967-7396272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 102

               
               
               Conread position:783-1089
               
               
               Cow position:chr5:9003393-9003086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):275, 283

               
               
               Conread position:783-1089
               
               
               Cow position:chr5:10066833-10066526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr5:10854110-10853808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr5:11632268-11631961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr5:12133319-12133618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 51

               
               
               Conread position:783-1089
               
               
               Cow position:chr5:14636861-14636554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr5:15454513-15454799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr5:15761652-15761346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr5:18249776-18250077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 222

               
               
               Conread position:783-1089
               
               
               Cow position:chr5:18558685-18558380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):133, 121

               
               
               Conread position:783-1089
               
               
               Cow position:chr5:18667024-18667331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 132

               
               
               Conread position:783-1089
               
               
               Cow position:chr5:19979198-19978890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 107

               
               
               Conread position:783-1089
               
               
               Cow position:chr5:21188939-21189245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 52

               
               
               Conread position:783-1089
               
               
               Cow position:chr5:23353473-23353765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:223
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):271, 17

               
               
               Conread position:783-1089
               
               
               Cow position:chr5:23829452-23829150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 135

               
               
               Conread position:783-1089
               
               
               Cow position:chr5:24101367-24101674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr5:24298731-24299037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):133, 57

               
               
               Conread position:783-1089
               
               
               Cow position:chr5:26057846-26058145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:213
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):85, 247

               
               
               Conread position:783-1089
               
               
               Cow position:chr5:26076484-26076177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr5:27490677-27490999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):78, 178

               
               
               Conread position:783-1089
               
               
               Cow position:chr5:28331900-28331600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:200
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):274, 47

               
               
               Conread position:783-1089
               
               
               Cow position:chr5:29634146-29634453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr5:29742839-29742533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 90

               
               
               Conread position:783-1089
               
               
               Cow position:chr5:30157077-30157384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr5:31120489-31120182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr5:32755726-32755420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 18

               
               
               Conread position:783-1089
               
               
               Cow position:chr5:37424443-37424751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:220
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):285, 155

               
               
               Conread position:783-1089
               
               
               Cow position:chr5:37610224-37609918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 74

               
               
               Conread position:783-1089
               
               
               Cow position:chr5:37625578-37625883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 189

               
               
               Conread position:783-1089
               
               
               Cow position:chr5:37735092-37735400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr5:38662049-38662356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr5:40897614-40897327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:206
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):271, 82

               
               
               Conread position:783-1089
               
               
               Cow position:chr5:41066742-41067049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr5:41391447-41391753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 105

               
               
               Conread position:783-1089
               
               
               Cow position:chr5:42282888-42283194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):272, 49

               
               
               Conread position:783-1089
               
               
               Cow position:chr5:42507477-42507782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):272, 74

               
               
               Conread position:783-1089
               
               
               Cow position:chr5:46666791-46667098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr5:46735559-46735252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr5:47471098-47471417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:231
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):133, 81

               
               
               Conread position:783-1089
               
               
               Cow position:chr5:47697477-47697182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr5:48025987-48026293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 229

               
               
               Conread position:783-1089
               
               
               Cow position:chr5:48805733-48805427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 167

               
               
               Conread position:783-1089
               
               
               Cow position:chr5:49221775-49221469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 221

               
               
               Conread position:783-1089
               
               
               Cow position:chr5:49521428-49521728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr5:49970556-49970863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr5:50675870-50675563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr5:51166590-51166285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 79

               
               
               Conread position:783-1089
               
               
               Cow position:chr5:51745940-51746248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):194, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr5:52823489-52823183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 235

               
               
               Conread position:783-1089
               
               
               Cow position:chr5:53076150-53075846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):252, 13

               
               
               Conread position:783-1089
               
               
               Cow position:chr5:54362015-54362322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr5:54786390-54786084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 61

               
               
               Conread position:783-1089
               
               
               Cow position:chr5:55683587-55683891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:201
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):137, 15

               
               
               Conread position:783-1089
               
               
               Cow position:chr5:58191634-58191942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr5:58771152-58770846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 172

               
               
               Conread position:783-1089
               
               
               Cow position:chr5:59064162-59064468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 128

               
               
               Conread position:783-1089
               
               
               Cow position:chr5:59146092-59146401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr5:64779290-64778978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):259, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr5:66909821-66910128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr5:69519322-69519621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr5:72856591-72856898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1090
               
               
               Cow position:chr5:2976503-2976811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1090
               
               
               Cow position:chr5:46685893-46685590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):272, 79

               
               
               Conread position:783-1095
               
               
               Cow position:chr5:30294036-30294339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 201

               
               
               Conread position:783-1095
               
               
               Cow position:chr5:53834371-53834683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 310

               
               
               Conread position:783-1106
               
               
               Cow position:chr5:30582052-30582366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):177, 251

               
               
               Conread position:783-1106
               
               
               Cow position:chr5:58003955-58004277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 31

               
               
               Conread position:783-1108
               
               
               Cow position:chr5:28015767-28016091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:223
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):270, 213

               
               
               Conread position:783-1108
               
               
               Cow position:chr5:31916365-31916667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 55

               
               
               Conread position:783-1108
               
               
               Cow position:chr5:41952357-41952035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 285

               
               
               Conread position:783-1108
               
               
               Cow position:chr5:52830063-52829741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 277

               
               
               Conread position:783-1108
               
               
               Cow position:chr5:54124809-54125143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 154

               
               
               Conread position:783-1114
               
               
               Cow position:chr5:44482322-44482652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 125

               
               
               Conread position:783-1118
               
               
               Cow position:chr5:31098535-31098193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):233, 88

               
               
               Conread position:783-1124
               
               
               Cow position:chr5:30844546-30844888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):308, 250

               
               
               Conread position:783-1124
               
               
               Cow position:chr5:39245569-39245237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:235
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):233, 175

               
               
               Conread position:783-1126
               
               
               Cow position:chr5:6840504-6840158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 100

               
               
               Conread position:783-1126
               
               
               Cow position:chr5:44709662-44709326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 100

               
               
               Conread position:783-1128
               
               
               Cow position:chr5:26348771-26348428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):7, 12

               
               
               Conread position:783-1140
               
               
               Cow position:chr5:9091701-9091344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):270, 148

               
               
               Conread position:784-937
               
               
               Cow position:chr5:58000406-58000553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:784-1033
               
               
               Cow position:chr5:4755009-4754761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:189
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):144, 0

               
               
               Conread position:784-1035
               
               
               Cow position:chr5:39448714-39448466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:784-1076
               
               
               Cow position:chr5:62377109-62377385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:214
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):273, 84

               
               
               Conread position:784-1077
               
               
               Cow position:chr5:23754626-23754337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:196
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):47, 144

               
               
               Conread position:784-1083
               
               
               Cow position:chr5:4963660-4963362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):270, 87

               
               
               Conread position:784-1083
               
               
               Cow position:chr5:10840751-10840450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 26

               
               
               Conread position:784-1089
               
               
               Cow position:chr5:25232423-25232125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 19

               
               
               Conread position:784-1089
               
               
               Cow position:chr5:26466364-26466663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:784-1089
               
               
               Cow position:chr5:32965344-32965041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 80

               
               
               Conread position:784-1089
               
               
               Cow position:chr5:57984123-57983819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):262, 129

               
               
               Conread position:785-925
               
               
               Cow position:chr5:42676006-42676143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:106
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:785-968
               
               
               Cow position:chr5:34472455-34472274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):136, 83

               
               
               Conread position:785-997
               
               
               Cow position:chr5:15361884-15362094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):184, 0

               
               
               Conread position:785-1025
               
               
               Cow position:chr5:45702778-45703019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:186
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 120

               
               
               Conread position:785-1035
               
               
               Cow position:chr5:58149895-58149654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:785-1053
               
               
               Cow position:chr5:32089074-32088807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:785-1056
               
               
               Cow position:chr5:32165198-32164930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:185
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:785-1076
               
               
               Cow position:chr5:38379051-38378762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:199
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:785-1077
               
               
               Cow position:chr5:6031704-6032001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):270, 78

               
               
               Conread position:785-1077
               
               
               Cow position:chr5:26625096-26624802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):141, 43

               
               
               Conread position:785-1084
               
               
               Cow position:chr5:34524528-34524217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):39, 105

               
               
               Conread position:785-1086
               
               
               Cow position:chr5:47755687-47755997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):208, 0

               
               
               Conread position:785-1087
               
               
               Cow position:chr5:12502453-12502144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):74, 25

               
               
               Conread position:785-1089
               
               
               Cow position:chr5:25901747-25901450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):136, 53

               
               
               Conread position:785-1089
               
               
               Cow position:chr5:47360938-47361240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):269, 208

               
               
               Conread position:785-1089
               
               
               Cow position:chr5:58198729-58199034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):269, 0

               
               
               Conread position:785-1089
               
               
               Cow position:chr5:62435845-62436147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):264, 188

               
               
               Conread position:785-1108
               
               
               Cow position:chr5:34191642-34191967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 41

               
               
               Conread position:785-1108
               
               
               Cow position:chr5:34526122-34526441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:229
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):171, 59

               
               
               Conread position:786-1077
               
               
               Cow position:chr5:15316449-15316740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:205
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):101, 166

               
               
               Conread position:786-1081
               
               
               Cow position:chr5:25928977-25928682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):268, 94

               
               
               Conread position:786-1089
               
               
               Cow position:chr5:22554854-22555160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):196, 55

               
               
               Conread position:786-1089
               
               
               Cow position:chr5:63312797-63312494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):249, 244

               
               
               Conread position:786-1098
               
               
               Cow position:chr5:27178368-27178682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:222
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):78, 177

               
               
               Conread position:787-1118
               
               
               Cow position:chr5:6986764-6986431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):267, 305

               
               
               Conread position:788-1127
               
               
               Cow position:chr5:3628089-3627752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):256, 37

               
               
               Conread position:790-1034
               
               
               Cow position:chr5:46796410-46796657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):70, 183

               
               
               Conread position:790-1084
               
               
               Cow position:chr5:4437118-4437414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:199
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):215, 25

               
               
               Conread position:790-1089
               
               
               Cow position:chr5:13258326-13258625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):264, 254

               
               
               Conread position:793-1084
               
               
               Cow position:chr5:67654055-67654345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):200, 0

               
               
               Conread position:793-1126
               
               
               Cow position:chr5:10080493-10080825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:214
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):158, 84

               
               
               Conread position:794-1108
               
               
               Cow position:chr5:68485148-68485444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:211
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):16, 25

               
               
               Conread position:795-1089
               
               
               Cow position:chr5:73486168-73485875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):262, 59

               
               
               Conread position:796-940
               
               
               Cow position:chr5:54454165-54454310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):114, 27

               
               
               Conread position:796-1089
               
               
               Cow position:chr5:27690726-27691013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:208
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):258, 92

               
               
               Conread position:796-1089
               
               
               Cow position:chr5:51684904-51684597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 114

               
               
               Conread position:797-1074
               
               
               Cow position:chr5:50604618-50604341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 93

               
               
               Conread position:797-1089
               
               
               Cow position:chr5:3441066-3441344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:208
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:797-1089
               
               
               Cow position:chr5:6189629-6189921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:201
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:798-1089
               
               
               Cow position:chr5:11357858-11358150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):256, 0

               
               
               Conread position:799-1084
               
               
               Cow position:chr5:57869833-57869558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:192
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):234, 11

               
               
               Conread position:800-1007
               
               
               Cow position:chr5:46706603-46706807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:802-1066
               
               
               Cow position:chr5:49131930-49132207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:199
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):69, 117

               
               
               Conread position:802-1080
               
               
               Cow position:chr5:45838397-45838112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):64, 107

               
               
               Conread position:802-1083
               
               
               Cow position:chr5:1229542-1229820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):177, 136

               
               
               Conread position:802-1084
               
               
               Cow position:chr5:2959011-2959293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):208, 102

               
               
               Conread position:802-1084
               
               
               Cow position:chr5:57364045-57363761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):167, 242

               
               
               Conread position:802-1089
               
               
               Cow position:chr5:7276570-7276856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):113, 108

               
               
               Conread position:802-1089
               
               
               Cow position:chr5:12921135-12921422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 112

               
               
               Conread position:802-1089
               
               
               Cow position:chr5:14543564-14543277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):252, 179

               
               
               Conread position:802-1089
               
               
               Cow position:chr5:16126782-16127069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:203
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):256, 66

               
               
               Conread position:802-1089
               
               
               Cow position:chr5:22857890-22857610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):203, 48

               
               
               Conread position:802-1089
               
               
               Cow position:chr5:24633303-24633015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):252, 0

               
               
               Conread position:802-1089
               
               
               Cow position:chr5:27655485-27655768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:207
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):67, 54

               
               
               Conread position:802-1089
               
               
               Cow position:chr5:46817366-46817078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):252, 0

               
               
               Conread position:802-1089
               
               
               Cow position:chr5:49565314-49565596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):158, 0

               
               
               Conread position:802-1089
               
               
               Cow position:chr5:59770783-59771071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 217

               
               
               Conread position:802-1089
               
               
               Cow position:chr5:61232073-61231789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):252, 36

               
               
               Conread position:803-997
               
               
               Cow position:chr5:28026194-28026386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):165, 0

               
               
               Conread position:803-1083
               
               
               Cow position:chr5:49154700-49154437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):221, 50

               
               
               Conread position:803-1084
               
               
               Cow position:chr5:48534593-48534876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:201
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):186, 157

               
               
               Conread position:803-1126
               
               
               Cow position:chr5:54784125-54784453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):7, 12

               
               
               Conread position:804-1054
               
               
               Cow position:chr5:63200035-63200286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:183
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):38, 135

               
               
               Conread position:804-1108
               
               
               Cow position:chr5:28571291-28571591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:211
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):16, 66

               
               
               Conread position:805-1052
               
               
               Cow position:chr5:53944568-53944813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:805-1089
               
               
               Cow position:chr5:13531160-13530881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):102, 165

               
               
               Conread position:805-1089
               
               
               Cow position:chr5:45284868-45284580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:200
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):57, 102

               
               
               Conread position:806-1076
               
               
               Cow position:chr5:21185589-21185321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):154, 26

               
               
               Conread position:806-1084
               
               
               Cow position:chr5:29256471-29256193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):248, 231

               
               
               Conread position:806-1089
               
               
               Cow position:chr5:34670343-34670064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):248, 36

               
               
               Conread position:807-1012
               
               
               Cow position:chr5:34905463-34905663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):114, 61

               
               
               Conread position:807-1089
               
               
               Cow position:chr5:18119234-18118951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):247, 0

               
               
               Conread position:809-1089
               
               
               Cow position:chr5:46626528-46626252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):153, 31

               
               
               Conread position:810-1001
               
               
               Cow position:chr5:41468333-41468521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:810-1064
               
               
               Cow position:chr5:24219890-24220143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:186
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):244, 9

               
               
               Conread position:811-1108
               
               
               Cow position:chr5:5937036-5937349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:220
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):99, 135

               
               
               Conread position:812-1089
               
               
               Cow position:chr5:6125415-6125138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):242, 6

               
               
               Conread position:812-1089
               
               
               Cow position:chr5:23233240-23233507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:195
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):109, 16

               
               
               Conread position:813-1013
               
               
               Cow position:chr5:31559089-31559286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):138, 37

               
               
               Conread position:813-1084
               
               
               Cow position:chr5:55833094-55832816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):109, 74

               
               
               Conread position:813-1089
               
               
               Cow position:chr5:31709046-31709324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:814-1089
               
               
               Cow position:chr5:3695112-3695377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:814-1108
               
               
               Cow position:chr5:14631514-14631222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):240, 24

               
               
               Conread position:815-1088
               
               
               Cow position:chr5:44358405-44358677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:183
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):45, 64

               
               
               Conread position:815-1089
               
               
               Cow position:chr5:8479040-8479314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:193
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):239, 112

               
               
               Conread position:817-1083
               
               
               Cow position:chr5:35446865-35446599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:194
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):45, 231

               
               
               Conread position:817-1089
               
               
               Cow position:chr5:2699422-2699149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):237, 0

               
               
               Conread position:817-1089
               
               
               Cow position:chr5:57920672-57920944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:818-1137
               
               
               Cow position:chr5:16960665-16960353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:206
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):236, 70

               
               
               Conread position:819-1048
               
               
               Cow position:chr5:68591575-68591803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):43, 19

               
               
               Conread position:820-1084
               
               
               Cow position:chr5:51942410-51942668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):202, 34

               
               
               Conread position:820-1084
               
               
               Cow position:chr5:51947363-51947621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):202, 34

               
               
               Conread position:821-1089
               
               
               Cow position:chr5:51068972-51069230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:177
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):233, 29

               
               
               Conread position:825-1016
               
               
               Cow position:chr5:58462495-58462686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:825-1089
               
               
               Cow position:chr5:33776008-33775744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):229, 208

               
               
               Conread position:825-1089
               
               
               Cow position:chr5:50202237-50201974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:178
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):126, 160

               
               
               Conread position:826-1076
               
               
               Cow position:chr5:21785647-21785394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:163
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):207, 0

               
               
               Conread position:826-1108
               
               
               Cow position:chr5:29458683-29458959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 101

               
               
               Conread position:827-1089
               
               
               Cow position:chr5:70401646-70401906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):129, 30

               
               
               Conread position:828-1089
               
               
               Cow position:chr5:39935852-39936110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):226, 11

               
               
               Conread position:829-1089
               
               
               Cow position:chr5:14905288-14905027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):225, 0

               
               
               Conread position:830-1089
               
               
               Cow position:chr5:24239877-24240132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:182
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):157, 108

               
               
               Conread position:833-1056
               
               
               Cow position:chr5:6735860-6735638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:170
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:835-1077
               
               
               Cow position:chr5:15723555-15723316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):219, 133

               
               
               Conread position:837-1089
               
               
               Cow position:chr5:54136867-54136614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):217, 0

               
               
               Conread position:838-1089
               
               
               Cow position:chr5:38848813-38848561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):216, 0

               
               
               Conread position:838-1095
               
               
               Cow position:chr5:61330564-61330308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):80, 42

               
               
               Conread position:840-1089
               
               
               Cow position:chr5:14782449-14782203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):211, 22

               
               
               Conread position:841-1084
               
               
               Cow position:chr5:27173498-27173729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:173
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):78, 25

               
               
               Conread position:841-1084
               
               
               Cow position:chr5:29768826-29769078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:846-1085
               
               
               Cow position:chr5:25912512-25912754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:182
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:849-1089
               
               
               Cow position:chr5:34558926-34559161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):13, 111

               
               
               Conread position:850-1083
               
               
               Cow position:chr5:64958988-64958761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):188, 80

               
               
               Conread position:850-1084
               
               
               Cow position:chr5:71737898-71738133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):204, 0

               
               
               Conread position:854-1068
               
               
               Cow position:chr5:46649896-46650106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):66, 77

               
               
               Conread position:856-1108
               
               
               Cow position:chr5:65597220-65597474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:857-1089
               
               
               Cow position:chr5:17026869-17027101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:173
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):197, 208

               
               
               Conread position:857-1089
               
               
               Cow position:chr5:34196360-34196589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:857-1089
               
               
               Cow position:chr5:34299681-34299916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:184
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:857-1089
               
               
               Cow position:chr5:41954494-41954267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):201, 71

               
               
               Conread position:858-1091
               
               
               Cow position:chr5:41357044-41356804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):102, 200

               
               
               Conread position:862-1089
               
               
               Cow position:chr5:3544104-3544332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):195, 0

               
               
               Conread position:872-1001
               
               
               Cow position:chr5:59877325-59877453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:98
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:872-1084
               
               
               Cow position:chr5:5682705-5682492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):45, 35

               
               
               Conread position:872-1089
               
               
               Cow position:chr5:46676419-46676637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:167
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):185, 0

               
               
               Conread position:874-1034
               
               
               Cow position:chr5:38737644-38737803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):16, 73

               
               
               Conread position:874-1077
               
               
               Cow position:chr5:24577244-24577448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:158
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):179, 0

               
               
               Conread position:874-1089
               
               
               Cow position:chr5:1059759-1059543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:169
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 0

               
               
               Conread position:874-1089
               
               
               Cow position:chr5:23667374-23667161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):180, 43

               
               
               Conread position:874-1092
               
               
               Cow position:chr5:46470934-46470717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):106, 33

               
               
               Conread position:874-1108
               
               
               Cow position:chr5:20108219-20107984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:183
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 0

               
               
               Conread position:875-1087
               
               
               Cow position:chr5:6572430-6572214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:875-1093
               
               
               Cow position:chr5:62759328-62759109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):183, 0

               
               
               Conread position:878-1108
               
               
               Cow position:chr5:10262470-10262232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):132, 5

               
               
               Conread position:879-1089
               
               
               Cow position:chr5:55630877-55631088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:159
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):178, 0

               
               
               Conread position:881-1084
               
               
               Cow position:chr5:26135458-26135248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):135, 0

               
               
               Conread position:892-1089
               
               
               Cow position:chr5:13630668-13630470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):162, 0

               
               
               Conread position:892-1089
               
               
               Cow position:chr5:34683534-34683336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:155
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):162, 0

               
               
               Conread position:896-1089
               
               
               Cow position:chr5:2695972-2695778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):158, 0

               
               
               Conread position:896-1089
               
               
               Cow position:chr5:4629600-4629792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):158, 75

               
               
               Conread position:896-1089
               
               
               Cow position:chr5:27907636-27907438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:147
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:898-1089
               
               
               Cow position:chr5:18491238-18491430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:156
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 0

               
               
               Conread position:899-1089
               
               
               Cow position:chr5:47872273-47872082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):155, 0

               
               
               Conread position:901-1089
               
               
               Cow position:chr5:39216402-39216213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):153, 0

               
               
               Conread position:901-1089
               
               
               Cow position:chr5:41488505-41488694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):153, 0

               
               
               Conread position:914-1089
               
               
               Cow position:chr5:18405203-18405030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):140, 111

               
               
               Conread position:914-1089
               
               
               Cow position:chr5:54952274-54952098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):140, 0

               
               
               Conread position:915-1089
               
               
               Cow position:chr5:41411589-41411414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):138, 0

               
               
               Conread position:916-1068
               
               
               Cow position:chr5:69770931-69771083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):46, 32

               
               
               Conread position:916-1075
               
               
               Cow position:chr5:52646702-52646542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):142, 0

               
               
               Conread position:916-1087
               
               
               Cow position:chr5:21827677-21827849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:142
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):138, 75

               
               
               Conread position:916-1089
               
               
               Cow position:chr5:64009844-64009670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:124
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):101, 105

               
               
               Conread position:917-1089
               
               
               Cow position:chr5:16053363-16053536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):133, 0

               
               
               Conread position:918-1125
               
               
               Cow position:chr5:12872275-12872483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):35, 204

               
               
               Conread position:920-1077
               
               
               Cow position:chr5:23642358-23642200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):135, 0

               
               
               Conread position:920-1089
               
               
               Cow position:chr5:51501743-51501908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):126, 13

               
               
               Conread position:921-1084
               
               
               Cow position:chr5:57124875-57125038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:922-1123
               
               
               Cow position:chr5:57928490-57928293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):132, 161

               
               
               Conread position:927-1089
               
               
               Cow position:chr5:29762785-29762949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):40, 10

               
               
               Conread position:928-1035
               
               
               Cow position:chr5:18043374-18043481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:89
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:928-1089
               
               
               Cow position:chr5:1382843-1383005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:928-1089
               
               
               Cow position:chr5:10772963-10772802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:126
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):126, 114

               
               
               Conread position:928-1089
               
               
               Cow position:chr5:36907200-36907038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:933-1089
               
               
               Cow position:chr5:36370125-36369968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:934-1089
               
               
               Cow position:chr5:6536670-6536515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):120, 84

               
               
               Conread position:941-1089
               
               
               Cow position:chr5:54867906-54868053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):113, 27

               
               
               Conread position:942-1089
               
               
               Cow position:chr5:44617021-44617169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:117
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:945-1089
               
               
               Cow position:chr5:42676140-42676285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:947-1081
               
               
               Cow position:chr5:30301739-30301872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:106
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:948-1106
               
               
               Cow position:chr5:47342756-47342914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):109, 144

               
               
               Conread position:956-1089
               
               
               Cow position:chr5:41548644-41548514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:104
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):102, 39

               
               
               Conread position:966-1089
               
               
               Cow position:chr5:51819631-51819755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:99
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:969-1086
               
               
               Cow position:chr5:19970129-19970011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:93
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:777-1088
               
               
               Cow position:chr6:3927997-3928304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 179

               
               
               Conread position:778-1093
               
               
               Cow position:chr6:52301592-52301907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:203
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):276, 112

               
               
               Conread position:780-1089
               
               
               Cow position:chr6:35883426-35883735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):140, 10

               
               
               Conread position:781-1089
               
               
               Cow position:chr6:17121242-17121549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):276, 150

               
               
               Conread position:782-962
               
               
               Cow position:chr6:52240946-52240767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:782-1081
               
               
               Cow position:chr6:6162985-6163285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:213
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):89, 127

               
               
               Conread position:782-1083
               
               
               Cow position:chr6:44950605-44950302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:206
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):231, 0

               
               
               Conread position:782-1084
               
               
               Cow position:chr6:7940934-7940630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:205
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):28, 21

               
               
               Conread position:782-1084
               
               
               Cow position:chr6:49165747-49165444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):275, 0

               
               
               Conread position:782-1089
               
               
               Cow position:chr6:24242146-24242452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):276, 146

               
               
               Conread position:782-1089
               
               
               Cow position:chr6:30270048-30269740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):275, 0

               
               
               Conread position:782-1089
               
               
               Cow position:chr6:47040354-47040046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):275, 0

               
               
               Conread position:782-1089
               
               
               Cow position:chr6:52190128-52189825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:216
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):74, 122

               
               
               Conread position:782-1089
               
               
               Cow position:chr6:60167695-60167395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:214
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):15, 21

               
               
               Conread position:782-1090
               
               
               Cow position:chr6:9840275-9839971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 258

               
               
               Conread position:783-905
               
               
               Cow position:chr6:34018269-34018391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:97
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-905
               
               
               Cow position:chr6:68871195-68871317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:97
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-908
               
               
               Cow position:chr6:23880496-23880373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):10, 18

               
               
               Conread position:783-920
               
               
               Cow position:chr6:31978425-31978561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:104
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:783-923
               
               
               Cow position:chr6:21711417-21711557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:109
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-929
               
               
               Cow position:chr6:35824697-35824844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:109
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:783-935
               
               
               Cow position:chr6:2377560-2377712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:117
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-950
               
               
               Cow position:chr6:14132887-14132720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-960
               
               
               Cow position:chr6:2641403-2641580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-960
               
               
               Cow position:chr6:35967610-35967433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-978
               
               
               Cow position:chr6:12971061-12970871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):127, 0

               
               
               Conread position:783-1001
               
               
               Cow position:chr6:66277296-66277515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:155
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):127, 116

               
               
               Conread position:783-1004
               
               
               Cow position:chr6:12514373-12514581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):128, 83

               
               
               Conread position:783-1006
               
               
               Cow position:chr6:66548330-66548548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:150
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:783-1010
               
               
               Cow position:chr6:13315457-13315230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:173
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):138, 124

               
               
               Conread position:783-1011
               
               
               Cow position:chr6:10680734-10680961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:167
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):87, 158

               
               
               Conread position:783-1013
               
               
               Cow position:chr6:51876680-51876908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:170
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):179, 0

               
               
               Conread position:783-1014
               
               
               Cow position:chr6:237019-236789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):161, 0

               
               
               Conread position:783-1016
               
               
               Cow position:chr6:1402672-1402440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:783-1016
               
               
               Cow position:chr6:1407260-1407028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:783-1016
               
               
               Cow position:chr6:14264699-14264925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):150, 0

               
               
               Conread position:783-1031
               
               
               Cow position:chr6:15031000-15030750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):60, 225

               
               
               Conread position:783-1033
               
               
               Cow position:chr6:41389590-41389350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 0

               
               
               Conread position:783-1035
               
               
               Cow position:chr6:8279904-8279658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):68, 30

               
               
               Conread position:783-1035
               
               
               Cow position:chr6:9586921-9587165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):213, 0

               
               
               Conread position:783-1042
               
               
               Cow position:chr6:8755961-8755702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):139, 149

               
               
               Conread position:783-1050
               
               
               Cow position:chr6:1262738-1263005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-1051
               
               
               Cow position:chr6:55902078-55902347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):133, 128

               
               
               Conread position:783-1054
               
               
               Cow position:chr6:44096688-44096953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:206
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):179, 70

               
               
               Conread position:783-1056
               
               
               Cow position:chr6:22679711-22679984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-1060
               
               
               Cow position:chr6:55238552-55238830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1063
               
               
               Cow position:chr6:7191694-7191431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:207
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):150, 47

               
               
               Conread position:783-1065
               
               
               Cow position:chr6:45591404-45591687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1075
               
               
               Cow position:chr6:12647093-12647378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:212
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):287, 88

               
               
               Conread position:783-1076
               
               
               Cow position:chr6:8536439-8536146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 222

               
               
               Conread position:783-1076
               
               
               Cow position:chr6:28103009-28102716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 13

               
               
               Conread position:783-1076
               
               
               Cow position:chr6:31009952-31009660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):228, 222

               
               
               Conread position:783-1077
               
               
               Cow position:chr6:7467794-7467499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1077
               
               
               Cow position:chr6:10044071-10044366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1077
               
               
               Cow position:chr6:27761558-27761853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1077
               
               
               Cow position:chr6:36230670-36230375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1077
               
               
               Cow position:chr6:45480220-45479937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 18

               
               
               Conread position:783-1077
               
               
               Cow position:chr6:52249643-52249357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 67

               
               
               Conread position:783-1077
               
               
               Cow position:chr6:58605387-58605681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):256, 147

               
               
               Conread position:783-1082
               
               
               Cow position:chr6:15276383-15276084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 136

               
               
               Conread position:783-1083
               
               
               Cow position:chr6:3573653-3573950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):269, 31

               
               
               Conread position:783-1083
               
               
               Cow position:chr6:16703873-16703586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:213
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):197, 83

               
               
               Conread position:783-1083
               
               
               Cow position:chr6:59618925-59619233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:783-1084
               
               
               Cow position:chr6:1096878-1096569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):248, 172

               
               
               Conread position:783-1084
               
               
               Cow position:chr6:2581269-2581559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):271, 74

               
               
               Conread position:783-1084
               
               
               Cow position:chr6:6182850-6182550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 15

               
               
               Conread position:783-1084
               
               
               Cow position:chr6:9234368-9234670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1084
               
               
               Cow position:chr6:10236054-10236354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:205
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):274, 74

               
               
               Conread position:783-1084
               
               
               Cow position:chr6:40277915-40278217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):270, 0

               
               
               Conread position:783-1084
               
               
               Cow position:chr6:58030636-58030935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 148

               
               
               Conread position:783-1089
               
               
               Cow position:chr6:127276-126969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr6:182684-182377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr6:328504-328200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):270, 185

               
               
               Conread position:783-1089
               
               
               Cow position:chr6:888413-888720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr6:916899-917206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr6:1380601-1380296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):250, 127

               
               
               Conread position:783-1089
               
               
               Cow position:chr6:1507654-1507347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr6:1536561-1536868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr6:1818943-1818637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 289

               
               
               Conread position:783-1089
               
               
               Cow position:chr6:2876175-2875868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr6:3119686-3119380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:215
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):178, 30

               
               
               Conread position:783-1089
               
               
               Cow position:chr6:3152074-3152381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 190

               
               
               Conread position:783-1089
               
               
               Cow position:chr6:3272624-3272318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 148

               
               
               Conread position:783-1089
               
               
               Cow position:chr6:3886650-3886342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):171, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr6:6159514-6159820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):273, 105

               
               
               Conread position:783-1089
               
               
               Cow position:chr6:6556817-6557124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr6:6720838-6721133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:210
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):19, 60

               
               
               Conread position:783-1089
               
               
               Cow position:chr6:7138484-7138177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr6:8205048-8205351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 102

               
               
               Conread position:783-1089
               
               
               Cow position:chr6:9734107-9733807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:218
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):271, 92

               
               
               Conread position:783-1089
               
               
               Cow position:chr6:9738401-9738091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 131

               
               
               Conread position:783-1089
               
               
               Cow position:chr6:10267236-10266928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 22

               
               
               Conread position:783-1089
               
               
               Cow position:chr6:11019513-11019820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 18

               
               
               Conread position:783-1089
               
               
               Cow position:chr6:11168362-11168670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 116

               
               
               Conread position:783-1089
               
               
               Cow position:chr6:11829782-11829469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr6:11870075-11869771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):265, 30

               
               
               Conread position:783-1089
               
               
               Cow position:chr6:12628758-12629065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):275, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr6:12663459-12663152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr6:13308529-13308233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 127

               
               
               Conread position:783-1089
               
               
               Cow position:chr6:14143889-14144185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:217
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr6:14851889-14851583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):267, 74

               
               
               Conread position:783-1089
               
               
               Cow position:chr6:14928315-14928622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):270, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr6:14950809-14950489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:226
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):59, 174

               
               
               Conread position:783-1089
               
               
               Cow position:chr6:15138310-15138010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 101

               
               
               Conread position:783-1089
               
               
               Cow position:chr6:15784117-15783817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):136, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr6:16418829-16418519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 71

               
               
               Conread position:783-1089
               
               
               Cow position:chr6:16592821-16593123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 102

               
               
               Conread position:783-1089
               
               
               Cow position:chr6:16766980-16766677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):270, 17

               
               
               Conread position:783-1089
               
               
               Cow position:chr6:17595429-17595122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr6:17927280-17927586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 25

               
               
               Conread position:783-1089
               
               
               Cow position:chr6:18520226-18519919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr6:19104052-19103745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):270, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr6:19713378-19713071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr6:20351233-20350926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr6:20553385-20553078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 128

               
               
               Conread position:783-1089
               
               
               Cow position:chr6:21832802-21832497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 35

               
               
               Conread position:783-1089
               
               
               Cow position:chr6:21975809-21976114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 46

               
               
               Conread position:783-1089
               
               
               Cow position:chr6:22737851-22737543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):194, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr6:25375238-25374945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 192

               
               
               Conread position:783-1089
               
               
               Cow position:chr6:26325343-26325036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr6:26668167-26667861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 146

               
               
               Conread position:783-1089
               
               
               Cow position:chr6:27151584-27151278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 40

               
               
               Conread position:783-1089
               
               
               Cow position:chr6:27172686-27172992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):210, 204

               
               
               Conread position:783-1089
               
               
               Cow position:chr6:27475268-27475574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 149

               
               
               Conread position:783-1089
               
               
               Cow position:chr6:28001520-28001228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 177

               
               
               Conread position:783-1089
               
               
               Cow position:chr6:28064847-28065154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr6:28160265-28160572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr6:28171760-28172074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):139, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr6:28185474-28185156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):221, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr6:28475915-28476234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:226
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):80, 312

               
               
               Conread position:783-1089
               
               
               Cow position:chr6:28488712-28488415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 127

               
               
               Conread position:783-1089
               
               
               Cow position:chr6:31913319-31913012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr6:33465816-33466121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):170, 155

               
               
               Conread position:783-1089
               
               
               Cow position:chr6:33490198-33489891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr6:33950296-33949997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 106

               
               
               Conread position:783-1089
               
               
               Cow position:chr6:34129314-34129620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 97

               
               
               Conread position:783-1089
               
               
               Cow position:chr6:34493531-34493838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr6:34504665-34504358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr6:34843857-34843550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr6:35873855-35873566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 29

               
               
               Conread position:783-1089
               
               
               Cow position:chr6:36531137-36531436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 127

               
               
               Conread position:783-1089
               
               
               Cow position:chr6:38873802-38873498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 51

               
               
               Conread position:783-1089
               
               
               Cow position:chr6:38932398-38932091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr6:39912181-39912487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 226

               
               
               Conread position:783-1089
               
               
               Cow position:chr6:39999601-39999294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr6:40158658-40158353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 18

               
               
               Conread position:783-1089
               
               
               Cow position:chr6:40550842-40550537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 74

               
               
               Conread position:783-1089
               
               
               Cow position:chr6:40864176-40863866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr6:41192179-41192489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr6:41231343-41231651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr6:41408261-41408568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 18

               
               
               Conread position:783-1089
               
               
               Cow position:chr6:43087736-43087433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):192, 209

               
               
               Conread position:783-1089
               
               
               Cow position:chr6:43620587-43620894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr6:43790722-43790413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):242, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr6:43798056-43797738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:226
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):173, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr6:44017971-44017665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 49

               
               
               Conread position:783-1089
               
               
               Cow position:chr6:44147091-44146784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr6:45937154-45937454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):263, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr6:46947675-46947981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 283

               
               
               Conread position:783-1089
               
               
               Cow position:chr6:48875475-48875177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 116

               
               
               Conread position:783-1089
               
               
               Cow position:chr6:49826396-49826089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr6:50485917-50485621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):247, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr6:50571044-50571354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr6:50637146-50637444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr6:51149798-51150105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr6:51867851-51868152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr6:52696494-52696794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 35

               
               
               Conread position:783-1089
               
               
               Cow position:chr6:52899807-52900109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr6:53543622-53543320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 46

               
               
               Conread position:783-1089
               
               
               Cow position:chr6:55474163-55474469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 124

               
               
               Conread position:783-1089
               
               
               Cow position:chr6:55539414-55539108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):136, 141

               
               
               Conread position:783-1089
               
               
               Cow position:chr6:56452239-56451932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr6:57181676-57181981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 236

               
               
               Conread position:783-1089
               
               
               Cow position:chr6:60332199-60332506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr6:60379019-60379326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr6:60876155-60876459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 270

               
               
               Conread position:783-1089
               
               
               Cow position:chr6:61829085-61829392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr6:62577326-62577019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr6:62664631-62664938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr6:64719174-64719481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 21

               
               
               Conread position:783-1089
               
               
               Cow position:chr6:68030035-68030342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1090
               
               
               Cow position:chr6:11722339-11722044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):137, 71

               
               
               Conread position:783-1090
               
               
               Cow position:chr6:14840690-14840998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:227
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):225, 57

               
               
               Conread position:783-1092
               
               
               Cow position:chr6:3893786-3893472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):272, 201

               
               
               Conread position:783-1098
               
               
               Cow position:chr6:6120123-6119814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 88

               
               
               Conread position:783-1107
               
               
               Cow position:chr6:41414486-41414164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:221
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):110, 86

               
               
               Conread position:783-1108
               
               
               Cow position:chr6:50121071-50120744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 243

               
               
               Conread position:783-1108
               
               
               Cow position:chr6:50720954-50721278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 309

               
               
               Conread position:783-1108
               
               
               Cow position:chr6:51732938-51733263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 18

               
               
               Conread position:783-1108
               
               
               Cow position:chr6:65819724-65819398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1108
               
               
               Cow position:chr6:66188944-66188618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1112
               
               
               Cow position:chr6:59596118-59596429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:224
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):271, 79

               
               
               Conread position:783-1118
               
               
               Cow position:chr6:25790843-25790507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 309

               
               
               Conread position:783-1118
               
               
               Cow position:chr6:40975042-40975378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1118
               
               
               Cow position:chr6:44509919-44510253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):273, 97

               
               
               Conread position:783-1124
               
               
               Cow position:chr6:25217813-25218151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 47

               
               
               Conread position:784-968
               
               
               Cow position:chr6:10634937-10635121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):77, 163

               
               
               Conread position:784-1035
               
               
               Cow position:chr6:43778379-43778627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:784-1066
               
               
               Cow position:chr6:39359329-39359059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:205
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):270, 85

               
               
               Conread position:784-1077
               
               
               Cow position:chr6:53935772-53935482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 17

               
               
               Conread position:784-1085
               
               
               Cow position:chr6:1498059-1498357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):270, 12

               
               
               Conread position:784-1085
               
               
               Cow position:chr6:11193733-11193428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 193

               
               
               Conread position:784-1088
               
               
               Cow position:chr6:65867644-65867946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):218, 73

               
               
               Conread position:784-1089
               
               
               Cow position:chr6:365748-366048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):270, 68

               
               
               Conread position:784-1089
               
               
               Cow position:chr6:11289599-11289303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:219
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):273, 154

               
               
               Conread position:784-1089
               
               
               Cow position:chr6:22044151-22043845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):270, 0

               
               
               Conread position:784-1089
               
               
               Cow position:chr6:30077425-30077121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:210
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):13, 17

               
               
               Conread position:784-1089
               
               
               Cow position:chr6:43330560-43330256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):269, 19

               
               
               Conread position:784-1089
               
               
               Cow position:chr6:47380535-47380829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):273, 70

               
               
               Conread position:785-970
               
               
               Cow position:chr6:38672092-38672271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:785-991
               
               
               Cow position:chr6:66838987-66839197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:785-1013
               
               
               Cow position:chr6:61179371-61179147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:161
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):194, 0

               
               
               Conread position:785-1051
               
               
               Cow position:chr6:1275131-1274866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 0

               
               
               Conread position:785-1056
               
               
               Cow position:chr6:3685810-3686079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:197
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:785-1083
               
               
               Cow position:chr6:5946917-5946618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):134, 15

               
               
               Conread position:785-1083
               
               
               Cow position:chr6:65875423-65875124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 15

               
               
               Conread position:785-1084
               
               
               Cow position:chr6:12351686-12351990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:785-1084
               
               
               Cow position:chr6:39331672-39331373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):272, 15

               
               
               Conread position:785-1089
               
               
               Cow position:chr6:2367383-2367098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):117, 81

               
               
               Conread position:785-1089
               
               
               Cow position:chr6:11354305-11354015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:222
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):269, 80

               
               
               Conread position:785-1089
               
               
               Cow position:chr6:15924731-15924432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 83

               
               
               Conread position:785-1089
               
               
               Cow position:chr6:26772263-26771958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):269, 0

               
               
               Conread position:785-1089
               
               
               Cow position:chr6:45724287-45723982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):269, 0

               
               
               Conread position:785-1089
               
               
               Cow position:chr6:55592914-55593233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):233, 66

               
               
               Conread position:785-1089
               
               
               Cow position:chr6:63405669-63405973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:216
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):148, 78

               
               
               Conread position:785-1098
               
               
               Cow position:chr6:43186963-43187277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:221
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):300, 252

               
               
               Conread position:785-1113
               
               
               Cow position:chr6:10571036-10570708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:226
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):217, 57

               
               
               Conread position:786-1083
               
               
               Cow position:chr6:4047420-4047123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:193
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):20, 27

               
               
               Conread position:786-1084
               
               
               Cow position:chr6:42266598-42266896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 12

               
               
               Conread position:786-1088
               
               
               Cow position:chr6:37386009-37386310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):48, 161

               
               
               Conread position:786-1089
               
               
               Cow position:chr6:48714-48409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:786-1089
               
               
               Cow position:chr6:2543588-2543898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):194, 0

               
               
               Conread position:786-1089
               
               
               Cow position:chr6:14147062-14147362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):205, 145

               
               
               Conread position:786-1089
               
               
               Cow position:chr6:65930104-65930421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):139, 0

               
               
               Conread position:787-1065
               
               
               Cow position:chr6:4904124-4903846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 123

               
               
               Conread position:790-1076
               
               
               Cow position:chr6:28550198-28549914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:202
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:790-1089
               
               
               Cow position:chr6:18667484-18667196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:195
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):167, 20

               
               
               Conread position:790-1089
               
               
               Cow position:chr6:42615962-42616260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):258, 36

               
               
               Conread position:791-1089
               
               
               Cow position:chr6:30317079-30316778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):266, 106

               
               
               Conread position:792-1089
               
               
               Cow position:chr6:57521039-57521338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):135, 0

               
               
               Conread position:793-1089
               
               
               Cow position:chr6:53462289-53461991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):160, 89

               
               
               Conread position:795-1113
               
               
               Cow position:chr6:62487601-62487292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):154, 21

               
               
               Conread position:796-1016
               
               
               Cow position:chr6:4467480-4467700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:168
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:796-1077
               
               
               Cow position:chr6:1888568-1888287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 114

               
               
               Conread position:796-1078
               
               
               Cow position:chr6:46218559-46218841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):258, 99

               
               
               Conread position:796-1089
               
               
               Cow position:chr6:35417084-35416809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:212
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:796-1106
               
               
               Cow position:chr6:34074732-34075048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 42

               
               
               Conread position:797-1089
               
               
               Cow position:chr6:7759372-7759089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:191
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):223, 17

               
               
               Conread position:797-1089
               
               
               Cow position:chr6:41676805-41677097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):257, 43

               
               
               Conread position:797-1094
               
               
               Cow position:chr6:10650913-10650626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:800-1084
               
               
               Cow position:chr6:53418354-53418635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):180, 10

               
               
               Conread position:800-1090
               
               
               Cow position:chr6:27341474-27341765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:194
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):258, 0

               
               
               Conread position:800-1108
               
               
               Cow position:chr6:14305499-14305806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):250, 67

               
               
               Conread position:802-954
               
               
               Cow position:chr6:67267142-67267296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):137, 55

               
               
               Conread position:802-1026
               
               
               Cow position:chr6:6474566-6474348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:170
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:802-1076
               
               
               Cow position:chr6:41050873-41051145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):231, 35

               
               
               Conread position:802-1077
               
               
               Cow position:chr6:24584501-24584228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:198
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):60, 126

               
               
               Conread position:802-1083
               
               
               Cow position:chr6:43049320-43049037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):252, 0

               
               
               Conread position:802-1083
               
               
               Cow position:chr6:51717431-51717712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):255, 69

               
               
               Conread position:802-1089
               
               
               Cow position:chr6:7816445-7816731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):8, 13

               
               
               Conread position:802-1089
               
               
               Cow position:chr6:14498071-14497792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:192
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):124, 44

               
               
               Conread position:802-1089
               
               
               Cow position:chr6:15153986-15154272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:211
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):8, 13

               
               
               Conread position:802-1089
               
               
               Cow position:chr6:24632372-24632088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:208
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):44, 66

               
               
               Conread position:802-1089
               
               
               Cow position:chr6:32419828-32420113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 42

               
               
               Conread position:802-1089
               
               
               Cow position:chr6:39897825-39898113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):252, 0

               
               
               Conread position:803-1089
               
               
               Cow position:chr6:16050414-16050129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):251, 159

               
               
               Conread position:803-1118
               
               
               Cow position:chr6:55945550-55945233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):6, 108

               
               
               Conread position:804-1089
               
               
               Cow position:chr6:18571701-18571421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:192
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):251, 196

               
               
               Conread position:804-1089
               
               
               Cow position:chr6:52245389-52245672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:194
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):14, 59

               
               
               Conread position:805-1089
               
               
               Cow position:chr6:478428-478713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):252, 0

               
               
               Conread position:805-1089
               
               
               Cow position:chr6:17049249-17049536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 52

               
               
               Conread position:805-1089
               
               
               Cow position:chr6:39847794-39848081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:193
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):147, 35

               
               
               Conread position:805-1089
               
               
               Cow position:chr6:58952243-58951961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:203
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):251, 200

               
               
               Conread position:805-1090
               
               
               Cow position:chr6:11639344-11639035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:806-1047
               
               
               Cow position:chr6:14065326-14065564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:806-1076
               
               
               Cow position:chr6:33508144-33508408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 34

               
               
               Conread position:806-1089
               
               
               Cow position:chr6:6165522-6165808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):106, 51

               
               
               Conread position:808-1085
               
               
               Cow position:chr6:68912520-68912243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):225, 72

               
               
               Conread position:808-1089
               
               
               Cow position:chr6:10611709-10611990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):246, 49

               
               
               Conread position:809-997
               
               
               Cow position:chr6:62852465-62852653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:813-1089
               
               
               Cow position:chr6:37387464-37387741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):241, 0

               
               
               Conread position:814-974
               
               
               Cow position:chr6:52807206-52807364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:814-1004
               
               
               Cow position:chr6:65944266-65944076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:817-1083
               
               
               Cow position:chr6:65049769-65049508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):237, 132

               
               
               Conread position:817-1089
               
               
               Cow position:chr6:529996-529726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):231, 57

               
               
               Conread position:817-1089
               
               
               Cow position:chr6:2452738-2453009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):237, 121

               
               
               Conread position:817-1089
               
               
               Cow position:chr6:58880105-58880373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:176
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):238, 87

               
               
               Conread position:817-1089
               
               
               Cow position:chr6:67553123-67553395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):237, 121

               
               
               Conread position:818-1089
               
               
               Cow position:chr6:618307-618577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:189
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):242, 183

               
               
               Conread position:818-1089
               
               
               Cow position:chr6:16699097-16699369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):236, 0

               
               
               Conread position:818-1089
               
               
               Cow position:chr6:47024931-47025200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:187
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):218, 11

               
               
               Conread position:820-1014
               
               
               Cow position:chr6:66511401-66511597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):173, 63

               
               
               Conread position:821-1076
               
               
               Cow position:chr6:54734227-54734486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):128, 21

               
               
               Conread position:821-1090
               
               
               Cow position:chr6:61065494-61065756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):216, 21

               
               
               Conread position:824-1089
               
               
               Cow position:chr6:20450857-20451123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):233, 0

               
               
               Conread position:825-1089
               
               
               Cow position:chr6:47849002-47848745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):96, 29

               
               
               Conread position:826-1089
               
               
               Cow position:chr6:705905-706161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):231, 81

               
               
               Conread position:826-1089
               
               
               Cow position:chr6:31940766-31941030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):228, 0

               
               
               Conread position:826-1113
               
               
               Cow position:chr6:65848463-65848183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:203
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):227, 59

               
               
               Conread position:827-1089
               
               
               Cow position:chr6:5112201-5111932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):189, 0

               
               
               Conread position:827-1106
               
               
               Cow position:chr6:4388640-4388920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):184, 175

               
               
               Conread position:828-1089
               
               
               Cow position:chr6:8634399-8634142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 52

               
               
               Conread position:828-1089
               
               
               Cow position:chr6:48327114-48327372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):143, 26

               
               
               Conread position:830-1075
               
               
               Cow position:chr6:56377991-56377742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):187, 49

               
               
               Conread position:833-1089
               
               
               Cow position:chr6:17112253-17112002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):221, 12

               
               
               Conread position:833-1089
               
               
               Cow position:chr6:17386435-17386686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):221, 12

               
               
               Conread position:835-1035
               
               
               Cow position:chr6:40730105-40730304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):183, 0

               
               
               Conread position:835-1084
               
               
               Cow position:chr6:4680503-4680751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:172
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):171, 54

               
               
               Conread position:837-1089
               
               
               Cow position:chr6:67173465-67173718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):217, 0

               
               
               Conread position:839-1077
               
               
               Cow position:chr6:18970515-18970284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):215, 27

               
               
               Conread position:840-997
               
               
               Cow position:chr6:46372910-46372755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:840-1089
               
               
               Cow position:chr6:18150370-18150126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):81, 54

               
               
               Conread position:844-1077
               
               
               Cow position:chr6:6595340-6595574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:163
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):210, 0

               
               
               Conread position:844-1089
               
               
               Cow position:chr6:1105232-1104988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:181
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:844-1108
               
               
               Cow position:chr6:33983740-33983998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:192
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):65, 98

               
               
               Conread position:845-1118
               
               
               Cow position:chr6:29283188-29283465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:189
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):15, 69

               
               
               Conread position:846-1084
               
               
               Cow position:chr6:27527040-27526805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):211, 64

               
               
               Conread position:846-1089
               
               
               Cow position:chr6:58072579-58072819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:182
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):208, 116

               
               
               Conread position:850-1089
               
               
               Cow position:chr6:41556258-41556494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):145, 108

               
               
               Conread position:852-1089
               
               
               Cow position:chr6:12997347-12997584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):202, 33

               
               
               Conread position:854-1060
               
               
               Cow position:chr6:2089210-2089416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:159
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):201, 130

               
               
               Conread position:854-1084
               
               
               Cow position:chr6:16624708-16624934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:163
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):202, 27

               
               
               Conread position:854-1089
               
               
               Cow position:chr6:25357932-25357698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:175
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):200, 17

               
               
               Conread position:854-1099
               
               
               Cow position:chr6:34030213-34030454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):7, 118

               
               
               Conread position:854-1118
               
               
               Cow position:chr6:40759957-40760214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):174, 0

               
               
               Conread position:857-1089
               
               
               Cow position:chr6:33809504-33809271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:176
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):197, 0

               
               
               Conread position:857-1089
               
               
               Cow position:chr6:49625763-49625994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:162
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):148, 0

               
               
               Conread position:857-1089
               
               
               Cow position:chr6:50113621-50113847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):197, 6

               
               
               Conread position:858-1076
               
               
               Cow position:chr6:47171013-47171231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:165
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):196, 167

               
               
               Conread position:858-1084
               
               
               Cow position:chr6:45279868-45280094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:167
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):179, 196

               
               
               Conread position:858-1140
               
               
               Cow position:chr6:55042190-55041908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:204
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):196, 13

               
               
               Conread position:859-1076
               
               
               Cow position:chr6:58016291-58016506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):195, 15

               
               
               Conread position:860-1089
               
               
               Cow position:chr6:47573735-47573961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:186
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 33

               
               
               Conread position:861-1089
               
               
               Cow position:chr6:52978221-52977995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):101, 46

               
               
               Conread position:861-1118
               
               
               Cow position:chr6:47150035-47149777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:185
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):196, 157

               
               
               Conread position:862-1031
               
               
               Cow position:chr6:10680628-10680460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):166, 0

               
               
               Conread position:874-1013
               
               
               Cow position:chr6:18497247-18497386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:874-1089
               
               
               Cow position:chr6:11453921-11453705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:171
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):182, 0

               
               
               Conread position:874-1089
               
               
               Cow position:chr6:27534857-27534640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:874-1089
               
               
               Cow position:chr6:38438553-38438769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 0

               
               
               Conread position:874-1108
               
               
               Cow position:chr6:35600626-35600861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:176
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):175, 225

               
               
               Conread position:874-1108
               
               
               Cow position:chr6:67211641-67211405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:175
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:874-1118
               
               
               Cow position:chr6:727673-727434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):177, 112

               
               
               Conread position:878-1081
               
               
               Cow position:chr6:29085424-29085220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):176, 0

               
               
               Conread position:879-1083
               
               
               Cow position:chr6:25783479-25783276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):57, 93

               
               
               Conread position:880-1042
               
               
               Cow position:chr6:32019184-32019023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:129
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):7, 143

               
               
               Conread position:880-1084
               
               
               Cow position:chr6:16595939-16596139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):41, 5

               
               
               Conread position:880-1089
               
               
               Cow position:chr6:2087474-2087685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:882-1056
               
               
               Cow position:chr6:42135944-42136118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:883-1084
               
               
               Cow position:chr6:7105573-7105370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:883-1089
               
               
               Cow position:chr6:57302568-57302772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):171, 94

               
               
               Conread position:885-1089
               
               
               Cow position:chr6:1796585-1796790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:155
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):169, 0

               
               
               Conread position:886-1118
               
               
               Cow position:chr6:2186823-2186590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):171, 206

               
               
               Conread position:887-1089
               
               
               Cow position:chr6:65892909-65892708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:145
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):178, 0

               
               
               Conread position:891-1089
               
               
               Cow position:chr6:7112969-7112772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:158
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):112, 76

               
               
               Conread position:892-1089
               
               
               Cow position:chr6:67448961-67448763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):162, 0

               
               
               Conread position:896-1089
               
               
               Cow position:chr6:5130484-5130290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:133
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):83, 177

               
               
               Conread position:896-1089
               
               
               Cow position:chr6:14897153-14897343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:154
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):158, 73

               
               
               Conread position:902-1089
               
               
               Cow position:chr6:63177018-63177206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):152, 0

               
               
               Conread position:914-1076
               
               
               Cow position:chr6:2618576-2618416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):140, 54

               
               
               Conread position:914-1077
               
               
               Cow position:chr6:13850725-13850889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:128
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):140, 0

               
               
               Conread position:914-1089
               
               
               Cow position:chr6:843841-843665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):140, 0

               
               
               Conread position:914-1089
               
               
               Cow position:chr6:17556685-17556507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):134, 0

               
               
               Conread position:916-1123
               
               
               Cow position:chr6:7921048-7920839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):138, 202

               
               
               Conread position:920-1089
               
               
               Cow position:chr6:21711697-21711869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:920-1089
               
               
               Cow position:chr6:64425785-64425955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):134, 0

               
               
               Conread position:922-1089
               
               
               Cow position:chr6:13405224-13405391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):132, 9

               
               
               Conread position:925-1084
               
               
               Cow position:chr6:59710728-59710888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):129, 0

               
               
               Conread position:925-1089
               
               
               Cow position:chr6:3485420-3485256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):132, 20

               
               
               Conread position:926-1096
               
               
               Cow position:chr6:28481336-28481501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:926-1115
               
               
               Cow position:chr6:12926572-12926762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):128, 0

               
               
               Conread position:926-1123
               
               
               Cow position:chr6:13491002-13490803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):128, 0

               
               
               Conread position:928-1077
               
               
               Cow position:chr6:23880055-23879905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:121
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):125, 0

               
               
               Conread position:928-1089
               
               
               Cow position:chr6:452262-452100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:928-1089
               
               
               Cow position:chr6:6034796-6034634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:928-1089
               
               
               Cow position:chr6:23568592-23568430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:928-1089
               
               
               Cow position:chr6:43039066-43038904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):102, 56

               
               
               Conread position:930-1088
               
               
               Cow position:chr6:21857362-21857203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:937-1089
               
               
               Cow position:chr6:34017999-34017846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:942-1089
               
               
               Cow position:chr6:6459129-6459277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:942-1089
               
               
               Cow position:chr6:57856784-57856933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:946-1087
               
               
               Cow position:chr6:32286572-32286715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:951-1089
               
               
               Cow position:chr6:46633143-46633282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:105
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:963-1089
               
               
               Cow position:chr6:46764366-46764239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:97
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:776-1089
               
               
               Cow position:chr7:14865214-14865526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:219
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):86, 110

               
               
               Conread position:779-1108
               
               
               Cow position:chr7:13238661-13238333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):275, 159

               
               
               Conread position:780-1084
               
               
               Cow position:chr7:67497170-67497467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:220
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):115, 7

               
               
               Conread position:782-959
               
               
               Cow position:chr7:54513924-54514098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):134, 125

               
               
               Conread position:782-999
               
               
               Cow position:chr7:35867476-35867261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:782-1034
               
               
               Cow position:chr7:51193655-51193900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):139, 128

               
               
               Conread position:782-1070
               
               
               Cow position:chr7:36127485-36127767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):191, 74

               
               
               Conread position:782-1076
               
               
               Cow position:chr7:37023286-37023576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:201
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):222, 0

               
               
               Conread position:782-1076
               
               
               Cow position:chr7:40263402-40263110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 65

               
               
               Conread position:782-1076
               
               
               Cow position:chr7:62360241-62360544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:208
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:782-1077
               
               
               Cow position:chr7:30042930-30043225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):191, 237

               
               
               Conread position:782-1077
               
               
               Cow position:chr7:50021750-50021457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):272, 42

               
               
               Conread position:782-1082
               
               
               Cow position:chr7:69018209-69018502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):267, 172

               
               
               Conread position:782-1089
               
               
               Cow position:chr7:29473391-29473698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):273, 246

               
               
               Conread position:782-1089
               
               
               Cow position:chr7:50536340-50536032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):272, 0

               
               
               Conread position:782-1089
               
               
               Cow position:chr7:67802276-67802583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):275, 264

               
               
               Conread position:782-1090
               
               
               Cow position:chr7:48625698-48626008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 296

               
               
               Conread position:782-1108
               
               
               Cow position:chr7:42430585-42430910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):272, 19

               
               
               Conread position:782-1108
               
               
               Cow position:chr7:48637665-48637986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):242, 180

               
               
               Conread position:782-1108
               
               
               Cow position:chr7:66274166-66273837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:223
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):34, 57

               
               
               Conread position:783-894
               
               
               Cow position:chr7:44456292-44456181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:92
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-908
               
               
               Cow position:chr7:8142025-8141900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:98
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-908
               
               
               Cow position:chr7:26888865-26888740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:98
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-908
               
               
               Cow position:chr7:38188276-38188401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-926
               
               
               Cow position:chr7:61138213-61138070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:106
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-949
               
               
               Cow position:chr7:19762986-19763151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):133, 127

               
               
               Conread position:783-949
               
               
               Cow position:chr7:28642596-28642757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:783-976
               
               
               Cow position:chr7:64358134-64358334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):10, 18

               
               
               Conread position:783-979
               
               
               Cow position:chr7:67492284-67492477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):150, 64

               
               
               Conread position:783-993
               
               
               Cow position:chr7:52762701-52762491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:168
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 18

               
               
               Conread position:783-998
               
               
               Cow position:chr7:50881014-50881227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:143
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:783-1001
               
               
               Cow position:chr7:19181961-19182176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:168
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):201, 0

               
               
               Conread position:783-1004
               
               
               Cow position:chr7:33809477-33809697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:167
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):201, 0

               
               
               Conread position:783-1007
               
               
               Cow position:chr7:16629887-16630105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:149
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:783-1016
               
               
               Cow position:chr7:536887-536659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):141, 0

               
               
               Conread position:783-1016
               
               
               Cow position:chr7:22760562-22760792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):225, 55

               
               
               Conread position:783-1026
               
               
               Cow position:chr7:51674679-51674932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):88, 79

               
               
               Conread position:783-1032
               
               
               Cow position:chr7:68086890-68087140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:177
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):160, 193

               
               
               Conread position:783-1033
               
               
               Cow position:chr7:6434039-6433788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:187
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:783-1034
               
               
               Cow position:chr7:24720671-24720424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):180, 0

               
               
               Conread position:783-1034
               
               
               Cow position:chr7:24779870-24779628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:783-1035
               
               
               Cow position:chr7:7277357-7277609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-1035
               
               
               Cow position:chr7:24422301-24422549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:187
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:783-1048
               
               
               Cow position:chr7:42333197-42333455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:783-1051
               
               
               Cow position:chr7:66299205-66298935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):255, 0

               
               
               Conread position:783-1057
               
               
               Cow position:chr7:62990678-62990951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 18

               
               
               Conread position:783-1060
               
               
               Cow position:chr7:62393433-62393705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:199
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:783-1066
               
               
               Cow position:chr7:36471919-36472205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:207
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):86, 73

               
               
               Conread position:783-1067
               
               
               Cow position:chr7:23463455-23463173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):262, 146

               
               
               Conread position:783-1067
               
               
               Cow position:chr7:39095548-39095267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:783-1067
               
               
               Cow position:chr7:52801654-52801375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:187
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):254, 147

               
               
               Conread position:783-1068
               
               
               Cow position:chr7:20796510-20796226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 18

               
               
               Conread position:783-1069
               
               
               Cow position:chr7:25082208-25082490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):213, 45

               
               
               Conread position:783-1069
               
               
               Cow position:chr7:63948162-63947878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):196, 86

               
               
               Conread position:783-1076
               
               
               Cow position:chr7:65326792-65326505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:209
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):57, 75

               
               
               Conread position:783-1077
               
               
               Cow position:chr7:20434785-20435079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 248

               
               
               Conread position:783-1077
               
               
               Cow position:chr7:26837356-26837662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:221
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):133, 121

               
               
               Conread position:783-1077
               
               
               Cow position:chr7:42224846-42224551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 178

               
               
               Conread position:783-1077
               
               
               Cow position:chr7:58336078-58335786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):272, 112

               
               
               Conread position:783-1081
               
               
               Cow position:chr7:65957610-65957313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):78, 239

               
               
               Conread position:783-1083
               
               
               Cow position:chr7:443312-443011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1083
               
               
               Cow position:chr7:998140-998443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):233, 0

               
               
               Conread position:783-1083
               
               
               Cow position:chr7:5660806-5661105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:211
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):273, 88

               
               
               Conread position:783-1083
               
               
               Cow position:chr7:20828973-20829272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:211
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):133, 51

               
               
               Conread position:783-1083
               
               
               Cow position:chr7:27457764-27457463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1083
               
               
               Cow position:chr7:42873092-42873393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1083
               
               
               Cow position:chr7:44524275-44523980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:204
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):57, 73

               
               
               Conread position:783-1083
               
               
               Cow position:chr7:45953627-45953928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):272, 0

               
               
               Conread position:783-1083
               
               
               Cow position:chr7:59774260-59774560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 213

               
               
               Conread position:783-1084
               
               
               Cow position:chr7:266111-266406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):263, 86

               
               
               Conread position:783-1084
               
               
               Cow position:chr7:3128252-3128554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1084
               
               
               Cow position:chr7:6800146-6799855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 68

               
               
               Conread position:783-1084
               
               
               Cow position:chr7:19272608-19272316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):250, 8

               
               
               Conread position:783-1084
               
               
               Cow position:chr7:21314838-21315125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):272, 51

               
               
               Conread position:783-1084
               
               
               Cow position:chr7:23129757-23130051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:219
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):263, 124

               
               
               Conread position:783-1084
               
               
               Cow position:chr7:24805545-24805243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1084
               
               
               Cow position:chr7:25442723-25443022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 35

               
               
               Conread position:783-1084
               
               
               Cow position:chr7:29303829-29303528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 139

               
               
               Conread position:783-1084
               
               
               Cow position:chr7:50961029-50961326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:783-1084
               
               
               Cow position:chr7:61832544-61832244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 161

               
               
               Conread position:783-1085
               
               
               Cow position:chr7:53404344-53404652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):135, 124

               
               
               Conread position:783-1088
               
               
               Cow position:chr7:24059455-24059756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:215
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):275, 42

               
               
               Conread position:783-1089
               
               
               Cow position:chr7:844869-845176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr7:900303-899999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):264, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr7:971772-971477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 28

               
               
               Conread position:783-1089
               
               
               Cow position:chr7:982645-982340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):270, 43

               
               
               Conread position:783-1089
               
               
               Cow position:chr7:1331466-1331159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr7:1367747-1367440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr7:1382707-1383012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):275, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr7:1441888-1441581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr7:3297731-3297425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 271

               
               
               Conread position:783-1089
               
               
               Cow position:chr7:4127913-4128218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:214
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):179, 51

               
               
               Conread position:783-1089
               
               
               Cow position:chr7:5251200-5250911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:221
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):271, 162

               
               
               Conread position:783-1089
               
               
               Cow position:chr7:5305038-5304731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr7:6626426-6626119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr7:6628820-6628513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr7:6666448-6666755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr7:6722982-6723288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 293

               
               
               Conread position:783-1089
               
               
               Cow position:chr7:10428472-10428165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr7:11420633-11420325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):248, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr7:14212472-14212175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 128

               
               
               Conread position:783-1089
               
               
               Cow position:chr7:16934251-16934558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr7:18864890-18864583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):270, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr7:19097348-19097041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):270, 67

               
               
               Conread position:783-1089
               
               
               Cow position:chr7:21124722-21124415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr7:21240809-21240507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):263, 179

               
               
               Conread position:783-1089
               
               
               Cow position:chr7:21317105-21317412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr7:21323210-21323516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 254

               
               
               Conread position:783-1089
               
               
               Cow position:chr7:21424417-21424113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 40

               
               
               Conread position:783-1089
               
               
               Cow position:chr7:22597963-22598270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr7:23140499-23140807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr7:26927228-26926922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 194

               
               
               Conread position:783-1089
               
               
               Cow position:chr7:27099322-27099016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 114

               
               
               Conread position:783-1089
               
               
               Cow position:chr7:27572195-27572500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 110

               
               
               Conread position:783-1089
               
               
               Cow position:chr7:27722937-27722634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):270, 29

               
               
               Conread position:783-1089
               
               
               Cow position:chr7:29381857-29382164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr7:30651677-30651980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:208
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):126, 35

               
               
               Conread position:783-1089
               
               
               Cow position:chr7:31260010-31259703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr7:33063873-33063576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:203
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):25, 72

               
               
               Conread position:783-1089
               
               
               Cow position:chr7:33309302-33308989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr7:34819006-34819313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr7:35920364-35920057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr7:36343833-36343528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 42

               
               
               Conread position:783-1089
               
               
               Cow position:chr7:37165810-37166116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr7:37507806-37507499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr7:38399799-38400105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):138, 114

               
               
               Conread position:783-1089
               
               
               Cow position:chr7:39794812-39795121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):136, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr7:40317647-40317954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):133, 127

               
               
               Conread position:783-1089
               
               
               Cow position:chr7:42302480-42302177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:223
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):135, 58

               
               
               Conread position:783-1089
               
               
               Cow position:chr7:43395073-43394763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):223, 54

               
               
               Conread position:783-1089
               
               
               Cow position:chr7:45170483-45170790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr7:45613526-45613221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 15

               
               
               Conread position:783-1089
               
               
               Cow position:chr7:45766375-45766071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 127

               
               
               Conread position:783-1089
               
               
               Cow position:chr7:45929223-45928916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 91

               
               
               Conread position:783-1089
               
               
               Cow position:chr7:45945907-45945600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr7:46194860-46195167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr7:46235765-46236077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:207
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):75, 152

               
               
               Conread position:783-1089
               
               
               Cow position:chr7:46266112-46266422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr7:49403612-49403300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:219
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):60, 31

               
               
               Conread position:783-1089
               
               
               Cow position:chr7:49603622-49603316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 114

               
               
               Conread position:783-1089
               
               
               Cow position:chr7:49826143-49825836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr7:50053101-50052802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):134, 70

               
               
               Conread position:783-1089
               
               
               Cow position:chr7:53070078-53070382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 164

               
               
               Conread position:783-1089
               
               
               Cow position:chr7:54510261-54509957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):84, 102

               
               
               Conread position:783-1089
               
               
               Cow position:chr7:54823474-54823167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr7:55041461-55041767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 259

               
               
               Conread position:783-1089
               
               
               Cow position:chr7:55534972-55534665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr7:57516603-57516905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr7:58197225-58196911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):195, 180

               
               
               Conread position:783-1089
               
               
               Cow position:chr7:59141166-59141469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:222
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):88, 131

               
               
               Conread position:783-1089
               
               
               Cow position:chr7:59559437-59559127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:210
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):71, 157

               
               
               Conread position:783-1089
               
               
               Cow position:chr7:60465661-60465974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr7:60727508-60727199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 150

               
               
               Conread position:783-1089
               
               
               Cow position:chr7:61577179-61576872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):137, 147

               
               
               Conread position:783-1089
               
               
               Cow position:chr7:61825100-61824799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):199, 27

               
               
               Conread position:783-1089
               
               
               Cow position:chr7:62702698-62702391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr7:63134799-63135100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:217
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):167, 74

               
               
               Conread position:783-1089
               
               
               Cow position:chr7:63379919-63379621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 88

               
               
               Conread position:783-1089
               
               
               Cow position:chr7:64012373-64012680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr7:64354963-64355269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr7:65557470-65557163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr7:65813786-65814093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr7:65870557-65870242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr7:66908192-66908498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 18

               
               
               Conread position:783-1089
               
               
               Cow position:chr7:67837912-67838219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:213
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1090
               
               
               Cow position:chr7:57539102-57538799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):101, 45

               
               
               Conread position:783-1091
               
               
               Cow position:chr7:3158241-3158549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 94

               
               
               Conread position:783-1094
               
               
               Cow position:chr7:58921106-58921412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):133, 13

               
               
               Conread position:783-1095
               
               
               Cow position:chr7:113564-113876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 309

               
               
               Conread position:783-1096
               
               
               Cow position:chr7:39499352-39499025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:233
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):30, 285

               
               
               Conread position:783-1100
               
               
               Cow position:chr7:61623747-61623435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):38, 224

               
               
               Conread position:783-1106
               
               
               Cow position:chr7:7261470-7261789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):269, 102

               
               
               Conread position:783-1108
               
               
               Cow position:chr7:3634799-3634472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1108
               
               
               Cow position:chr7:24955183-24955502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 80

               
               
               Conread position:783-1108
               
               
               Cow position:chr7:26456296-26455969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 18

               
               
               Conread position:783-1108
               
               
               Cow position:chr7:27141933-27142268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):158, 0

               
               
               Conread position:783-1108
               
               
               Cow position:chr7:38145917-38145600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 51

               
               
               Conread position:783-1108
               
               
               Cow position:chr7:42428548-42428865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 109

               
               
               Conread position:783-1108
               
               
               Cow position:chr7:49784771-49784443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 106

               
               
               Conread position:783-1108
               
               
               Cow position:chr7:63021827-63022151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):173, 202

               
               
               Conread position:783-1108
               
               
               Cow position:chr7:63955095-63954779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:227
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:783-1109
               
               
               Cow position:chr7:57161784-57161456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 106

               
               
               Conread position:783-1112
               
               
               Cow position:chr7:66572077-66571747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:225
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):57, 156

               
               
               Conread position:783-1113
               
               
               Cow position:chr7:62952295-62952610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:234
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):27, 75

               
               
               Conread position:783-1115
               
               
               Cow position:chr7:30173281-30172959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:236
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):271, 47

               
               
               Conread position:783-1118
               
               
               Cow position:chr7:53363248-53362909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):150, 0

               
               
               Conread position:783-1123
               
               
               Cow position:chr7:34151889-34152229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 293

               
               
               Conread position:783-1124
               
               
               Cow position:chr7:49845329-49844989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):150, 104

               
               
               Conread position:784-905
               
               
               Cow position:chr7:30116294-30116170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:97
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:784-949
               
               
               Cow position:chr7:62792092-62792257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:784-1010
               
               
               Cow position:chr7:68235610-68235835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:784-1031
               
               
               Cow position:chr7:5437157-5436912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:179
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):154, 0

               
               
               Conread position:784-1067
               
               
               Cow position:chr7:58302978-58303250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:205
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):270, 23

               
               
               Conread position:784-1075
               
               
               Cow position:chr7:59686950-59687235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:207
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):270, 140

               
               
               Conread position:784-1077
               
               
               Cow position:chr7:99614-99333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):116, 70

               
               
               Conread position:784-1084
               
               
               Cow position:chr7:55964353-55964652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:208
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):240, 105

               
               
               Conread position:784-1087
               
               
               Cow position:chr7:56888058-56887758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):270, 130

               
               
               Conread position:784-1089
               
               
               Cow position:chr7:19044270-19043966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):172, 180

               
               
               Conread position:784-1089
               
               
               Cow position:chr7:19926914-19926608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):270, 0

               
               
               Conread position:784-1089
               
               
               Cow position:chr7:30305770-30306071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):270, 12

               
               
               Conread position:784-1089
               
               
               Cow position:chr7:39324524-39324823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):270, 50

               
               
               Conread position:784-1089
               
               
               Cow position:chr7:41873347-41873065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):198, 61

               
               
               Conread position:784-1089
               
               
               Cow position:chr7:42594613-42594322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:784-1089
               
               
               Cow position:chr7:44591118-44590816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):146, 87

               
               
               Conread position:784-1089
               
               
               Cow position:chr7:47045222-47045508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):270, 29

               
               
               Conread position:784-1089
               
               
               Cow position:chr7:47190792-47190488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 144

               
               
               Conread position:784-1089
               
               
               Cow position:chr7:52384262-52383957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):216, 165

               
               
               Conread position:784-1108
               
               
               Cow position:chr7:55689028-55688704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):270, 113

               
               
               Conread position:784-1113
               
               
               Cow position:chr7:35276507-35276191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):175, 85

               
               
               Conread position:784-1118
               
               
               Cow position:chr7:54582406-54582739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):273, 123

               
               
               Conread position:785-1014
               
               
               Cow position:chr7:68263270-68263498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:785-1047
               
               
               Cow position:chr7:67815588-67815843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:785-1048
               
               
               Cow position:chr7:1601079-1600816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:785-1048
               
               
               Cow position:chr7:14135900-14135637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):135, 147

               
               
               Conread position:785-1067
               
               
               Cow position:chr7:60758244-60757960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):248, 280

               
               
               Conread position:785-1077
               
               
               Cow position:chr7:11461187-11460894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):269, 0

               
               
               Conread position:785-1083
               
               
               Cow position:chr7:34488856-34489155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:785-1089
               
               
               Cow position:chr7:194954-194649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):272, 0

               
               
               Conread position:785-1089
               
               
               Cow position:chr7:467628-467331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):269, 53

               
               
               Conread position:785-1089
               
               
               Cow position:chr7:10605146-10604843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):272, 146

               
               
               Conread position:785-1089
               
               
               Cow position:chr7:13530956-13530651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):272, 0

               
               
               Conread position:785-1089
               
               
               Cow position:chr7:18856117-18856438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:785-1089
               
               
               Cow position:chr7:36096013-36096294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:216
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):269, 72

               
               
               Conread position:785-1089
               
               
               Cow position:chr7:48814069-48814373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):136, 125

               
               
               Conread position:785-1089
               
               
               Cow position:chr7:52449510-52449206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:202
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):77, 12

               
               
               Conread position:785-1089
               
               
               Cow position:chr7:69065216-69065515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):263, 72

               
               
               Conread position:785-1108
               
               
               Cow position:chr7:528921-529245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):270, 0

               
               
               Conread position:785-1113
               
               
               Cow position:chr7:21989584-21989913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):272, 307

               
               
               Conread position:786-952
               
               
               Cow position:chr7:40990249-40990416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:786-976
               
               
               Cow position:chr7:26464749-26464938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):158, 0

               
               
               Conread position:786-1034
               
               
               Cow position:chr7:39595812-39595570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:186
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):204, 67

               
               
               Conread position:786-1049
               
               
               Cow position:chr7:49734216-49734481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:192
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):126, 78

               
               
               Conread position:786-1084
               
               
               Cow position:chr7:33069553-33069258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:213
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):207, 233

               
               
               Conread position:786-1089
               
               
               Cow position:chr7:27508339-27508637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):242, 55

               
               
               Conread position:786-1089
               
               
               Cow position:chr7:61424584-61424273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):32, 9

               
               
               Conread position:787-1083
               
               
               Cow position:chr7:34667842-34668136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):248, 107

               
               
               Conread position:787-1089
               
               
               Cow position:chr7:46748939-46749240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):270, 184

               
               
               Conread position:787-1089
               
               
               Cow position:chr7:60741987-60741685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):267, 209

               
               
               Conread position:787-1123
               
               
               Cow position:chr7:49827396-49827071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):268, 45

               
               
               Conread position:789-1089
               
               
               Cow position:chr7:22342316-22342019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:210
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):118, 86

               
               
               Conread position:790-1032
               
               
               Cow position:chr7:24852303-24852069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):55, 68

               
               
               Conread position:790-1082
               
               
               Cow position:chr7:20184115-20183822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):213, 48

               
               
               Conread position:790-1086
               
               
               Cow position:chr7:5207398-5207692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):136, 155

               
               
               Conread position:790-1089
               
               
               Cow position:chr7:63130505-63130798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):182, 148

               
               
               Conread position:795-1084
               
               
               Cow position:chr7:37922609-37922895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:195
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):260, 8

               
               
               Conread position:796-1044
               
               
               Cow position:chr7:65330684-65330441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):66, 22

               
               
               Conread position:796-1067
               
               
               Cow position:chr7:59243796-59244072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:196
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):87, 114

               
               
               Conread position:796-1083
               
               
               Cow position:chr7:64352925-64353217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:796-1084
               
               
               Cow position:chr7:1556363-1556649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 111

               
               
               Conread position:796-1089
               
               
               Cow position:chr7:57910331-57910620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):136, 0

               
               
               Conread position:796-1089
               
               
               Cow position:chr7:58718088-58718373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):258, 180

               
               
               Conread position:796-1095
               
               
               Cow position:chr7:3388497-3388790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):267, 54

               
               
               Conread position:797-1084
               
               
               Cow position:chr7:18500020-18499746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):257, 110

               
               
               Conread position:797-1089
               
               
               Cow position:chr7:21232047-21231762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 7

               
               
               Conread position:800-1089
               
               
               Cow position:chr7:34229766-34229477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):254, 14

               
               
               Conread position:801-1089
               
               
               Cow position:chr7:33718672-33718957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):253, 201

               
               
               Conread position:802-972
               
               
               Cow position:chr7:66224744-66224581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:802-1025
               
               
               Cow position:chr7:33281794-33281578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:802-1056
               
               
               Cow position:chr7:49071007-49070753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:189
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:802-1077
               
               
               Cow position:chr7:68445559-68445828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:201
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):251, 59

               
               
               Conread position:802-1084
               
               
               Cow position:chr7:19467527-19467247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):252, 11

               
               
               Conread position:802-1084
               
               
               Cow position:chr7:23816875-23817154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:802-1084
               
               
               Cow position:chr7:66011550-66011827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):212, 55

               
               
               Conread position:802-1089
               
               
               Cow position:chr7:12945-12657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):252, 0

               
               
               Conread position:802-1089
               
               
               Cow position:chr7:32713642-32713361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):254, 105

               
               
               Conread position:802-1089
               
               
               Cow position:chr7:63388962-63389247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):252, 131

               
               
               Conread position:802-1091
               
               
               Cow position:chr7:13821288-13821580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):41, 105

               
               
               Conread position:802-1108
               
               
               Cow position:chr7:34082400-34082702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:213
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):252, 24

               
               
               Conread position:802-1108
               
               
               Cow position:chr7:42297343-42297024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:233
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):60, 125

               
               
               Conread position:803-1074
               
               
               Cow position:chr7:67431511-67431784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 230

               
               
               Conread position:803-1084
               
               
               Cow position:chr7:33334418-33334698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):251, 159

               
               
               Conread position:803-1113
               
               
               Cow position:chr7:8742314-8741998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:804-1004
               
               
               Cow position:chr7:14538646-14538846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:114
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:804-1083
               
               
               Cow position:chr7:27394099-27394378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):253, 214

               
               
               Conread position:804-1108
               
               
               Cow position:chr7:12483172-12483477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):225, 214

               
               
               Conread position:805-1004
               
               
               Cow position:chr7:18425099-18424900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:805-1076
               
               
               Cow position:chr7:27233396-27233666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:174
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):146, 9

               
               
               Conread position:805-1077
               
               
               Cow position:chr7:67759204-67759474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:193
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):39, 103

               
               
               Conread position:805-1089
               
               
               Cow position:chr7:27576811-27576536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:206
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):249, 65

               
               
               Conread position:805-1089
               
               
               Cow position:chr7:57025094-57024810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:205
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):113, 164

               
               
               Conread position:805-1108
               
               
               Cow position:chr7:39552385-39552085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:212
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):26, 38

               
               
               Conread position:806-1077
               
               
               Cow position:chr7:259784-259520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):156, 13

               
               
               Conread position:807-966
               
               
               Cow position:chr7:8908-9065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:807-1050
               
               
               Cow position:chr7:27712269-27712510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:180
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:808-1089
               
               
               Cow position:chr7:20083113-20082831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):246, 0

               
               
               Conread position:811-1084
               
               
               Cow position:chr7:28881280-28881558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 248

               
               
               Conread position:811-1089
               
               
               Cow position:chr7:47910335-47910065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 0

               
               
               Conread position:812-1025
               
               
               Cow position:chr7:14078946-14078731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:812-1075
               
               
               Cow position:chr7:20938250-20938513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):204, 119

               
               
               Conread position:813-1047
               
               
               Cow position:chr7:33065742-33065519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:182
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:813-1055
               
               
               Cow position:chr7:59712225-59712471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):54, 88

               
               
               Conread position:813-1082
               
               
               Cow position:chr7:20542343-20542084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):245, 97

               
               
               Conread position:813-1089
               
               
               Cow position:chr7:31867254-31867527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):241, 27

               
               
               Conread position:813-1140
               
               
               Cow position:chr7:39850414-39850091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):241, 214

               
               
               Conread position:814-1054
               
               
               Cow position:chr7:3808009-3808247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):107, 96

               
               
               Conread position:814-1084
               
               
               Cow position:chr7:41747750-41747481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):240, 102

               
               
               Conread position:814-1088
               
               
               Cow position:chr7:58441530-58441798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):45, 57

               
               
               Conread position:814-1089
               
               
               Cow position:chr7:23913219-23913497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):199, 227

               
               
               Conread position:815-1089
               
               
               Cow position:chr7:6207577-6207843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):222, 12

               
               
               Conread position:816-1065
               
               
               Cow position:chr7:41324213-41323965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):126, 38

               
               
               Conread position:816-1083
               
               
               Cow position:chr7:59085905-59086179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):189, 83

               
               
               Conread position:816-1132
               
               
               Cow position:chr7:39397525-39397211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:206
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):76, 82

               
               
               Conread position:817-1080
               
               
               Cow position:chr7:65431922-65431665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:185
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):206, 109

               
               
               Conread position:817-1084
               
               
               Cow position:chr7:54187428-54187160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):237, 0

               
               
               Conread position:817-1089
               
               
               Cow position:chr7:25415917-25416190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):237, 0

               
               
               Conread position:817-1089
               
               
               Cow position:chr7:51406440-51406711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:193
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):147, 54

               
               
               Conread position:818-1077
               
               
               Cow position:chr7:57578505-57578253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):125, 39

               
               
               Conread position:818-1089
               
               
               Cow position:chr7:31877464-31877730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:195
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):241, 187

               
               
               Conread position:819-1003
               
               
               Cow position:chr7:5241662-5241478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:819-1089
               
               
               Cow position:chr7:56776-57055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):161, 43

               
               
               Conread position:819-1089
               
               
               Cow position:chr7:2152349-2152079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):186, 47

               
               
               Conread position:820-1084
               
               
               Cow position:chr7:62214292-62214558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):44, 52

               
               
               Conread position:821-1089
               
               
               Cow position:chr7:30414796-30415062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):233, 23

               
               
               Conread position:823-979
               
               
               Cow position:chr7:51840178-51840335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:824-1084
               
               
               Cow position:chr7:19882499-19882242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:188
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:824-1131
               
               
               Cow position:chr7:24874308-24874001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):233, 33

               
               
               Conread position:825-1089
               
               
               Cow position:chr7:64329667-64329928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 92

               
               
               Conread position:826-1003
               
               
               Cow position:chr7:20986043-20986219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):158, 0

               
               
               Conread position:826-1016
               
               
               Cow position:chr7:55635112-55634927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:826-1089
               
               
               Cow position:chr7:57185564-57185303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):229, 84

               
               
               Conread position:827-1089
               
               
               Cow position:chr7:20778896-20779158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:193
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):130, 58

               
               
               Conread position:828-1089
               
               
               Cow position:chr7:698503-698762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):79, 85

               
               
               Conread position:829-1109
               
               
               Cow position:chr7:7249772-7249491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):225, 263

               
               
               Conread position:833-1084
               
               
               Cow position:chr7:59876443-59876695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:169
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):221, 0

               
               
               Conread position:834-1089
               
               
               Cow position:chr7:61462891-61462642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):35, 61

               
               
               Conread position:835-1089
               
               
               Cow position:chr7:64237533-64237278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):32, 184

               
               
               Conread position:835-1140
               
               
               Cow position:chr7:42839291-42839595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:215
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):219, 62

               
               
               Conread position:836-1076
               
               
               Cow position:chr7:46899364-46899124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):221, 95

               
               
               Conread position:838-1008
               
               
               Cow position:chr7:27790074-27790240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:838-1112
               
               
               Cow position:chr7:26770555-26770829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:839-1008
               
               
               Cow position:chr7:48860704-48860537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):142, 0

               
               
               Conread position:839-1044
               
               
               Cow position:chr7:31762276-31762072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:158
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:840-1067
               
               
               Cow position:chr7:61772892-61772661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):166, 0

               
               
               Conread position:840-1069
               
               
               Cow position:chr7:69115415-69115643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):214, 54

               
               
               Conread position:842-1089
               
               
               Cow position:chr7:759851-759605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):215, 126

               
               
               Conread position:847-1089
               
               
               Cow position:chr7:20150717-20150474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:185
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):207, 0

               
               
               Conread position:848-1089
               
               
               Cow position:chr7:39420101-39419863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):205, 65

               
               
               Conread position:850-1004
               
               
               Cow position:chr7:63924701-63924548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):96, 111

               
               
               Conread position:851-1067
               
               
               Cow position:chr7:29346913-29346698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):203, 167

               
               
               Conread position:851-1108
               
               
               Cow position:chr7:1722108-1721857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):203, 17

               
               
               Conread position:854-1089
               
               
               Cow position:chr7:54547285-54547049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:182
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):204, 0

               
               
               Conread position:854-1108
               
               
               Cow position:chr7:49743143-49743396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):200, 66

               
               
               Conread position:855-1089
               
               
               Cow position:chr7:44456043-44455808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:190
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 29

               
               
               Conread position:856-1084
               
               
               Cow position:chr7:42695375-42695604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):106, 15

               
               
               Conread position:856-1108
               
               
               Cow position:chr7:49647124-49647384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:857-1031
               
               
               Cow position:chr7:27106500-27106673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):167, 0

               
               
               Conread position:857-1089
               
               
               Cow position:chr7:46187045-46187276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:176
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):200, 188

               
               
               Conread position:858-1113
               
               
               Cow position:chr7:18963729-18963976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):104, 136

               
               
               Conread position:871-1003
               
               
               Cow position:chr7:51845-51716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:874-1004
               
               
               Cow position:chr7:18872638-18872508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:101
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:874-1089
               
               
               Cow position:chr7:45100036-45100256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 0

               
               
               Conread position:874-1108
               
               
               Cow position:chr7:57209825-57209591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:173
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):180, 72

               
               
               Conread position:875-1089
               
               
               Cow position:chr7:48105069-48105282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):183, 143

               
               
               Conread position:876-1035
               
               
               Cow position:chr7:13853109-13853268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:876-1096
               
               
               Cow position:chr7:48018984-48019203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):86, 120

               
               
               Conread position:877-1089
               
               
               Cow position:chr7:20246061-20246273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):180, 53

               
               
               Conread position:877-1089
               
               
               Cow position:chr7:67871806-67872017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):176, 85

               
               
               Conread position:879-1083
               
               
               Cow position:chr7:56822675-56822471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:161
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):37, 28

               
               
               Conread position:879-1084
               
               
               Cow position:chr7:16844865-16845081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:879-1089
               
               
               Cow position:chr7:19264581-19264372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):156, 88

               
               
               Conread position:879-1089
               
               
               Cow position:chr7:52166831-52167043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:162
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):178, 0

               
               
               Conread position:880-1089
               
               
               Cow position:chr7:39400775-39400985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:166
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):33, 126

               
               
               Conread position:881-1087
               
               
               Cow position:chr7:14082149-14081941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:883-1089
               
               
               Cow position:chr7:10451210-10451002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):24, 173

               
               
               Conread position:883-1089
               
               
               Cow position:chr7:32957559-32957350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:151
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:883-1089
               
               
               Cow position:chr7:43110719-43110513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):171, 183

               
               
               Conread position:885-1089
               
               
               Cow position:chr7:547824-548029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:160
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):173, 0

               
               
               Conread position:885-1089
               
               
               Cow position:chr7:60279870-60279665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:160
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):169, 0

               
               
               Conread position:891-1089
               
               
               Cow position:chr7:19463792-19463593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):165, 0

               
               
               Conread position:895-1036
               
               
               Cow position:chr7:44745773-44745633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:105
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):136, 0

               
               
               Conread position:896-1010
               
               
               Cow position:chr7:52044234-52044348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:90
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:899-1089
               
               
               Cow position:chr7:18256874-18256683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):158, 0

               
               
               Conread position:899-1113
               
               
               Cow position:chr7:46460577-46460794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:909-1118
               
               
               Cow position:chr7:45010400-45010186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:914-1084
               
               
               Cow position:chr7:35742641-35742808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:132
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):140, 107

               
               
               Conread position:914-1089
               
               
               Cow position:chr7:34568037-34568213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):144, 0

               
               
               Conread position:915-1108
               
               
               Cow position:chr7:12331046-12330852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):143, 186

               
               
               Conread position:916-1089
               
               
               Cow position:chr7:59659573-59659750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:126
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:916-1091
               
               
               Cow position:chr7:6214524-6214700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):135, 0

               
               
               Conread position:922-1089
               
               
               Cow position:chr7:2577793-2577957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):131, 11

               
               
               Conread position:922-1089
               
               
               Cow position:chr7:30275095-30275259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):132, 21

               
               
               Conread position:922-1140
               
               
               Cow position:chr7:43281356-43281576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:171
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):132, 170

               
               
               Conread position:923-1087
               
               
               Cow position:chr7:30116131-30115970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:141
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):131, 46

               
               
               Conread position:924-1084
               
               
               Cow position:chr7:34973432-34973586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):134, 19

               
               
               Conread position:925-1076
               
               
               Cow position:chr7:27515956-27516105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):129, 93

               
               
               Conread position:928-1077
               
               
               Cow position:chr7:62469507-62469657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:928-1089
               
               
               Cow position:chr7:38188702-38188864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:928-1089
               
               
               Cow position:chr7:62255094-62255256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:935-1108
               
               
               Cow position:chr7:21568341-21568167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):119, 164

               
               
               Conread position:944-1089
               
               
               Cow position:chr7:66224567-66224422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:115
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):114, 74

               
               
               Conread position:946-1108
               
               
               Cow position:chr7:48242317-48242474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):145, 112

               
               
               Conread position:947-1084
               
               
               Cow position:chr7:5850198-5850061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:947-1140
               
               
               Cow position:chr7:955793-955986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):106, 70

               
               
               Conread position:955-1084
               
               
               Cow position:chr7:35428656-35428524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:105
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):91, 30

               
               
               Conread position:963-1089
               
               
               Cow position:chr7:5259053-5258927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:99
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):91, 66

               
               
               Conread position:964-1089
               
               
               Cow position:chr7:14131237-14131363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:99
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:964-1089
               
               
               Cow position:chr7:54483140-54483020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:102
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:968-1096
               
               
               Cow position:chr7:62732111-62732237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:101
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):125, 88

               
               
               Conread position:979-1089
               
               
               Cow position:chr7:22792004-22792115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:91
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:587-1089
               
               
               Cow position:chr8:24723730-24724234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:186
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:769-1088
               
               
               Cow position:chr8:6062361-6062040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 118

               
               
               Conread position:778-1089
               
               
               Cow position:chr8:18080098-18080404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):276, 8

               
               
               Conread position:781-995
               
               
               Cow position:chr8:34484981-34484771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:144
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:782-977
               
               
               Cow position:chr8:13633901-13634095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):146, 58

               
               
               Conread position:782-977
               
               
               Cow position:chr8:41969926-41969731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):175, 162

               
               
               Conread position:782-1014
               
               
               Cow position:chr8:3853903-3853667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:174
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:782-1044
               
               
               Cow position:chr8:32989687-32989423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):34, 78

               
               
               Conread position:782-1056
               
               
               Cow position:chr8:16092003-16092272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:200
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:782-1068
               
               
               Cow position:chr8:53980729-53981023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:207
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):144, 113

               
               
               Conread position:782-1077
               
               
               Cow position:chr8:1582622-1582901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:216
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):10, 76

               
               
               Conread position:782-1083
               
               
               Cow position:chr8:12056686-12056999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:221
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:782-1084
               
               
               Cow position:chr8:12539925-12539623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 126

               
               
               Conread position:782-1089
               
               
               Cow position:chr8:5020137-5020445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):273, 0

               
               
               Conread position:782-1089
               
               
               Cow position:chr8:47821362-47821073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):272, 32

               
               
               Conread position:782-1089
               
               
               Cow position:chr8:59258871-59258562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):135, 0

               
               
               Conread position:782-1089
               
               
               Cow position:chr8:59657664-59657972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 295

               
               
               Conread position:782-1108
               
               
               Cow position:chr8:14580753-14580425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:213
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):136, 125

               
               
               Conread position:782-1108
               
               
               Cow position:chr8:35212470-35212143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):189, 210

               
               
               Conread position:782-1108
               
               
               Cow position:chr8:56481638-56481312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:213
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):56, 151

               
               
               Conread position:782-1112
               
               
               Cow position:chr8:12780103-12779782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):272, 31

               
               
               Conread position:782-1112
               
               
               Cow position:chr8:26393759-26394093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:782-1118
               
               
               Cow position:chr8:38044000-38043662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):137, 98

               
               
               Conread position:783-905
               
               
               Cow position:chr8:38393766-38393888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:98
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-908
               
               
               Cow position:chr8:1017293-1017417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:97
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:783-908
               
               
               Cow position:chr8:3956171-3956296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:99
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-908
               
               
               Cow position:chr8:26606382-26606507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:95
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-938
               
               
               Cow position:chr8:12248391-12248546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-952
               
               
               Cow position:chr8:47888984-47889154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):141, 0

               
               
               Conread position:783-966
               
               
               Cow position:chr8:47359611-47359431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):156, 124

               
               
               Conread position:783-970
               
               
               Cow position:chr8:7250983-7251170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-982
               
               
               Cow position:chr8:18208805-18208614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):44, 30

               
               
               Conread position:783-991
               
               
               Cow position:chr8:42487041-42487249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:162
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-999
               
               
               Cow position:chr8:3334165-3334381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:166
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):136, 141

               
               
               Conread position:783-999
               
               
               Cow position:chr8:7051563-7051779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:171
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-1002
               
               
               Cow position:chr8:28882488-28882707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:165
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-1008
               
               
               Cow position:chr8:6748629-6748411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:163
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):148, 0

               
               
               Conread position:783-1016
               
               
               Cow position:chr8:11592272-11592497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:174
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:783-1016
               
               
               Cow position:chr8:21207847-21208087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):42, 144

               
               
               Conread position:783-1016
               
               
               Cow position:chr8:22960391-22960158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:181
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-1016
               
               
               Cow position:chr8:24873144-24872915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):187, 0

               
               
               Conread position:783-1028
               
               
               Cow position:chr8:7611849-7611614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:174
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:783-1029
               
               
               Cow position:chr8:45154187-45153944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):192, 88

               
               
               Conread position:783-1035
               
               
               Cow position:chr8:8667712-8667460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-1035
               
               
               Cow position:chr8:24192390-24192642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-1035
               
               
               Cow position:chr8:39775136-39774884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-1047
               
               
               Cow position:chr8:32434713-32434452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 138

               
               
               Conread position:783-1048
               
               
               Cow position:chr8:27153999-27153735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):195, 35

               
               
               Conread position:783-1051
               
               
               Cow position:chr8:1110314-1110581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 0

               
               
               Conread position:783-1060
               
               
               Cow position:chr8:29920821-29920539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):75, 139

               
               
               Conread position:783-1060
               
               
               Cow position:chr8:60266520-60266799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):225, 0

               
               
               Conread position:783-1064
               
               
               Cow position:chr8:44868544-44868824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:199
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):270, 0

               
               
               Conread position:783-1068
               
               
               Cow position:chr8:18290898-18290613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):52, 129

               
               
               Conread position:783-1068
               
               
               Cow position:chr8:27535731-27535446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:189
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):138, 127

               
               
               Conread position:783-1073
               
               
               Cow position:chr8:217177-216891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):270, 141

               
               
               Conread position:783-1077
               
               
               Cow position:chr8:45287-45581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):262, 179

               
               
               Conread position:783-1077
               
               
               Cow position:chr8:1345831-1345544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):270, 87

               
               
               Conread position:783-1077
               
               
               Cow position:chr8:1570255-1570550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1077
               
               
               Cow position:chr8:18484898-18485181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):136, 58

               
               
               Conread position:783-1077
               
               
               Cow position:chr8:46961139-46961434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1077
               
               
               Cow position:chr8:50683223-50682929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-1077
               
               
               Cow position:chr8:53885526-53885818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):271, 17

               
               
               Conread position:783-1080
               
               
               Cow position:chr8:1384713-1385017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):71, 15

               
               
               Conread position:783-1083
               
               
               Cow position:chr8:9687455-9687758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 286

               
               
               Conread position:783-1083
               
               
               Cow position:chr8:11373526-11373217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:222
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):168, 265

               
               
               Conread position:783-1083
               
               
               Cow position:chr8:17200879-17200579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):189, 160

               
               
               Conread position:783-1084
               
               
               Cow position:chr8:1322151-1322453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):275, 0

               
               
               Conread position:783-1084
               
               
               Cow position:chr8:8913857-8914159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 17

               
               
               Conread position:783-1084
               
               
               Cow position:chr8:14588740-14588438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1084
               
               
               Cow position:chr8:14925754-14925452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):273, 0

               
               
               Conread position:783-1084
               
               
               Cow position:chr8:16940838-16940535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):197, 0

               
               
               Conread position:783-1084
               
               
               Cow position:chr8:19052423-19052718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):136, 141

               
               
               Conread position:783-1084
               
               
               Cow position:chr8:19333708-19334021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):223, 0

               
               
               Conread position:783-1084
               
               
               Cow position:chr8:30417749-30418060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:221
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):53, 246

               
               
               Conread position:783-1084
               
               
               Cow position:chr8:44110205-44110496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:783-1084
               
               
               Cow position:chr8:45070062-45070364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):261, 272

               
               
               Conread position:783-1086
               
               
               Cow position:chr8:9994595-9994883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:212
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):254, 27

               
               
               Conread position:783-1086
               
               
               Cow position:chr8:42318136-42317832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1087
               
               
               Cow position:chr8:49719803-49720108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:215
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):222, 109

               
               
               Conread position:783-1088
               
               
               Cow position:chr8:6203154-6202849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 146

               
               
               Conread position:783-1089
               
               
               Cow position:chr8:1151158-1150854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 143

               
               
               Conread position:783-1089
               
               
               Cow position:chr8:1468258-1468565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr8:2167392-2167086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 21

               
               
               Conread position:783-1089
               
               
               Cow position:chr8:2888786-2889091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):166, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr8:3787554-3787864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 258

               
               
               Conread position:783-1089
               
               
               Cow position:chr8:4297849-4298145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):275, 55

               
               
               Conread position:783-1089
               
               
               Cow position:chr8:4309455-4309758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 95

               
               
               Conread position:783-1089
               
               
               Cow position:chr8:4689532-4689839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr8:4728495-4728190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 209

               
               
               Conread position:783-1089
               
               
               Cow position:chr8:7427770-7427480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):271, 155

               
               
               Conread position:783-1089
               
               
               Cow position:chr8:8016940-8016627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):265, 78

               
               
               Conread position:783-1089
               
               
               Cow position:chr8:8398997-8398704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):135, 50

               
               
               Conread position:783-1089
               
               
               Cow position:chr8:8468411-8468713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 55

               
               
               Conread position:783-1089
               
               
               Cow position:chr8:8523953-8524257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 13

               
               
               Conread position:783-1089
               
               
               Cow position:chr8:8553586-8553280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 102

               
               
               Conread position:783-1089
               
               
               Cow position:chr8:8903234-8902950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):269, 74

               
               
               Conread position:783-1089
               
               
               Cow position:chr8:10740443-10740137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 198

               
               
               Conread position:783-1089
               
               
               Cow position:chr8:10751480-10751787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr8:11781068-11781373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):212, 88

               
               
               Conread position:783-1089
               
               
               Cow position:chr8:12078677-12078370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr8:12287067-12287374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 230

               
               
               Conread position:783-1089
               
               
               Cow position:chr8:12311752-12311445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr8:13558392-13558705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):122, 70

               
               
               Conread position:783-1089
               
               
               Cow position:chr8:13831803-13831496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr8:14258218-14258522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 28

               
               
               Conread position:783-1089
               
               
               Cow position:chr8:14630095-14629788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr8:15223936-15224241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 194

               
               
               Conread position:783-1089
               
               
               Cow position:chr8:15865171-15864868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):267, 127

               
               
               Conread position:783-1089
               
               
               Cow position:chr8:16194251-16194557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr8:17314171-17314477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 213

               
               
               Conread position:783-1089
               
               
               Cow position:chr8:18403193-18402889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 166

               
               
               Conread position:783-1089
               
               
               Cow position:chr8:19893149-19893456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr8:21091199-21090892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr8:21118642-21118335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr8:21153165-21152860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr8:21234140-21234448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):138, 81

               
               
               Conread position:783-1089
               
               
               Cow position:chr8:21252373-21252679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 283

               
               
               Conread position:783-1089
               
               
               Cow position:chr8:22104712-22104395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:214
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr8:22377057-22376749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):269, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr8:22532093-22531787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 177

               
               
               Conread position:783-1089
               
               
               Cow position:chr8:23773768-23774073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 87

               
               
               Conread position:783-1089
               
               
               Cow position:chr8:24913164-24912857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr8:25413743-25414050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr8:25671430-25671731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):136, 81

               
               
               Conread position:783-1089
               
               
               Cow position:chr8:25773505-25773202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):137, 81

               
               
               Conread position:783-1089
               
               
               Cow position:chr8:26624545-26624852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr8:26869157-26869462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 88

               
               
               Conread position:783-1089
               
               
               Cow position:chr8:27943038-27942731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr8:29010776-29011082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 15

               
               
               Conread position:783-1089
               
               
               Cow position:chr8:30157814-30158121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr8:32041921-32042228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr8:32081400-32081104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):10, 130

               
               
               Conread position:783-1089
               
               
               Cow position:chr8:32315496-32315189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr8:32628878-32628572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 136

               
               
               Conread position:783-1089
               
               
               Cow position:chr8:32927193-32926898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):59, 121

               
               
               Conread position:783-1089
               
               
               Cow position:chr8:33591492-33591798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 61

               
               
               Conread position:783-1089
               
               
               Cow position:chr8:33854966-33855255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:208
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):121, 55

               
               
               Conread position:783-1089
               
               
               Cow position:chr8:33898786-33898480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 18

               
               
               Conread position:783-1089
               
               
               Cow position:chr8:34399677-34399981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):225, 106

               
               
               Conread position:783-1089
               
               
               Cow position:chr8:35128662-35128356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 229

               
               
               Conread position:783-1089
               
               
               Cow position:chr8:35472434-35472741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr8:37933446-37933752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):182, 74

               
               
               Conread position:783-1089
               
               
               Cow position:chr8:39140776-39141083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 18

               
               
               Conread position:783-1089
               
               
               Cow position:chr8:39192775-39192471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 123

               
               
               Conread position:783-1089
               
               
               Cow position:chr8:39740550-39740251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 71

               
               
               Conread position:783-1089
               
               
               Cow position:chr8:40584200-40584507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr8:41659678-41659371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):143, 31

               
               
               Conread position:783-1089
               
               
               Cow position:chr8:41950316-41950620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 21

               
               
               Conread position:783-1089
               
               
               Cow position:chr8:45338032-45337725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr8:46058631-46058326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 102

               
               
               Conread position:783-1089
               
               
               Cow position:chr8:46654739-46655044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 88

               
               
               Conread position:783-1089
               
               
               Cow position:chr8:47467248-47466942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 15

               
               
               Conread position:783-1089
               
               
               Cow position:chr8:47655664-47655364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:209
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):223, 57

               
               
               Conread position:783-1089
               
               
               Cow position:chr8:47659199-47658892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr8:50284086-50283779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):143, 149

               
               
               Conread position:783-1089
               
               
               Cow position:chr8:51020027-51019720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr8:51163643-51163943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:206
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):271, 127

               
               
               Conread position:783-1089
               
               
               Cow position:chr8:51603752-51603446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 210

               
               
               Conread position:783-1089
               
               
               Cow position:chr8:51674281-51674586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 45

               
               
               Conread position:783-1089
               
               
               Cow position:chr8:53004760-53004456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 74

               
               
               Conread position:783-1089
               
               
               Cow position:chr8:53838064-53838371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr8:55271396-55271089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr8:55303032-55303349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:227
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):140, 130

               
               
               Conread position:783-1089
               
               
               Cow position:chr8:55445279-55444972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr8:56255728-56256035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):172, 31

               
               
               Conread position:783-1089
               
               
               Cow position:chr8:60064234-60064539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 189

               
               
               Conread position:783-1089
               
               
               Cow position:chr8:60067012-60067317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):273, 131

               
               
               Conread position:783-1089
               
               
               Cow position:chr8:61099336-61099033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):10, 21

               
               
               Conread position:783-1090
               
               
               Cow position:chr8:12662041-12661738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:783-1092
               
               
               Cow position:chr8:11835664-11835972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 130

               
               
               Conread position:783-1095
               
               
               Cow position:chr8:14933999-14933690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):270, 45

               
               
               Conread position:783-1095
               
               
               Cow position:chr8:31977275-31976963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 18

               
               
               Conread position:783-1105
               
               
               Cow position:chr8:8975179-8974854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:783-1106
               
               
               Cow position:chr8:18577348-18577035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:226
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):62, 124

               
               
               Conread position:783-1108
               
               
               Cow position:chr8:8228270-8227943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 0

               
               
               Conread position:783-1108
               
               
               Cow position:chr8:13323053-13322729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):270, 91

               
               
               Conread position:783-1108
               
               
               Cow position:chr8:30484109-30483786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 131

               
               
               Conread position:783-1108
               
               
               Cow position:chr8:46950810-46951135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 72

               
               
               Conread position:783-1109
               
               
               Cow position:chr8:42745654-42745336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:214
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):122, 130

               
               
               Conread position:783-1113
               
               
               Cow position:chr8:8009522-8009848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):138, 94

               
               
               Conread position:783-1118
               
               
               Cow position:chr8:4273402-4273742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 191

               
               
               Conread position:783-1123
               
               
               Cow position:chr8:38089105-38089444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 259

               
               
               Conread position:783-1134
               
               
               Cow position:chr8:32649821-32650164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):200, 7

               
               
               Conread position:784-989
               
               
               Cow position:chr8:18055833-18056041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:784-1037
               
               
               Cow position:chr8:57280708-57280958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):112, 32

               
               
               Conread position:784-1041
               
               
               Cow position:chr8:2824166-2823911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:190
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):183, 0

               
               
               Conread position:784-1083
               
               
               Cow position:chr8:20675429-20675142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:209
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):56, 94

               
               
               Conread position:784-1087
               
               
               Cow position:chr8:8877102-8877404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):172, 16

               
               
               Conread position:784-1089
               
               
               Cow position:chr8:9738654-9738960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):270, 0

               
               
               Conread position:784-1089
               
               
               Cow position:chr8:22569162-22568856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):270, 0

               
               
               Conread position:784-1089
               
               
               Cow position:chr8:40550150-40549845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):270, 16

               
               
               Conread position:784-1089
               
               
               Cow position:chr8:51254514-51254209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):270, 35

               
               
               Conread position:784-1090
               
               
               Cow position:chr8:11227114-11226809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:213
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):137, 73

               
               
               Conread position:784-1095
               
               
               Cow position:chr8:12452186-12452497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):273, 308

               
               
               Conread position:784-1096
               
               
               Cow position:chr8:27956803-27956515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:232
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):119, 46

               
               
               Conread position:784-1123
               
               
               Cow position:chr8:21218869-21219197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):309, 48

               
               
               Conread position:785-960
               
               
               Cow position:chr8:6466009-6466184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:785-1002
               
               
               Cow position:chr8:13936200-13935982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:171
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:785-1019
               
               
               Cow position:chr8:16025122-16024890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:156
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):218, 144

               
               
               Conread position:785-1058
               
               
               Cow position:chr8:24230565-24230833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:785-1076
               
               
               Cow position:chr8:19823430-19823146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:785-1077
               
               
               Cow position:chr8:1018481-1018193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):266, 28

               
               
               Conread position:785-1077
               
               
               Cow position:chr8:19360739-19361021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):250, 72

               
               
               Conread position:785-1077
               
               
               Cow position:chr8:45142289-45142010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:208
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):95, 86

               
               
               Conread position:785-1084
               
               
               Cow position:chr8:12446262-12445964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):268, 0

               
               
               Conread position:785-1084
               
               
               Cow position:chr8:45355349-45355050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):269, 206

               
               
               Conread position:785-1089
               
               
               Cow position:chr8:4923038-4923340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 186

               
               
               Conread position:785-1089
               
               
               Cow position:chr8:8514943-8514638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):270, 0

               
               
               Conread position:785-1089
               
               
               Cow position:chr8:11804916-11805218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):272, 11

               
               
               Conread position:785-1089
               
               
               Cow position:chr8:12150438-12150743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:212
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):8, 17

               
               
               Conread position:785-1089
               
               
               Cow position:chr8:24869072-24868772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):269, 15

               
               
               Conread position:785-1089
               
               
               Cow position:chr8:36633300-36632993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 65

               
               
               Conread position:785-1089
               
               
               Cow position:chr8:45792586-45792290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):272, 178

               
               
               Conread position:785-1089
               
               
               Cow position:chr8:49415388-49415686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):273, 220

               
               
               Conread position:785-1089
               
               
               Cow position:chr8:50431007-50430703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):211, 128

               
               
               Conread position:785-1089
               
               
               Cow position:chr8:50927970-50927665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:785-1091
               
               
               Cow position:chr8:34406574-34406871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):72, 86

               
               
               Conread position:785-1106
               
               
               Cow position:chr8:1998306-1998639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:232
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:785-1112
               
               
               Cow position:chr8:34110863-34111193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:220
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):146, 53

               
               
               Conread position:786-1076
               
               
               Cow position:chr8:49284929-49284639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 37

               
               
               Conread position:786-1089
               
               
               Cow position:chr8:38574524-38574226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):255, 12

               
               
               Conread position:786-1094
               
               
               Cow position:chr8:24903991-24904291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):230, 90

               
               
               Conread position:787-1089
               
               
               Cow position:chr8:31252488-31252793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 31

               
               
               Conread position:787-1089
               
               
               Cow position:chr8:38016176-38015880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):7, 52

               
               
               Conread position:787-1089
               
               
               Cow position:chr8:44124189-44124489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):261, 132

               
               
               Conread position:787-1108
               
               
               Cow position:chr8:47667427-47667104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):165, 0

               
               
               Conread position:788-1089
               
               
               Cow position:chr8:13373263-13373559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):175, 25

               
               
               Conread position:789-1048
               
               
               Cow position:chr8:31885333-31885590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:189
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:792-1089
               
               
               Cow position:chr8:29918830-29918531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 264

               
               
               Conread position:793-1044
               
               
               Cow position:chr8:13736689-13736939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:793-1084
               
               
               Cow position:chr8:35798852-35799136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):253, 174

               
               
               Conread position:793-1089
               
               
               Cow position:chr8:16758673-16758382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):261, 21

               
               
               Conread position:796-1031
               
               
               Cow position:chr8:49520396-49520633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:182
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:797-1088
               
               
               Cow position:chr8:46481139-46480842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):159, 0

               
               
               Conread position:800-1077
               
               
               Cow position:chr8:2237467-2237195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:187
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):10, 140

               
               
               Conread position:800-1089
               
               
               Cow position:chr8:29031523-29031242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):236, 71

               
               
               Conread position:801-1089
               
               
               Cow position:chr8:1108479-1108194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):248, 0

               
               
               Conread position:801-1089
               
               
               Cow position:chr8:34396962-34397244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):15, 70

               
               
               Conread position:802-1002
               
               
               Cow position:chr8:5680033-5679831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:138
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:802-1054
               
               
               Cow position:chr8:26878410-26878662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:164
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:802-1077
               
               
               Cow position:chr8:44050855-44051125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:185
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):235, 36

               
               
               Conread position:802-1084
               
               
               Cow position:chr8:26496656-26496936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:181
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):163, 94

               
               
               Conread position:802-1089
               
               
               Cow position:chr8:816635-816923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):252, 0

               
               
               Conread position:802-1089
               
               
               Cow position:chr8:8136212-8135924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):252, 0

               
               
               Conread position:802-1089
               
               
               Cow position:chr8:22281010-22281292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):235, 22

               
               
               Conread position:802-1089
               
               
               Cow position:chr8:26878692-26878977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):252, 228

               
               
               Conread position:802-1089
               
               
               Cow position:chr8:38562287-38562006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):255, 52

               
               
               Conread position:802-1089
               
               
               Cow position:chr8:42440867-42441154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 36

               
               
               Conread position:802-1090
               
               
               Cow position:chr8:23223932-23224208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):251, 182

               
               
               Conread position:802-1118
               
               
               Cow position:chr8:12089763-12090078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):119, 55

               
               
               Conread position:803-1067
               
               
               Cow position:chr8:1116111-1115851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:189
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:804-1089
               
               
               Cow position:chr8:24386312-24386030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:184
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):179, 76

               
               
               Conread position:804-1089
               
               
               Cow position:chr8:50316389-50316107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):239, 24

               
               
               Conread position:804-1089
               
               
               Cow position:chr8:51061990-51061705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 99

               
               
               Conread position:805-1028
               
               
               Cow position:chr8:51505783-51506002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:151
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):57, 33

               
               
               Conread position:805-1031
               
               
               Cow position:chr8:37503707-37503923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:805-1083
               
               
               Cow position:chr8:27561998-27561723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):116, 57

               
               
               Conread position:805-1086
               
               
               Cow position:chr8:48082787-48083067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):116, 105

               
               
               Conread position:805-1089
               
               
               Cow position:chr8:4746150-4745861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:208
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):80, 167

               
               
               Conread position:805-1089
               
               
               Cow position:chr8:58855836-58856114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:206
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):248, 66

               
               
               Conread position:805-1108
               
               
               Cow position:chr8:38295287-38294983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):121, 9

               
               
               Conread position:806-1083
               
               
               Cow position:chr8:61521229-61521503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):247, 43

               
               
               Conread position:806-1084
               
               
               Cow position:chr8:51505618-51505342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:188
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):240, 62

               
               
               Conread position:806-1089
               
               
               Cow position:chr8:39166235-39165964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:204
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:807-1089
               
               
               Cow position:chr8:19868218-19868500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:187
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):39, 31

               
               
               Conread position:807-1089
               
               
               Cow position:chr8:33692132-33692419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):76, 37

               
               
               Conread position:808-1034
               
               
               Cow position:chr8:11137185-11137409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:171
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):162, 0

               
               
               Conread position:808-1089
               
               
               Cow position:chr8:18657573-18657295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):246, 83

               
               
               Conread position:809-1089
               
               
               Cow position:chr8:12805926-12806204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):207, 153

               
               
               Conread position:810-1035
               
               
               Cow position:chr8:21727929-21728149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:158
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:810-1089
               
               
               Cow position:chr8:51701729-51702002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:205
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):260, 47

               
               
               Conread position:812-1064
               
               
               Cow position:chr8:43476728-43476977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):241, 132

               
               
               Conread position:813-1089
               
               
               Cow position:chr8:6439418-6439140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:202
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):212, 37

               
               
               Conread position:813-1089
               
               
               Cow position:chr8:8393853-8393576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):241, 0

               
               
               Conread position:814-1075
               
               
               Cow position:chr8:49619603-49619865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):243, 0

               
               
               Conread position:815-1089
               
               
               Cow position:chr8:45171605-45171344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):241, 9

               
               
               Conread position:817-960
               
               
               Cow position:chr8:33046821-33046963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:817-1069
               
               
               Cow position:chr8:37267692-37267936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:818-1067
               
               
               Cow position:chr8:31258907-31259149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:170
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):43, 19

               
               
               Conread position:818-1089
               
               
               Cow position:chr8:9170286-9170016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 7

               
               
               Conread position:820-1111
               
               
               Cow position:chr8:47996534-47996252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:821-1032
               
               
               Cow position:chr8:47675999-47676208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:822-1070
               
               
               Cow position:chr8:38895374-38895626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):119, 19

               
               
               Conread position:824-1084
               
               
               Cow position:chr8:14301870-14302125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):230, 51

               
               
               Conread position:824-1089
               
               
               Cow position:chr8:45688663-45688401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):234, 50

               
               
               Conread position:825-939
               
               
               Cow position:chr8:49220159-49220273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:90
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:825-1107
               
               
               Cow position:chr8:51825779-51825499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):225, 46

               
               
               Conread position:826-1084
               
               
               Cow position:chr8:38597465-38597218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):135, 54

               
               
               Conread position:828-1084
               
               
               Cow position:chr8:45165965-45165712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):226, 29

               
               
               Conread position:830-1048
               
               
               Cow position:chr8:38629223-38629441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:167
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:832-1089
               
               
               Cow position:chr8:12740962-12740704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 26

               
               
               Conread position:832-1108
               
               
               Cow position:chr8:20673463-20673197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):226, 128

               
               
               Conread position:834-1084
               
               
               Cow position:chr8:3291952-3291714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):220, 23

               
               
               Conread position:834-1089
               
               
               Cow position:chr8:36333496-36333240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):223, 0

               
               
               Conread position:834-1089
               
               
               Cow position:chr8:37715314-37715557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):220, 23

               
               
               Conread position:835-1089
               
               
               Cow position:chr8:6852349-6852604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):219, 0

               
               
               Conread position:835-1089
               
               
               Cow position:chr8:7167143-7167396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):222, 22

               
               
               Conread position:835-1089
               
               
               Cow position:chr8:11767857-11768119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:183
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):86, 77

               
               
               Conread position:835-1112
               
               
               Cow position:chr8:45191152-45191429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):144, 36

               
               
               Conread position:837-1089
               
               
               Cow position:chr8:13544848-13544595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):217, 0

               
               
               Conread position:837-1089
               
               
               Cow position:chr8:51000498-51000754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):228, 0

               
               
               Conread position:839-1025
               
               
               Cow position:chr8:45131528-45131339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):140, 0

               
               
               Conread position:839-1064
               
               
               Cow position:chr8:39516833-39516607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:172
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):215, 0

               
               
               Conread position:844-1075
               
               
               Cow position:chr8:12794591-12794822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:176
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):120, 88

               
               
               Conread position:844-1083
               
               
               Cow position:chr8:26013465-26013705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:184
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):213, 0

               
               
               Conread position:847-1089
               
               
               Cow position:chr8:3659398-3659155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):207, 0

               
               
               Conread position:850-1108
               
               
               Cow position:chr8:25342396-25342655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):66, 57

               
               
               Conread position:850-1116
               
               
               Cow position:chr8:1009851-1009586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):205, 37

               
               
               Conread position:854-1084
               
               
               Cow position:chr8:46800542-46800319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):200, 164

               
               
               Conread position:854-1089
               
               
               Cow position:chr8:22030317-22030553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:182
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):200, 0

               
               
               Conread position:856-1076
               
               
               Cow position:chr8:1935528-1935748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:168
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):211, 60

               
               
               Conread position:856-1083
               
               
               Cow position:chr8:41741847-41742074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):198, 99

               
               
               Conread position:856-1089
               
               
               Cow position:chr8:37169757-37169520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:160
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):149, 165

               
               
               Conread position:856-1094
               
               
               Cow position:chr8:5244236-5243998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):15, 190

               
               
               Conread position:857-1084
               
               
               Cow position:chr8:7105690-7105462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):14, 52

               
               
               Conread position:857-1089
               
               
               Cow position:chr8:8653150-8652917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):197, 0

               
               
               Conread position:857-1089
               
               
               Cow position:chr8:19296617-19296383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):111, 135

               
               
               Conread position:861-1089
               
               
               Cow position:chr8:18568684-18568462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):196, 91

               
               
               Conread position:863-1089
               
               
               Cow position:chr8:26306608-26306388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):191, 143

               
               
               Conread position:874-1077
               
               
               Cow position:chr8:5195335-5195539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:159
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):180, 0

               
               
               Conread position:874-1089
               
               
               Cow position:chr8:15789524-15789740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:164
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):180, 0

               
               
               Conread position:874-1113
               
               
               Cow position:chr8:45246889-45246657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:183
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):184, 144

               
               
               Conread position:877-1087
               
               
               Cow position:chr8:43859289-43859078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):177, 0

               
               
               Conread position:879-1088
               
               
               Cow position:chr8:1159144-1158933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:143
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:881-1089
               
               
               Cow position:chr8:46143223-46143432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:166
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):173, 0

               
               
               Conread position:887-1108
               
               
               Cow position:chr8:53450290-53450503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:150
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):167, 108

               
               
               Conread position:888-1089
               
               
               Cow position:chr8:13223108-13222906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):177, 0

               
               
               Conread position:892-1089
               
               
               Cow position:chr8:33408172-33407980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):25, 77

               
               
               Conread position:897-1089
               
               
               Cow position:chr8:53120624-53120818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):128, 0

               
               
               Conread position:903-1069
               
               
               Cow position:chr8:53252874-53252708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):133, 151

               
               
               Conread position:903-1087
               
               
               Cow position:chr8:46744386-46744200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):97, 88

               
               
               Conread position:914-1089
               
               
               Cow position:chr8:8386805-8386979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:146
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):140, 48

               
               
               Conread position:919-1108
               
               
               Cow position:chr8:53428659-53428850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:923-1089
               
               
               Cow position:chr8:51455881-51455718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:924-1095
               
               
               Cow position:chr8:17268787-17268624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:137
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:926-1089
               
               
               Cow position:chr8:19256592-19256431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):128, 103

               
               
               Conread position:928-1084
               
               
               Cow position:chr8:52862147-52862298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:928-1089
               
               
               Cow position:chr8:1500674-1500512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:125
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:928-1089
               
               
               Cow position:chr8:3956456-3956618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:128
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:928-1089
               
               
               Cow position:chr8:26606758-26606920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:128
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):129, 0

               
               
               Conread position:929-1089
               
               
               Cow position:chr8:17489716-17489558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:116
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:931-1089
               
               
               Cow position:chr8:47077459-47077617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):113, 123

               
               
               Conread position:935-1089
               
               
               Cow position:chr8:19283742-19283897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:937-1125
               
               
               Cow position:chr8:42748333-42748521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):118, 184

               
               
               Conread position:942-1089
               
               
               Cow position:chr8:23119479-23119627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:118
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:942-1089
               
               
               Cow position:chr8:49220477-49220625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:117
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:943-1089
               
               
               Cow position:chr8:12248140-12247993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:952-1089
               
               
               Cow position:chr8:61197970-61197832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:112
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:957-1089
               
               
               Cow position:chr8:35528985-35529118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:102
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:972-1089
               
               
               Cow position:chr8:33045682-33045564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:93
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:973-1118
               
               
               Cow position:chr8:17913114-17912968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:114
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):81, 119

               
               
               Conread position:984-1108
               
               
               Cow position:chr8:18056614-18056739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:101
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):70, 115

               
               
               Conread position:344-1089
               
               
               Cow position:chr9:59496839-59496091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:749
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:719-1089
               
               
               Cow position:chr9:41313321-41312949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:185
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):142, 0

               
               
               Conread position:757-1089
               
               
               Cow position:chr9:63671228-63671562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:223
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):298, 0

               
               
               Conread position:776-1028
               
               
               Cow position:chr9:2631351-2631599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):154, 0

               
               
               Conread position:777-1067
               
               
               Cow position:chr9:50063156-50062867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):33, 38

               
               
               Conread position:780-961
               
               
               Cow position:chr9:23859936-23859756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):29, 17

               
               
               Conread position:782-901
               
               
               Cow position:chr9:7005503-7005622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:97
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:782-951
               
               
               Cow position:chr9:53573780-53573947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:123
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):139, 127

               
               
               Conread position:782-1061
               
               
               Cow position:chr9:649266-648987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):129, 56

               
               
               Conread position:782-1077
               
               
               Cow position:chr9:8097940-8098235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):45, 99

               
               
               Conread position:782-1077
               
               
               Cow position:chr9:27897794-27898086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 31

               
               
               Conread position:782-1084
               
               
               Cow position:chr9:31113947-31114234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:221
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):201, 124

               
               
               Conread position:782-1089
               
               
               Cow position:chr9:6252353-6252660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):275, 37

               
               
               Conread position:782-1089
               
               
               Cow position:chr9:8952253-8951941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 0

               
               
               Conread position:782-1089
               
               
               Cow position:chr9:10325729-10326036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):275, 202

               
               
               Conread position:782-1089
               
               
               Cow position:chr9:12250777-12251069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:207
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):272, 112

               
               
               Conread position:782-1089
               
               
               Cow position:chr9:18507040-18506732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):275, 0

               
               
               Conread position:782-1089
               
               
               Cow position:chr9:28024603-28024911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):275, 0

               
               
               Conread position:782-1089
               
               
               Cow position:chr9:30401075-30401374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:782-1089
               
               
               Cow position:chr9:34059849-34059541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):275, 0

               
               
               Conread position:782-1089
               
               
               Cow position:chr9:44168374-44168681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):272, 86

               
               
               Conread position:782-1090
               
               
               Cow position:chr9:2856628-2856937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):272, 0

               
               
               Conread position:782-1090
               
               
               Cow position:chr9:4306285-4305984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:216
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):125, 0

               
               
               Conread position:782-1108
               
               
               Cow position:chr9:17008179-17007848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 321

               
               
               Conread position:783-908
               
               
               Cow position:chr9:42718669-42718794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:99
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-908
               
               
               Cow position:chr9:56301655-56301530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-917
               
               
               Cow position:chr9:34240314-34240180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:106
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-923
               
               
               Cow position:chr9:17061855-17061718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:108
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:783-935
               
               
               Cow position:chr9:27782105-27781953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):10, 18

               
               
               Conread position:783-947
               
               
               Cow position:chr9:202505-202335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:783-947
               
               
               Cow position:chr9:1000250-1000414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-960
               
               
               Cow position:chr9:35543743-35543566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-976
               
               
               Cow position:chr9:1430025-1429836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:783-1001
               
               
               Cow position:chr9:9261181-9261403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:162
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):63, 138

               
               
               Conread position:783-1002
               
               
               Cow position:chr9:8283423-8283204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-1003
               
               
               Cow position:chr9:33068709-33068486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):196, 37

               
               
               Conread position:783-1004
               
               
               Cow position:chr9:55474645-55474861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:161
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):130, 0

               
               
               Conread position:783-1007
               
               
               Cow position:chr9:43845411-43845636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):143, 0

               
               
               Conread position:783-1008
               
               
               Cow position:chr9:34554382-34554162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):138, 17

               
               
               Conread position:783-1015
               
               
               Cow position:chr9:2288365-2288143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:163
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):127, 0

               
               
               Conread position:783-1016
               
               
               Cow position:chr9:3934861-3934638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:173
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:783-1026
               
               
               Cow position:chr9:9094293-9094535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:189
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:783-1035
               
               
               Cow position:chr9:3052197-3051945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-1035
               
               
               Cow position:chr9:50003233-50003485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-1037
               
               
               Cow position:chr9:18007411-18007669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:188
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):179, 106

               
               
               Conread position:783-1040
               
               
               Cow position:chr9:55031300-55031556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):190, 0

               
               
               Conread position:783-1048
               
               
               Cow position:chr9:43493729-43493994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-1056
               
               
               Cow position:chr9:41507061-41506788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-1060
               
               
               Cow position:chr9:30737460-30737737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 20

               
               
               Conread position:783-1064
               
               
               Cow position:chr9:26277439-26277709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 116

               
               
               Conread position:783-1066
               
               
               Cow position:chr9:21461264-21461545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 92

               
               
               Conread position:783-1068
               
               
               Cow position:chr9:128066-127783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:783-1068
               
               
               Cow position:chr9:25976315-25976598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:204
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):275, 196

               
               
               Conread position:783-1068
               
               
               Cow position:chr9:26123508-26123790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:783-1076
               
               
               Cow position:chr9:34696030-34696333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):223, 164

               
               
               Conread position:783-1076
               
               
               Cow position:chr9:47170832-47171131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:783-1077
               
               
               Cow position:chr9:1099379-1099674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1077
               
               
               Cow position:chr9:3389016-3388720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:208
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):57, 80

               
               
               Conread position:783-1077
               
               
               Cow position:chr9:13472776-13472483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 190

               
               
               Conread position:783-1081
               
               
               Cow position:chr9:9327280-9326992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):96, 73

               
               
               Conread position:783-1082
               
               
               Cow position:chr9:37097407-37097692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:217
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):133, 80

               
               
               Conread position:783-1083
               
               
               Cow position:chr9:22655598-22655897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):273, 54

               
               
               Conread position:783-1083
               
               
               Cow position:chr9:32972152-32972453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1083
               
               
               Cow position:chr9:62444189-62443890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 74

               
               
               Conread position:783-1084
               
               
               Cow position:chr9:2208883-2208582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):270, 208

               
               
               Conread position:783-1084
               
               
               Cow position:chr9:2527073-2527374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-1084
               
               
               Cow position:chr9:17303187-17302886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 67

               
               
               Conread position:783-1084
               
               
               Cow position:chr9:35747099-35746798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:213
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):250, 73

               
               
               Conread position:783-1084
               
               
               Cow position:chr9:40143569-40143264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 137

               
               
               Conread position:783-1084
               
               
               Cow position:chr9:44203284-44202993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 47

               
               
               Conread position:783-1084
               
               
               Cow position:chr9:52002310-52002024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):253, 83

               
               
               Conread position:783-1084
               
               
               Cow position:chr9:52723191-52723494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 75

               
               
               Conread position:783-1085
               
               
               Cow position:chr9:3576487-3576178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:783-1088
               
               
               Cow position:chr9:27930234-27930548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:214
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):71, 137

               
               
               Conread position:783-1088
               
               
               Cow position:chr9:49283629-49283930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:210
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):138, 124

               
               
               Conread position:783-1089
               
               
               Cow position:chr9:35762-35459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 18

               
               
               Conread position:783-1089
               
               
               Cow position:chr9:218330-218024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):272, 136

               
               
               Conread position:783-1089
               
               
               Cow position:chr9:778029-777721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):221, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr9:1062910-1062604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 297

               
               
               Conread position:783-1089
               
               
               Cow position:chr9:1249212-1248905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):270, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr9:1991750-1991460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 114

               
               
               Conread position:783-1089
               
               
               Cow position:chr9:2173321-2173624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 17

               
               
               Conread position:783-1089
               
               
               Cow position:chr9:2484831-2484525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 137

               
               
               Conread position:783-1089
               
               
               Cow position:chr9:2495956-2495649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 18

               
               
               Conread position:783-1089
               
               
               Cow position:chr9:2595452-2595750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:212
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr9:2873259-2873566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):273, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr9:3061376-3061679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 230

               
               
               Conread position:783-1089
               
               
               Cow position:chr9:3545612-3545919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):136, 141

               
               
               Conread position:783-1089
               
               
               Cow position:chr9:4647852-4647549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:214
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):228, 92

               
               
               Conread position:783-1089
               
               
               Cow position:chr9:4940713-4940407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 153

               
               
               Conread position:783-1089
               
               
               Cow position:chr9:5006768-5007065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 18

               
               
               Conread position:783-1089
               
               
               Cow position:chr9:5328562-5328260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:213
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):137, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr9:5430252-5430558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 242

               
               
               Conread position:783-1089
               
               
               Cow position:chr9:5452855-5452548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr9:5627604-5627911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr9:6549962-6550269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr9:7059277-7058958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 11

               
               
               Conread position:783-1089
               
               
               Cow position:chr9:7104446-7104139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr9:9015859-9016166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):136, 146

               
               
               Conread position:783-1089
               
               
               Cow position:chr9:9198889-9199188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:211
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):270, 13

               
               
               Conread position:783-1089
               
               
               Cow position:chr9:10856805-10857112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr9:10939509-10939816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr9:12260579-12260273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 258

               
               
               Conread position:783-1089
               
               
               Cow position:chr9:13220327-13220632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 236

               
               
               Conread position:783-1089
               
               
               Cow position:chr9:13312350-13312655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 189

               
               
               Conread position:783-1089
               
               
               Cow position:chr9:14002825-14003129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 155

               
               
               Conread position:783-1089
               
               
               Cow position:chr9:15053095-15052797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):208, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr9:16178372-16178679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr9:17017539-17017846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr9:18539450-18539754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 45

               
               
               Conread position:783-1089
               
               
               Cow position:chr9:21412097-21412404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr9:23044256-23044560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 112

               
               
               Conread position:783-1089
               
               
               Cow position:chr9:24423106-24423413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr9:26325531-26325838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):275, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr9:27037893-27038199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 252

               
               
               Conread position:783-1089
               
               
               Cow position:chr9:28680985-28681292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr9:28785127-28785436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):169, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr9:30475059-30475349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:222
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):271, 103

               
               
               Conread position:783-1089
               
               
               Cow position:chr9:31093134-31092833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:212
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):177, 88

               
               
               Conread position:783-1089
               
               
               Cow position:chr9:31417719-31417424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 58

               
               
               Conread position:783-1089
               
               
               Cow position:chr9:37158825-37158518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr9:37174620-37174313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr9:39303768-39303461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr9:40416271-40415971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):79, 30

               
               
               Conread position:783-1089
               
               
               Cow position:chr9:41053501-41053806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:203
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):34, 22

               
               
               Conread position:783-1089
               
               
               Cow position:chr9:42570001-42570306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 180

               
               
               Conread position:783-1089
               
               
               Cow position:chr9:43225916-43225609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr9:43495919-43496226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr9:43667617-43667920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):269, 17

               
               
               Conread position:783-1089
               
               
               Cow position:chr9:45876305-45876610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 18

               
               
               Conread position:783-1089
               
               
               Cow position:chr9:46525420-46525114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):133, 55

               
               
               Conread position:783-1089
               
               
               Cow position:chr9:46627098-46627403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 43

               
               
               Conread position:783-1089
               
               
               Cow position:chr9:46668015-46667706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 14

               
               
               Conread position:783-1089
               
               
               Cow position:chr9:47044732-47045039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr9:48795507-48795200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr9:50840218-50840524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 235

               
               
               Conread position:783-1089
               
               
               Cow position:chr9:52037164-52037466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):27, 134

               
               
               Conread position:783-1089
               
               
               Cow position:chr9:52401744-52402051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr9:52525936-52526243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr9:53530505-53530808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:214
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):271, 149

               
               
               Conread position:783-1089
               
               
               Cow position:chr9:54459716-54459410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 18

               
               
               Conread position:783-1089
               
               
               Cow position:chr9:55797319-55797012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):166, 67

               
               
               Conread position:783-1089
               
               
               Cow position:chr9:56176555-56176862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr9:59196642-59196948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr9:59480063-59479756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chr9:61198569-61198262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:222
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):93, 32

               
               
               Conread position:783-1089
               
               
               Cow position:chr9:64012444-64012137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1090
               
               
               Cow position:chr9:826149-825832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):79, 130

               
               
               Conread position:783-1090
               
               
               Cow position:chr9:38678913-38679211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 126

               
               
               Conread position:783-1091
               
               
               Cow position:chr9:17301345-17301033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):196, 287

               
               
               Conread position:783-1092
               
               
               Cow position:chr9:39813100-39813410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1094
               
               
               Cow position:chr9:4128159-4127845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 117

               
               
               Conread position:783-1095
               
               
               Cow position:chr9:10567581-10567268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):210, 310

               
               
               Conread position:783-1095
               
               
               Cow position:chr9:59431293-59431600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:208
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):232, 111

               
               
               Conread position:783-1096
               
               
               Cow position:chr9:35593303-35592991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 36

               
               
               Conread position:783-1108
               
               
               Cow position:chr9:3757046-3756719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 310

               
               
               Conread position:783-1108
               
               
               Cow position:chr9:5269497-5269834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:230
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):49, 76

               
               
               Conread position:783-1108
               
               
               Cow position:chr9:6708132-6707807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 155

               
               
               Conread position:783-1108
               
               
               Cow position:chr9:20941259-20941583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):272, 188

               
               
               Conread position:783-1118
               
               
               Cow position:chr9:30282216-30281895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:228
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):271, 112

               
               
               Conread position:783-1118
               
               
               Cow position:chr9:30674860-30675196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):133, 127

               
               
               Conread position:783-1127
               
               
               Cow position:chr9:31810363-31810708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 95

               
               
               Conread position:784-1004
               
               
               Cow position:chr9:11157576-11157358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:169
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):176, 0

               
               
               Conread position:784-1014
               
               
               Cow position:chr9:3412131-3411906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):12, 17

               
               
               Conread position:784-1089
               
               
               Cow position:chr9:6764986-6764680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):273, 0

               
               
               Conread position:784-1089
               
               
               Cow position:chr9:6886378-6886687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 293

               
               
               Conread position:784-1089
               
               
               Cow position:chr9:12161394-12161687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):241, 0

               
               
               Conread position:784-1089
               
               
               Cow position:chr9:17870280-17870586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):270, 0

               
               
               Conread position:784-1089
               
               
               Cow position:chr9:20577661-20577963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):269, 81

               
               
               Conread position:784-1089
               
               
               Cow position:chr9:22442276-22442583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:218
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):73, 129

               
               
               Conread position:784-1089
               
               
               Cow position:chr9:22569891-22570197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 129

               
               
               Conread position:784-1089
               
               
               Cow position:chr9:62130820-62131130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):41, 105

               
               
               Conread position:784-1108
               
               
               Cow position:chr9:18071272-18071593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 64

               
               
               Conread position:784-1108
               
               
               Cow position:chr9:59508387-59508068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):270, 107

               
               
               Conread position:785-1008
               
               
               Cow position:chr9:1259066-1259277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:785-1026
               
               
               Cow position:chr9:1726949-1726711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:177
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:785-1075
               
               
               Cow position:chr9:22438141-22438449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:225
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):147, 229

               
               
               Conread position:785-1083
               
               
               Cow position:chr9:14045460-14045759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 176

               
               
               Conread position:785-1084
               
               
               Cow position:chr9:5516977-5517270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:211
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):250, 53

               
               
               Conread position:785-1084
               
               
               Cow position:chr9:9577595-9577883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:198
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):270, 216

               
               
               Conread position:785-1089
               
               
               Cow position:chr9:3806385-3806688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:213
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):269, 107

               
               
               Conread position:785-1089
               
               
               Cow position:chr9:3997971-3997668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):269, 187

               
               
               Conread position:785-1089
               
               
               Cow position:chr9:9958396-9958092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):133, 71

               
               
               Conread position:785-1089
               
               
               Cow position:chr9:26100665-26100364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):268, 129

               
               
               Conread position:785-1089
               
               
               Cow position:chr9:28658262-28657960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):262, 0

               
               
               Conread position:785-1089
               
               
               Cow position:chr9:47005528-47005834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):134, 0

               
               
               Conread position:785-1089
               
               
               Cow position:chr9:49457111-49457420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:219
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):52, 110

               
               
               Conread position:785-1089
               
               
               Cow position:chr9:54995424-54995732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):194, 0

               
               
               Conread position:785-1089
               
               
               Cow position:chr9:58190251-58190541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:201
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:785-1094
               
               
               Cow position:chr9:14794640-14794942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 73

               
               
               Conread position:785-1114
               
               
               Cow position:chr9:3729836-3730162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):312, 53

               
               
               Conread position:785-1118
               
               
               Cow position:chr9:1998508-1998174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):273, 261

               
               
               Conread position:786-1068
               
               
               Cow position:chr9:28774454-28774172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:786-1077
               
               
               Cow position:chr9:24996037-24996325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):262, 88

               
               
               Conread position:786-1088
               
               
               Cow position:chr9:23421379-23421677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 187

               
               
               Conread position:786-1089
               
               
               Cow position:chr9:26088210-26087910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):268, 15

               
               
               Conread position:786-1089
               
               
               Cow position:chr9:37067637-37067936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):175, 15

               
               
               Conread position:787-1089
               
               
               Cow position:chr9:1071495-1071192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):267, 0

               
               
               Conread position:788-1095
               
               
               Cow position:chr9:34688163-34688460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):139, 82

               
               
               Conread position:789-1077
               
               
               Cow position:chr9:61740244-61739956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):265, 83

               
               
               Conread position:789-1089
               
               
               Cow position:chr9:1939241-1938941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):264, 122

               
               
               Conread position:790-1089
               
               
               Cow position:chr9:5608971-5608673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:212
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):131, 44

               
               
               Conread position:795-1087
               
               
               Cow position:chr9:2864764-2864475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:203
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):259, 182

               
               
               Conread position:796-1048
               
               
               Cow position:chr9:26081520-26081271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:190
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):39, 175

               
               
               Conread position:796-1067
               
               
               Cow position:chr9:62669752-62669485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:195
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):258, 72

               
               
               Conread position:796-1089
               
               
               Cow position:chr9:3960369-3960091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):258, 111

               
               
               Conread position:796-1089
               
               
               Cow position:chr9:33844812-33845110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):210, 275

               
               
               Conread position:800-1089
               
               
               Cow position:chr9:13180725-13181011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:802-966
               
               
               Cow position:chr9:3547820-3547656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:128
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:802-997
               
               
               Cow position:chr9:47814115-47814310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:133
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:802-1019
               
               
               Cow position:chr9:60322491-60322281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):119, 8

               
               
               Conread position:802-1031
               
               
               Cow position:chr9:11712735-11712966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):135, 30

               
               
               Conread position:802-1076
               
               
               Cow position:chr9:6304569-6304294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):252, 0

               
               
               Conread position:802-1081
               
               
               Cow position:chr9:27099142-27099420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:186
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):254, 203

               
               
               Conread position:802-1083
               
               
               Cow position:chr9:56166610-56166337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:189
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):252, 64

               
               
               Conread position:802-1089
               
               
               Cow position:chr9:2835191-2834908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):251, 53

               
               
               Conread position:802-1089
               
               
               Cow position:chr9:6365181-6365469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):252, 0

               
               
               Conread position:802-1089
               
               
               Cow position:chr9:8405218-8405505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):160, 81

               
               
               Conread position:802-1089
               
               
               Cow position:chr9:22319609-22319323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):234, 78

               
               
               Conread position:802-1108
               
               
               Cow position:chr9:26054850-26055157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 108

               
               
               Conread position:803-1006
               
               
               Cow position:chr9:1850809-1850607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:156
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:803-1084
               
               
               Cow position:chr9:791510-791225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):113, 84

               
               
               Conread position:803-1084
               
               
               Cow position:chr9:2213939-2214226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):213, 54

               
               
               Conread position:803-1084
               
               
               Cow position:chr9:36845122-36844842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):251, 201

               
               
               Conread position:803-1089
               
               
               Cow position:chr9:20988111-20988391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):251, 35

               
               
               Conread position:805-1028
               
               
               Cow position:chr9:36484840-36484620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:805-1047
               
               
               Cow position:chr9:43643845-43643604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:165
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:805-1076
               
               
               Cow position:chr9:60460688-60460424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:188
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):249, 108

               
               
               Conread position:805-1077
               
               
               Cow position:chr9:17633288-17633567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):201, 40

               
               
               Conread position:805-1084
               
               
               Cow position:chr9:1516086-1516370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:201
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):130, 0

               
               
               Conread position:805-1089
               
               
               Cow position:chr9:34946215-34945922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:805-1090
               
               
               Cow position:chr9:11504788-11505073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:204
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):230, 27

               
               
               Conread position:805-1108
               
               
               Cow position:chr9:36584804-36585105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):114, 102

               
               
               Conread position:805-1128
               
               
               Cow position:chr9:3438387-3438699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):144, 66

               
               
               Conread position:808-1089
               
               
               Cow position:chr9:3222284-3222566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 87

               
               
               Conread position:809-1108
               
               
               Cow position:chr9:52408514-52408217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:212
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):248, 209

               
               
               Conread position:810-1071
               
               
               Cow position:chr9:46669768-46670031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:811-1089
               
               
               Cow position:chr9:50775520-50775798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):50, 97

               
               
               Conread position:812-1089
               
               
               Cow position:chr9:52036494-52036766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):50, 104

               
               
               Conread position:813-1089
               
               
               Cow position:chr9:24918473-24918196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):242, 0

               
               
               Conread position:813-1089
               
               
               Cow position:chr9:64049090-64049366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:191
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):241, 180

               
               
               Conread position:813-1118
               
               
               Cow position:chr9:29193745-29193447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:215
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):241, 40

               
               
               Conread position:814-908
               
               
               Cow position:chr9:52661409-52661315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:95
               
               
               Alignm identity:80
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:814-1031
               
               
               Cow position:chr9:9312487-9312276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:147
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:815-1114
               
               
               Cow position:chr9:62734339-62734045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:190
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):178, 115

               
               
               Conread position:817-1003
               
               
               Cow position:chr9:30438559-30438747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:817-1089
               
               
               Cow position:chr9:26280664-26280934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):237, 58

               
               
               Conread position:818-1016
               
               
               Cow position:chr9:50728368-50728170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:818-1083
               
               
               Cow position:chr9:1404631-1404896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):44, 24

               
               
               Conread position:819-1089
               
               
               Cow position:chr9:60564783-60564516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):142, 0

               
               
               Conread position:820-1084
               
               
               Cow position:chr9:6329567-6329307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:184
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):56, 31

               
               
               Conread position:820-1089
               
               
               Cow position:chr9:1640077-1640347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:191
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):87, 96

               
               
               Conread position:820-1089
               
               
               Cow position:chr9:47110095-47110354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):226, 71

               
               
               Conread position:821-1031
               
               
               Cow position:chr9:62717628-62717833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:145
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:824-1016
               
               
               Cow position:chr9:20315009-20315201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:141
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:824-1089
               
               
               Cow position:chr9:19156467-19156200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):148, 0

               
               
               Conread position:825-1083
               
               
               Cow position:chr9:30139781-30139522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 90

               
               
               Conread position:825-1083
               
               
               Cow position:chr9:38633607-38633866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):232, 0

               
               
               Conread position:825-1089
               
               
               Cow position:chr9:2548868-2548603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):232, 0

               
               
               Conread position:827-1108
               
               
               Cow position:chr9:51692791-51692509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):227, 0

               
               
               Conread position:828-1069
               
               
               Cow position:chr9:18327494-18327247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):72, 184

               
               
               Conread position:830-1089
               
               
               Cow position:chr9:45791680-45791940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):224, 0

               
               
               Conread position:831-1089
               
               
               Cow position:chr9:24874113-24873858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):226, 101

               
               
               Conread position:832-1076
               
               
               Cow position:chr9:53776535-53776780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:180
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):222, 137

               
               
               Conread position:834-1108
               
               
               Cow position:chr9:56862311-56862054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):162, 41

               
               
               Conread position:835-1086
               
               
               Cow position:chr9:14797254-14797497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:165
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:835-1089
               
               
               Cow position:chr9:37253241-37253496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):219, 0

               
               
               Conread position:836-1035
               
               
               Cow position:chr9:61238113-61237915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):85, 71

               
               
               Conread position:838-1084
               
               
               Cow position:chr9:10110842-10111082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:174
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):52, 67

               
               
               Conread position:842-1089
               
               
               Cow position:chr9:43856693-43856446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:190
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):214, 149

               
               
               Conread position:844-1089
               
               
               Cow position:chr9:3217486-3217242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):161, 13

               
               
               Conread position:844-1089
               
               
               Cow position:chr9:51010413-51010653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:184
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):108, 160

               
               
               Conread position:847-1089
               
               
               Cow position:chr9:2681402-2681644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:187
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:850-1077
               
               
               Cow position:chr9:17587997-17588217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:164
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):156, 21

               
               
               Conread position:850-1089
               
               
               Cow position:chr9:26575691-26575929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:168
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):204, 93

               
               
               Conread position:850-1089
               
               
               Cow position:chr9:54413755-54413517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:180
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):204, 99

               
               
               Conread position:854-1026
               
               
               Cow position:chr9:2102498-2102669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):137, 0

               
               
               Conread position:854-1033
               
               
               Cow position:chr9:43579756-43579935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:856-1002
               
               
               Cow position:chr9:44218095-44218239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:107
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:857-1069
               
               
               Cow position:chr9:40130764-40130977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):14, 149

               
               
               Conread position:857-1076
               
               
               Cow position:chr9:10679066-10678849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):191, 155

               
               
               Conread position:857-1084
               
               
               Cow position:chr9:29337769-29337992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):198, 45

               
               
               Conread position:857-1089
               
               
               Cow position:chr9:5534053-5533822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:168
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):56, 94

               
               
               Conread position:857-1089
               
               
               Cow position:chr9:9649053-9649281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):114, 74

               
               
               Conread position:858-1083
               
               
               Cow position:chr9:29787817-29787591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):177, 172

               
               
               Conread position:860-1089
               
               
               Cow position:chr9:49754551-49754322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):30, 20

               
               
               Conread position:861-1083
               
               
               Cow position:chr9:39728762-39728524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:871-1089
               
               
               Cow position:chr9:44518796-44518578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:159
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):175, 52

               
               
               Conread position:872-1089
               
               
               Cow position:chr9:27487035-27486819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):184, 66

               
               
               Conread position:874-1076
               
               
               Cow position:chr9:23005684-23005478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:874-1089
               
               
               Cow position:chr9:6549395-6549611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:165
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):180, 0

               
               
               Conread position:874-1089
               
               
               Cow position:chr9:33477778-33477997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):150, 0

               
               
               Conread position:874-1089
               
               
               Cow position:chr9:44820642-44820846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):38, 60

               
               
               Conread position:883-1108
               
               
               Cow position:chr9:42868984-42868762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):10, 28

               
               
               Conread position:885-1089
               
               
               Cow position:chr9:9021718-9021513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:158
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):169, 0

               
               
               Conread position:888-1089
               
               
               Cow position:chr9:1837845-1838047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:156
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):166, 0

               
               
               Conread position:894-1089
               
               
               Cow position:chr9:19303161-19302965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):160, 0

               
               
               Conread position:896-1108
               
               
               Cow position:chr9:12285809-12285597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):161, 196

               
               
               Conread position:900-1108
               
               
               Cow position:chr9:31077862-31078067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):154, 70

               
               
               Conread position:901-1089
               
               
               Cow position:chr9:37181765-37181954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):153, 0

               
               
               Conread position:904-1089
               
               
               Cow position:chr9:382980-382797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):7, 23

               
               
               Conread position:911-1089
               
               
               Cow position:chr9:33843237-33843415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):141, 85

               
               
               Conread position:914-1064
               
               
               Cow position:chr9:5525402-5525248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:121
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:914-1088
               
               
               Cow position:chr9:34761669-34761844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:124
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):139, 0

               
               
               Conread position:916-1089
               
               
               Cow position:chr9:62764389-62764215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:125
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):5, 103

               
               
               Conread position:919-1090
               
               
               Cow position:chr9:34238838-34238666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):135, 0

               
               
               Conread position:920-1089
               
               
               Cow position:chr9:7458803-7458633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):134, 0

               
               
               Conread position:920-1089
               
               
               Cow position:chr9:18109623-18109794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:131
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):131, 0

               
               
               Conread position:920-1089
               
               
               Cow position:chr9:20409309-20409476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:132
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):134, 21

               
               
               Conread position:923-1108
               
               
               Cow position:chr9:50326623-50326807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:105
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):131, 58

               
               
               Conread position:926-1089
               
               
               Cow position:chr9:7005669-7005833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):131, 0

               
               
               Conread position:928-1089
               
               
               Cow position:chr9:13187134-13187296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:928-1118
               
               
               Cow position:chr9:17061426-17061236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:146
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):126, 34

               
               
               Conread position:932-1089
               
               
               Cow position:chr9:9210077-9210235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:124
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:933-1108
               
               
               Cow position:chr9:31124011-31124187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:132
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:934-1089
               
               
               Cow position:chr9:18830676-18830830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:937-1084
               
               
               Cow position:chr9:7844846-7844701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:112
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):119, 30

               
               
               Conread position:942-1089
               
               
               Cow position:chr9:9871883-9872031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:117
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:956-1089
               
               
               Cow position:chr9:51178711-51178577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):5, 92

               
               
               Conread position:958-1089
               
               
               Cow position:chr9:174813-174681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:102
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:958-1108
               
               
               Cow position:chr9:34900426-34900578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:964-1089
               
               
               Cow position:chr9:27781946-27781820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:100
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:990-1089
               
               
               Cow position:chr9:44920229-44920327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:101
               
               
               Alignm identity:89
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):64, 92

               
               
               Conread position:487-1089
               
               
               Cow position:chrX:30200590-30199992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:604
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):567, 439

               
               
               Conread position:781-1019
               
               
               Cow position:chrX:16407243-16407481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):156, 147

               
               
               Conread position:781-1089
               
               
               Cow position:chrX:24260682-24260374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:214
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):273, 150

               
               
               Conread position:782-1066
               
               
               Cow position:chrX:25052228-25051945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):17, 22

               
               
               Conread position:782-1067
               
               
               Cow position:chrX:29765692-29765978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):276, 0

               
               
               Conread position:782-1067
               
               
               Cow position:chrX:37761402-37761684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:194
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):139, 50

               
               
               Conread position:782-1068
               
               
               Cow position:chrX:21627735-21627453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):272, 62

               
               
               Conread position:782-1077
               
               
               Cow position:chrX:16023767-16024059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:209
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):272, 97

               
               
               Conread position:782-1077
               
               
               Cow position:chrX:18289391-18289097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):18, 22

               
               
               Conread position:782-1084
               
               
               Cow position:chrX:5278640-5278346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:201
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):273, 124

               
               
               Conread position:782-1084
               
               
               Cow position:chrX:13406594-13406291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):275, 0

               
               
               Conread position:782-1084
               
               
               Cow position:chrX:20363446-20363141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:212
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):48, 61

               
               
               Conread position:782-1084
               
               
               Cow position:chrX:21318141-21318447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:207
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):63, 131

               
               
               Conread position:782-1084
               
               
               Cow position:chrX:40828409-40828111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):272, 19

               
               
               Conread position:782-1087
               
               
               Cow position:chrX:23315108-23314804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):253, 15

               
               
               Conread position:782-1088
               
               
               Cow position:chrX:20733269-20733574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):226, 40

               
               
               Conread position:782-1089
               
               
               Cow position:chrX:2271313-2271619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):37, 30

               
               
               Conread position:782-1089
               
               
               Cow position:chrX:3581627-3581937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):117, 165

               
               
               Conread position:782-1089
               
               
               Cow position:chrX:7096151-7096459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):272, 0

               
               
               Conread position:782-1089
               
               
               Cow position:chrX:15978259-15977953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:782-1089
               
               
               Cow position:chrX:16854673-16854365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):275, 0

               
               
               Conread position:782-1089
               
               
               Cow position:chrX:17523533-17523228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:197
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):251, 32

               
               
               Conread position:782-1089
               
               
               Cow position:chrX:24345741-24346049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):272, 0

               
               
               Conread position:782-1089
               
               
               Cow position:chrX:26623113-26622808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:214
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):260, 228

               
               
               Conread position:782-1089
               
               
               Cow position:chrX:30286103-30286406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):275, 103

               
               
               Conread position:782-1089
               
               
               Cow position:chrX:38962154-38961850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):272, 75

               
               
               Conread position:782-1108
               
               
               Cow position:chrX:32129467-32129796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 152

               
               
               Conread position:782-1108
               
               
               Cow position:chrX:41847841-41847510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 120

               
               
               Conread position:783-908
               
               
               Cow position:chrX:23453359-23453234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-908
               
               
               Cow position:chrX:40694009-40693884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:99
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):20, 12

               
               
               Conread position:783-917
               
               
               Cow position:chrX:14459712-14459578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:106
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-924
               
               
               Cow position:chrX:28648188-28648047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:104
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-949
               
               
               Cow position:chrX:37814844-37815010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:130
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-950
               
               
               Cow position:chrX:9086403-9086570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-958
               
               
               Cow position:chrX:18243658-18243483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):10, 18

               
               
               Conread position:783-965
               
               
               Cow position:chrX:20725664-20725846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-977
               
               
               Cow position:chrX:12312308-12312114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:146
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-979
               
               
               Cow position:chrX:12345635-12345831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-993
               
               
               Cow position:chrX:39694502-39694707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:157
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):27, 126

               
               
               Conread position:783-995
               
               
               Cow position:chrX:34553088-34553293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):80, 142

               
               
               Conread position:783-1002
               
               
               Cow position:chrX:46296061-46296278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:169
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:783-1003
               
               
               Cow position:chrX:4481392-4481612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-1003
               
               
               Cow position:chrX:29891799-29892013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:783-1004
               
               
               Cow position:chrX:13431236-13431021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:152
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):173, 39

               
               
               Conread position:783-1008
               
               
               Cow position:chrX:41305495-41305270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-1015
               
               
               Cow position:chrX:9261043-9261275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:186
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-1022
               
               
               Cow position:chrX:38150290-38150531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:182
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):233, 0

               
               
               Conread position:783-1026
               
               
               Cow position:chrX:2487340-2487578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):239, 51

               
               
               Conread position:783-1026
               
               
               Cow position:chrX:2501282-2501524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:183
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):239, 57

               
               
               Conread position:783-1032
               
               
               Cow position:chrX:35023425-35023668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:183
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):62, 87

               
               
               Conread position:783-1035
               
               
               Cow position:chrX:1948736-1948484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-1035
               
               
               Cow position:chrX:3418524-3418272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-1035
               
               
               Cow position:chrX:3465668-3465416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-1035
               
               
               Cow position:chrX:24928488-24928740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-1040
               
               
               Cow position:chrX:29941876-29942127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):10, 18

               
               
               Conread position:783-1047
               
               
               Cow position:chrX:21750816-21750552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 17

               
               
               Conread position:783-1048
               
               
               Cow position:chrX:5550074-5550339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-1048
               
               
               Cow position:chrX:22837675-22837940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-1060
               
               
               Cow position:chrX:21494129-21494409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:208
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):10, 18

               
               
               Conread position:783-1069
               
               
               Cow position:chrX:13282161-13282447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 208

               
               
               Conread position:783-1069
               
               
               Cow position:chrX:28606391-28606109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 18

               
               
               Conread position:783-1075
               
               
               Cow position:chrX:16035814-16035522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:206
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):132, 74

               
               
               Conread position:783-1075
               
               
               Cow position:chrX:23022011-23022304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1075
               
               
               Cow position:chrX:35532549-35532842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1076
               
               
               Cow position:chrX:10867157-10866869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 70

               
               
               Conread position:783-1076
               
               
               Cow position:chrX:28625060-28624767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 74

               
               
               Conread position:783-1076
               
               
               Cow position:chrX:29082769-29083054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:783-1076
               
               
               Cow position:chrX:29877831-29877548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:202
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):12, 18

               
               
               Conread position:783-1077
               
               
               Cow position:chrX:2009012-2008709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 251

               
               
               Conread position:783-1077
               
               
               Cow position:chrX:5321020-5320726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):270, 226

               
               
               Conread position:783-1077
               
               
               Cow position:chrX:8435505-8435211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-1077
               
               
               Cow position:chrX:14125550-14125256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):219, 57

               
               
               Conread position:783-1077
               
               
               Cow position:chrX:27595532-27595238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 227

               
               
               Conread position:783-1077
               
               
               Cow position:chrX:28212513-28212809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:205
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:783-1077
               
               
               Cow position:chrX:29094625-29094330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1077
               
               
               Cow position:chrX:29171087-29170793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 109

               
               
               Conread position:783-1081
               
               
               Cow position:chrX:6044759-6044458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:217
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):136, 71

               
               
               Conread position:783-1082
               
               
               Cow position:chrX:19877537-19877835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):173, 121

               
               
               Conread position:783-1083
               
               
               Cow position:chrX:18951037-18950742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 45

               
               
               Conread position:783-1083
               
               
               Cow position:chrX:26446793-26447092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 185

               
               
               Conread position:783-1083
               
               
               Cow position:chrX:27978137-27977838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 17

               
               
               Conread position:783-1084
               
               
               Cow position:chrX:387827-388128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):254, 117

               
               
               Conread position:783-1084
               
               
               Cow position:chrX:2299588-2299890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 117

               
               
               Conread position:783-1084
               
               
               Cow position:chrX:2382160-2382461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):263, 55

               
               
               Conread position:783-1084
               
               
               Cow position:chrX:5298547-5298245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1084
               
               
               Cow position:chrX:7754599-7754901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1084
               
               
               Cow position:chrX:11074460-11074167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):272, 86

               
               
               Conread position:783-1084
               
               
               Cow position:chrX:11458121-11457819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1084
               
               
               Cow position:chrX:14597550-14597841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):275, 219

               
               
               Conread position:783-1084
               
               
               Cow position:chrX:21767497-21767795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 74

               
               
               Conread position:783-1084
               
               
               Cow position:chrX:24175251-24174955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):138, 15

               
               
               Conread position:783-1084
               
               
               Cow position:chrX:24444362-24444060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 106

               
               
               Conread position:783-1084
               
               
               Cow position:chrX:26507943-26508228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:219
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):194, 71

               
               
               Conread position:783-1087
               
               
               Cow position:chrX:6580628-6580933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chrX:322609-322914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 18

               
               
               Conread position:783-1089
               
               
               Cow position:chrX:672298-671993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 246

               
               
               Conread position:783-1089
               
               
               Cow position:chrX:1549658-1549965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chrX:2047807-2048112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 74

               
               
               Conread position:783-1089
               
               
               Cow position:chrX:2479935-2479628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chrX:2560254-2559960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chrX:2579114-2579419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 18

               
               
               Conread position:783-1089
               
               
               Cow position:chrX:2813782-2813483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):273, 216

               
               
               Conread position:783-1089
               
               
               Cow position:chrX:3082440-3082134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):275, 300

               
               
               Conread position:783-1089
               
               
               Cow position:chrX:3360515-3360821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 18

               
               
               Conread position:783-1089
               
               
               Cow position:chrX:3373158-3372852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 74

               
               
               Conread position:783-1089
               
               
               Cow position:chrX:4134220-4133914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 189

               
               
               Conread position:783-1089
               
               
               Cow position:chrX:4300246-4299940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:218
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):33, 248

               
               
               Conread position:783-1089
               
               
               Cow position:chrX:4326996-4326680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):221, 145

               
               
               Conread position:783-1089
               
               
               Cow position:chrX:4342445-4342751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 189

               
               
               Conread position:783-1089
               
               
               Cow position:chrX:4623260-4622953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chrX:4906302-4905987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 154

               
               
               Conread position:783-1089
               
               
               Cow position:chrX:5289991-5289684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chrX:5294652-5294347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 20

               
               
               Conread position:783-1089
               
               
               Cow position:chrX:5332738-5332431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):270, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chrX:5354607-5354300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):272, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chrX:5360703-5361010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):270, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chrX:5426784-5427091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chrX:5865839-5866146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chrX:7120300-7120607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):138, 127

               
               
               Conread position:783-1089
               
               
               Cow position:chrX:7484500-7484807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):270, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chrX:7552108-7551801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chrX:7572084-7572391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 18

               
               
               Conread position:783-1089
               
               
               Cow position:chrX:9011027-9011331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):160, 102

               
               
               Conread position:783-1089
               
               
               Cow position:chrX:9067764-9068065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):255, 16

               
               
               Conread position:783-1089
               
               
               Cow position:chrX:9095336-9095643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chrX:9127748-9128055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chrX:9169912-9169605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chrX:10529091-10528784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):272, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chrX:11409641-11409334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chrX:11462300-11461993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chrX:11743965-11744270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 90

               
               
               Conread position:783-1089
               
               
               Cow position:chrX:12144792-12145099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chrX:12308069-12307762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chrX:12359578-12359888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):233, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chrX:13071752-13071445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 45

               
               
               Conread position:783-1089
               
               
               Cow position:chrX:13092312-13092005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 45

               
               
               Conread position:783-1089
               
               
               Cow position:chrX:13929040-13928742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):270, 74

               
               
               Conread position:783-1089
               
               
               Cow position:chrX:14462014-14462320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 219

               
               
               Conread position:783-1089
               
               
               Cow position:chrX:14782652-14782345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chrX:15260922-15260615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chrX:15621838-15621531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chrX:16040984-16040679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):234, 148

               
               
               Conread position:783-1089
               
               
               Cow position:chrX:16278353-16278656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 74

               
               
               Conread position:783-1089
               
               
               Cow position:chrX:16360309-16360007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 18

               
               
               Conread position:783-1089
               
               
               Cow position:chrX:16702375-16702671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):133, 127

               
               
               Conread position:783-1089
               
               
               Cow position:chrX:16710660-16710956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 155

               
               
               Conread position:783-1089
               
               
               Cow position:chrX:16804173-16803867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chrX:16809120-16808814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chrX:17054264-17054568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 100

               
               
               Conread position:783-1089
               
               
               Cow position:chrX:17782195-17782500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 64

               
               
               Conread position:783-1089
               
               
               Cow position:chrX:18024299-18023992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chrX:18222106-18222411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 298

               
               
               Conread position:783-1089
               
               
               Cow position:chrX:19398471-19398778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):275, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chrX:19474455-19474148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chrX:19608370-19608675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 102

               
               
               Conread position:783-1089
               
               
               Cow position:chrX:21226173-21226479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 215

               
               
               Conread position:783-1089
               
               
               Cow position:chrX:21389271-21389578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):197, 190

               
               
               Conread position:783-1089
               
               
               Cow position:chrX:21582135-21582443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):135, 141

               
               
               Conread position:783-1089
               
               
               Cow position:chrX:21832579-21832886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chrX:21892201-21892508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chrX:22077647-22077340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chrX:22492729-22493034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 18

               
               
               Conread position:783-1089
               
               
               Cow position:chrX:22539341-22539033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chrX:22564991-22564683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):232, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chrX:22579683-22579387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 61

               
               
               Conread position:783-1089
               
               
               Cow position:chrX:23222333-23222032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):173, 185

               
               
               Conread position:783-1089
               
               
               Cow position:chrX:23342298-23341991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chrX:23573124-23572817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 176

               
               
               Conread position:783-1089
               
               
               Cow position:chrX:24316509-24316814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 15

               
               
               Conread position:783-1089
               
               
               Cow position:chrX:24321934-24321628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):272, 35

               
               
               Conread position:783-1089
               
               
               Cow position:chrX:24412720-24413027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):270, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chrX:24468428-24468123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 120

               
               
               Conread position:783-1089
               
               
               Cow position:chrX:24483669-24483362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chrX:24589034-24588734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 74

               
               
               Conread position:783-1089
               
               
               Cow position:chrX:24734357-24734664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chrX:24770163-24769856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chrX:25451029-25451336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 251

               
               
               Conread position:783-1089
               
               
               Cow position:chrX:26231065-26230758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chrX:26442553-26442250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):275, 20

               
               
               Conread position:783-1089
               
               
               Cow position:chrX:26617824-26618124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):270, 74

               
               
               Conread position:783-1089
               
               
               Cow position:chrX:26755946-26755639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 20

               
               
               Conread position:783-1089
               
               
               Cow position:chrX:27070528-27070847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:212
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):79, 149

               
               
               Conread position:783-1089
               
               
               Cow position:chrX:27304624-27304929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 246

               
               
               Conread position:783-1089
               
               
               Cow position:chrX:27317924-27318231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):273, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chrX:27423575-27423271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 46

               
               
               Conread position:783-1089
               
               
               Cow position:chrX:27591327-27591023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 155

               
               
               Conread position:783-1089
               
               
               Cow position:chrX:27754118-27754428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chrX:27983660-27983351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):227, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chrX:28519018-28518720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chrX:28587676-28587972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 221

               
               
               Conread position:783-1089
               
               
               Cow position:chrX:28879883-28879581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):275, 127

               
               
               Conread position:783-1089
               
               
               Cow position:chrX:29099113-29099419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 102

               
               
               Conread position:783-1089
               
               
               Cow position:chrX:29225171-29225478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chrX:29759394-29759690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):138, 127

               
               
               Conread position:783-1089
               
               
               Cow position:chrX:29791115-29790815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):275, 74

               
               
               Conread position:783-1089
               
               
               Cow position:chrX:29908509-29908202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):275, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chrX:29912034-29912341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chrX:30053775-30053468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chrX:30073129-30073427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:214
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):12, 18

               
               
               Conread position:783-1089
               
               
               Cow position:chrX:30435925-30435618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chrX:30836080-30836387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chrX:30965293-30964986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chrX:31201534-31201841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chrX:31979146-31978840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 235

               
               
               Conread position:783-1089
               
               
               Cow position:chrX:32064474-32064167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chrX:32145563-32145255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 18

               
               
               Conread position:783-1089
               
               
               Cow position:chrX:32328901-32329209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 30

               
               
               Conread position:783-1089
               
               
               Cow position:chrX:33583380-33583693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:214
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):127, 35

               
               
               Conread position:783-1089
               
               
               Cow position:chrX:34094399-34094706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chrX:34221473-34221758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:214
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):42, 87

               
               
               Conread position:783-1089
               
               
               Cow position:chrX:36194789-36195096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chrX:37080821-37080515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 289

               
               
               Conread position:783-1089
               
               
               Cow position:chrX:37487640-37487951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):173, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chrX:37851831-37852138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chrX:38588217-38587914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 124

               
               
               Conread position:783-1089
               
               
               Cow position:chrX:39548096-39548399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 107

               
               
               Conread position:783-1089
               
               
               Cow position:chrX:39560967-39560659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):213, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chrX:39564592-39564287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 177

               
               
               Conread position:783-1089
               
               
               Cow position:chrX:39713244-39713551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chrX:41156005-41156312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:783-1089
               
               
               Cow position:chrX:41880428-41880123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 196

               
               
               Conread position:783-1089
               
               
               Cow position:chrX:42223061-42222769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:222
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):271, 84

               
               
               Conread position:783-1089
               
               
               Cow position:chrX:43437206-43436899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:783-1090
               
               
               Cow position:chrX:23039289-23038983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 18

               
               
               Conread position:783-1106
               
               
               Cow position:chrX:24462745-24462421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 300

               
               
               Conread position:783-1106
               
               
               Cow position:chrX:45112500-45112818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:783-1107
               
               
               Cow position:chrX:40070910-40070585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 118

               
               
               Conread position:783-1108
               
               
               Cow position:chrX:9836605-9836933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 120

               
               
               Conread position:783-1108
               
               
               Cow position:chrX:11976753-11976426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 18

               
               
               Conread position:783-1108
               
               
               Cow position:chrX:17891238-17891565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):233, 41

               
               
               Conread position:783-1108
               
               
               Cow position:chrX:26530666-26530992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):143, 150

               
               
               Conread position:783-1108
               
               
               Cow position:chrX:28557060-28557385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 149

               
               
               Conread position:783-1108
               
               
               Cow position:chrX:30137163-30136847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:229
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):9, 103

               
               
               Conread position:783-1108
               
               
               Cow position:chrX:33829738-33830062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:783-1108
               
               
               Cow position:chrX:43790120-43789800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:210
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):78, 41

               
               
               Conread position:783-1113
               
               
               Cow position:chrX:20652117-20652440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:230
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):271, 35

               
               
               Conread position:783-1118
               
               
               Cow position:chrX:22818768-22819107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 55

               
               
               Conread position:783-1118
               
               
               Cow position:chrX:30316861-30317196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):117, 134

               
               
               Conread position:783-1125
               
               
               Cow position:chrX:15122468-15122126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 150

               
               
               Conread position:784-925
               
               
               Cow position:chrX:13179152-13179011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:784-1056
               
               
               Cow position:chrX:4995348-4995614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):229, 185

               
               
               Conread position:784-1076
               
               
               Cow position:chrX:21591987-21592280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):270, 0

               
               
               Conread position:784-1083
               
               
               Cow position:chrX:33537294-33537578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):270, 44

               
               
               Conread position:784-1089
               
               
               Cow position:chrX:11951076-11950770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):141, 148

               
               
               Conread position:784-1089
               
               
               Cow position:chrX:16045666-16045973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):232, 0

               
               
               Conread position:784-1089
               
               
               Cow position:chrX:23134291-23134591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:784-1089
               
               
               Cow position:chrX:30059590-30059887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:215
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):273, 218

               
               
               Conread position:784-1089
               
               
               Cow position:chrX:34034069-34034366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:203
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):178, 196

               
               
               Conread position:784-1089
               
               
               Cow position:chrX:39697462-39697766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 281

               
               
               Conread position:784-1089
               
               
               Cow position:chrX:41528117-41527800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 143

               
               
               Conread position:785-935
               
               
               Cow position:chrX:5281089-5280939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:785-968
               
               
               Cow position:chrX:30167385-30167202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:785-1076
               
               
               Cow position:chrX:22810591-22810884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):272, 134

               
               
               Conread position:785-1077
               
               
               Cow position:chrX:20800484-20800777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):269, 0

               
               
               Conread position:785-1083
               
               
               Cow position:chrX:5248087-5248385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):294, 112

               
               
               Conread position:785-1089
               
               
               Cow position:chrX:5070867-5070571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):137, 69

               
               
               Conread position:785-1089
               
               
               Cow position:chrX:11146640-11146334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:785-1089
               
               
               Cow position:chrX:13070040-13069736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:208
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):36, 62

               
               
               Conread position:785-1089
               
               
               Cow position:chrX:13090601-13090297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:208
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):36, 62

               
               
               Conread position:785-1089
               
               
               Cow position:chrX:18657110-18656805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):269, 0

               
               
               Conread position:785-1089
               
               
               Cow position:chrX:20357304-20356999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):269, 0

               
               
               Conread position:785-1089
               
               
               Cow position:chrX:21343091-21343395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):273, 192

               
               
               Conread position:785-1089
               
               
               Cow position:chrX:21793286-21793590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):269, 100

               
               
               Conread position:785-1089
               
               
               Cow position:chrX:24109900-24109604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):268, 115

               
               
               Conread position:785-1089
               
               
               Cow position:chrX:29916650-29916346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):272, 72

               
               
               Conread position:785-1089
               
               
               Cow position:chrX:30164535-30164236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):272, 140

               
               
               Conread position:785-1089
               
               
               Cow position:chrX:30181229-30180924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):268, 0

               
               
               Conread position:785-1093
               
               
               Cow position:chrX:28753641-28753333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):273, 305

               
               
               Conread position:785-1108
               
               
               Cow position:chrX:6236148-6235829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):269, 23

               
               
               Conread position:785-1108
               
               
               Cow position:chrX:8640483-8640807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):269, 0

               
               
               Conread position:785-1108
               
               
               Cow position:chrX:24292971-24292644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):136, 147

               
               
               Conread position:786-938
               
               
               Cow position:chrX:17664500-17664348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:786-968
               
               
               Cow position:chrX:22331080-22330899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:786-1069
               
               
               Cow position:chrX:16301393-16301114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:786-1089
               
               
               Cow position:chrX:23279723-23280027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:786-1089
               
               
               Cow position:chrX:23395303-23395607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:786-1089
               
               
               Cow position:chrX:31495434-31495737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):268, 55

               
               
               Conread position:786-1089
               
               
               Cow position:chrX:36536033-36535729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):268, 0

               
               
               Conread position:786-1089
               
               
               Cow position:chrX:41885481-41885177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):268, 0

               
               
               Conread position:787-940
               
               
               Cow position:chrX:27339613-27339460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):134, 119

               
               
               Conread position:787-1076
               
               
               Cow position:chrX:3406639-3406341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):52, 183

               
               
               Conread position:787-1089
               
               
               Cow position:chrX:4767400-4767696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:211
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:787-1089
               
               
               Cow position:chrX:31728164-31728467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 158

               
               
               Conread position:789-1034
               
               
               Cow position:chrX:15176437-15176193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:789-1069
               
               
               Cow position:chrX:16067676-16067394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:183
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):161, 0

               
               
               Conread position:790-1089
               
               
               Cow position:chrX:2184940-2185226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:204
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):254, 66

               
               
               Conread position:791-1077
               
               
               Cow position:chrX:37904748-37905030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:190
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):159, 14

               
               
               Conread position:792-1059
               
               
               Cow position:chrX:30135610-30135342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):243, 8

               
               
               Conread position:792-1089
               
               
               Cow position:chrX:12185802-12186099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):265, 8

               
               
               Conread position:793-1091
               
               
               Cow position:chrX:31934327-31934031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):17, 23

               
               
               Conread position:793-1095
               
               
               Cow position:chrX:29880574-29880273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):133, 7

               
               
               Conread position:796-1075
               
               
               Cow position:chrX:39387764-39387482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):70, 245

               
               
               Conread position:796-1083
               
               
               Cow position:chrX:25449192-25449482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:199
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):177, 18

               
               
               Conread position:796-1084
               
               
               Cow position:chrX:21646573-21646284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):257, 0

               
               
               Conread position:796-1089
               
               
               Cow position:chrX:7276670-7276961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:179
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):258, 175

               
               
               Conread position:796-1108
               
               
               Cow position:chrX:12997209-12996891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:797-1089
               
               
               Cow position:chrX:28132812-28133100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:209
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):253, 33

               
               
               Conread position:797-1118
               
               
               Cow position:chrX:5365883-5365568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:222
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):258, 22

               
               
               Conread position:799-1068
               
               
               Cow position:chrX:37753135-37753402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):126, 105

               
               
               Conread position:800-1077
               
               
               Cow position:chrX:13415720-13415454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):254, 103

               
               
               Conread position:802-958
               
               
               Cow position:chrX:21500406-21500564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:121
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):16, 107

               
               
               Conread position:802-989
               
               
               Cow position:chrX:6671668-6671851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:802-1000
               
               
               Cow position:chrX:27000672-27000862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:802-1047
               
               
               Cow position:chrX:47359096-47358858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):170, 26

               
               
               Conread position:802-1076
               
               
               Cow position:chrX:20741570-20741840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 91

               
               
               Conread position:802-1083
               
               
               Cow position:chrX:25818107-25817822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:802-1084
               
               
               Cow position:chrX:22612122-22612398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 40

               
               
               Conread position:802-1084
               
               
               Cow position:chrX:27497544-27497826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):252, 182

               
               
               Conread position:802-1087
               
               
               Cow position:chrX:16781996-16782280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 209

               
               
               Conread position:802-1087
               
               
               Cow position:chrX:34008494-34008773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:208
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):16, 93

               
               
               Conread position:802-1089
               
               
               Cow position:chrX:5375564-5375277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 108

               
               
               Conread position:802-1089
               
               
               Cow position:chrX:18463063-18463351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):252, 0

               
               
               Conread position:802-1089
               
               
               Cow position:chrX:27615525-27615814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):230, 0

               
               
               Conread position:802-1089
               
               
               Cow position:chrX:30090325-30090042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):252, 45

               
               
               Conread position:802-1089
               
               
               Cow position:chrX:30229399-30229112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):255, 166

               
               
               Conread position:802-1089
               
               
               Cow position:chrX:38231555-38231267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):252, 0

               
               
               Conread position:802-1118
               
               
               Cow position:chrX:12464722-12465038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):255, 10

               
               
               Conread position:802-1118
               
               
               Cow position:chrX:29287708-29288027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:802-1124
               
               
               Cow position:chrX:35384123-35383810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:212
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):267, 68

               
               
               Conread position:803-1014
               
               
               Cow position:chrX:22119291-22119081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:163
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):58, 81

               
               
               Conread position:803-1059
               
               
               Cow position:chrX:6247503-6247247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 35

               
               
               Conread position:803-1089
               
               
               Cow position:chrX:23387822-23387533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):149, 0

               
               
               Conread position:803-1089
               
               
               Cow position:chrX:30165947-30165662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):250, 0

               
               
               Conread position:805-984
               
               
               Cow position:chrX:26877906-26878084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):152, 9

               
               
               Conread position:805-1003
               
               
               Cow position:chrX:19541631-19541433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):113, 127

               
               
               Conread position:805-1069
               
               
               Cow position:chrX:13654208-13654474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):125, 88

               
               
               Conread position:805-1089
               
               
               Cow position:chrX:13801003-13800713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:197
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):184, 119

               
               
               Conread position:805-1089
               
               
               Cow position:chrX:17610737-17610455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):151, 266

               
               
               Conread position:805-1089
               
               
               Cow position:chrX:37795742-37795453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:186
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):124, 158

               
               
               Conread position:805-1107
               
               
               Cow position:chrX:16858958-16858653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):175, 126

               
               
               Conread position:805-1119
               
               
               Cow position:chrX:39745972-39746281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:208
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):229, 9

               
               
               Conread position:806-1089
               
               
               Cow position:chrX:43074603-43074883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):241, 72

               
               
               Conread position:807-1031
               
               
               Cow position:chrX:10410350-10410129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:151
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:807-1069
               
               
               Cow position:chrX:36546079-36545820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:176
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):208, 148

               
               
               Conread position:809-1089
               
               
               Cow position:chrX:26274858-26275139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):245, 0

               
               
               Conread position:812-1089
               
               
               Cow position:chrX:8400825-8400549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:192
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):10, 249

               
               
               Conread position:813-1084
               
               
               Cow position:chrX:30086554-30086284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:187
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):236, 64

               
               
               Conread position:813-1089
               
               
               Cow position:chrX:4413602-4413878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):77, 55

               
               
               Conread position:813-1089
               
               
               Cow position:chrX:23217801-23218079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):104, 155

               
               
               Conread position:813-1089
               
               
               Cow position:chrX:41906008-41905730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):241, 12

               
               
               Conread position:813-1113
               
               
               Cow position:chrX:3650104-3649803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:218
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):71, 250

               
               
               Conread position:814-1068
               
               
               Cow position:chrX:45042355-45042107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):240, 57

               
               
               Conread position:814-1070
               
               
               Cow position:chrX:23327079-23326823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:191
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):219, 229

               
               
               Conread position:814-1082
               
               
               Cow position:chrX:9535262-9535536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:198
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):138, 0

               
               
               Conread position:814-1089
               
               
               Cow position:chrX:302843-303117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):223, 86

               
               
               Conread position:814-1089
               
               
               Cow position:chrX:24446678-24446954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):239, 0

               
               
               Conread position:814-1123
               
               
               Cow position:chrX:15590702-15590395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):106, 27

               
               
               Conread position:817-1084
               
               
               Cow position:chrX:20952840-20953104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:184
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):237, 72

               
               
               Conread position:817-1089
               
               
               Cow position:chrX:39765290-39765558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):237, 66

               
               
               Conread position:818-1004
               
               
               Cow position:chrX:10300399-10300205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):144, 0

               
               
               Conread position:818-1066
               
               
               Cow position:chrX:19396960-19397210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):142, 0

               
               
               Conread position:818-1089
               
               
               Cow position:chrX:18193418-18193690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):239, 0

               
               
               Conread position:819-1089
               
               
               Cow position:chrX:15349484-15349213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):235, 0

               
               
               Conread position:820-1065
               
               
               Cow position:chrX:31964660-31964913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):86, 242

               
               
               Conread position:820-1077
               
               
               Cow position:chrX:31261883-31261645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:183
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:820-1089
               
               
               Cow position:chrX:4558055-4558320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 184

               
               
               Conread position:820-1129
               
               
               Cow position:chrX:33997267-33997578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):215, 36

               
               
               Conread position:821-1076
               
               
               Cow position:chrX:164638-164893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):172, 244

               
               
               Conread position:821-1084
               
               
               Cow position:chrX:38152989-38152725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:175
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):233, 0

               
               
               Conread position:821-1089
               
               
               Cow position:chrX:5640151-5639882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):232, 0

               
               
               Conread position:822-1080
               
               
               Cow position:chrX:24201783-24202041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:181
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):39, 86

               
               
               Conread position:824-1069
               
               
               Cow position:chrX:35938325-35938085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):230, 33

               
               
               Conread position:824-1089
               
               
               Cow position:chrX:18488979-18488714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):230, 61

               
               
               Conread position:824-1108
               
               
               Cow position:chrX:37839882-37840167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 60

               
               
               Conread position:825-1084
               
               
               Cow position:chrX:21658284-21658544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:168
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):135, 148

               
               
               Conread position:825-1089
               
               
               Cow position:chrX:15574953-15574690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:173
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):208, 198

               
               
               Conread position:825-1089
               
               
               Cow position:chrX:25321510-25321248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):102, 63

               
               
               Conread position:826-1084
               
               
               Cow position:chrX:21661754-21662020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):193, 92

               
               
               Conread position:826-1089
               
               
               Cow position:chrX:5647368-5647104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):228, 0

               
               
               Conread position:826-1089
               
               
               Cow position:chrX:23985986-23986250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):162, 204

               
               
               Conread position:827-1131
               
               
               Cow position:chrX:24889374-24889074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):226, 142

               
               
               Conread position:832-1087
               
               
               Cow position:chrX:26341459-26341213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:176
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):84, 75

               
               
               Conread position:832-1089
               
               
               Cow position:chrX:20999530-20999267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:834-1089
               
               
               Cow position:chrX:35287170-35287425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:183
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):220, 54

               
               
               Conread position:835-1056
               
               
               Cow position:chrX:13322177-13322402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):185, 0

               
               
               Conread position:835-1084
               
               
               Cow position:chrX:502942-502692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:176
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):86, 75

               
               
               Conread position:835-1089
               
               
               Cow position:chrX:9642683-9642432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):219, 140

               
               
               Conread position:835-1089
               
               
               Cow position:chrX:21414612-21414867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:184
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):145, 138

               
               
               Conread position:835-1089
               
               
               Cow position:chrX:25282749-25282493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:187
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):86, 71

               
               
               Conread position:836-1089
               
               
               Cow position:chrX:34760812-34761066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:189
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):218, 0

               
               
               Conread position:838-1067
               
               
               Cow position:chrX:39410933-39410706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:155
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):123, 62

               
               
               Conread position:838-1089
               
               
               Cow position:chrX:6279852-6279605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:187
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):20, 37

               
               
               Conread position:838-1089
               
               
               Cow position:chrX:6656269-6656018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:182
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):216, 158

               
               
               Conread position:838-1089
               
               
               Cow position:chrX:16525540-16525790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:180
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):210, 10

               
               
               Conread position:839-1089
               
               
               Cow position:chrX:864857-865108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:190
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):218, 0

               
               
               Conread position:839-1089
               
               
               Cow position:chrX:18247107-18247357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:171
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):166, 18

               
               
               Conread position:839-1089
               
               
               Cow position:chrX:22616622-22616371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):215, 0

               
               
               Conread position:839-1109
               
               
               Cow position:chrX:21818699-21818435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:182
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):215, 48

               
               
               Conread position:840-1108
               
               
               Cow position:chrX:44193685-44193417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):215, 15

               
               
               Conread position:841-1077
               
               
               Cow position:chrX:21685361-21685607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):69, 198

               
               
               Conread position:841-1090
               
               
               Cow position:chrX:14802068-14801817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:190
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:844-1075
               
               
               Cow position:chrX:25847578-25847808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:168
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):210, 13

               
               
               Conread position:844-1083
               
               
               Cow position:chrX:13912188-13911948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):210, 0

               
               
               Conread position:844-1089
               
               
               Cow position:chrX:10413216-10412975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:186
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):162, 80

               
               
               Conread position:846-1077
               
               
               Cow position:chrX:20953293-20953521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):127, 0

               
               
               Conread position:846-1107
               
               
               Cow position:chrX:42042589-42042327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):192, 185

               
               
               Conread position:847-1089
               
               
               Cow position:chrX:6371937-6372180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:187
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):207, 0

               
               
               Conread position:847-1089
               
               
               Cow position:chrX:16085901-16085658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:187
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):207, 0

               
               
               Conread position:848-1089
               
               
               Cow position:chrX:27758467-27758709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:184
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):206, 0

               
               
               Conread position:854-1084
               
               
               Cow position:chrX:15151903-15151669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):58, 80

               
               
               Conread position:854-1084
               
               
               Cow position:chrX:17228739-17228968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:173
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):225, 164

               
               
               Conread position:854-1108
               
               
               Cow position:chrX:29849853-29849604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:184
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):243, 200

               
               
               Conread position:857-1076
               
               
               Cow position:chrX:36691615-36691833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):196, 74

               
               
               Conread position:857-1089
               
               
               Cow position:chrX:20020339-20020581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:182
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):149, 0

               
               
               Conread position:857-1089
               
               
               Cow position:chrX:22869586-22869819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):200, 0

               
               
               Conread position:857-1108
               
               
               Cow position:chrX:28633687-28633435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:173
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):197, 0

               
               
               Conread position:860-1089
               
               
               Cow position:chrX:30172936-30172706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 184

               
               
               Conread position:860-1120
               
               
               Cow position:chrX:9228131-9227870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):194, 85

               
               
               Conread position:862-1108
               
               
               Cow position:chrX:38228538-38228298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):108, 100

               
               
               Conread position:862-1120
               
               
               Cow position:chrX:23523021-23522769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:172
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):168, 42

               
               
               Conread position:863-1089
               
               
               Cow position:chrX:23236816-23237044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:157
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):153, 142

               
               
               Conread position:868-1084
               
               
               Cow position:chrX:40496798-40496582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):186, 59

               
               
               Conread position:871-1089
               
               
               Cow position:chrX:9899555-9899336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):186, 0

               
               
               Conread position:873-1089
               
               
               Cow position:chrX:13056809-13057032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):48, 38

               
               
               Conread position:874-1089
               
               
               Cow position:chrX:17067322-17067111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):180, 144

               
               
               Conread position:875-1089
               
               
               Cow position:chrX:31378726-31378941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):155, 180

               
               
               Conread position:877-1090
               
               
               Cow position:chrX:38998634-38998842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:156
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):177, 52

               
               
               Conread position:880-1089
               
               
               Cow position:chrX:8104716-8104506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:154
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):174, 0

               
               
               Conread position:882-1112
               
               
               Cow position:chrX:11991351-11991128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:173
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):167, 77

               
               
               Conread position:883-1064
               
               
               Cow position:chrX:900834-900654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):171, 85

               
               
               Conread position:883-1090
               
               
               Cow position:chrX:4406679-4406884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:163
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:885-1075
               
               
               Cow position:chrX:6453493-6453683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):169, 152

               
               
               Conread position:886-1050
               
               
               Cow position:chrX:32585273-32585111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):132, 0

               
               
               Conread position:887-1108
               
               
               Cow position:chrX:14050396-14050174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:165
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):167, 0

               
               
               Conread position:887-1108
               
               
               Cow position:chrX:22809062-22809284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):167, 0

               
               
               Conread position:888-1089
               
               
               Cow position:chrX:42732670-42732872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:149
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):170, 0

               
               
               Conread position:889-1032
               
               
               Cow position:chrX:36839496-36839636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:113
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):79, 38

               
               
               Conread position:890-1033
               
               
               Cow position:chrX:42009394-42009537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:894-1075
               
               
               Cow position:chrX:6870758-6870577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):68, 76

               
               
               Conread position:894-1084
               
               
               Cow position:chrX:45401198-45401006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:894-1089
               
               
               Cow position:chrX:6201337-6201533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):160, 0

               
               
               Conread position:894-1108
               
               
               Cow position:chrX:34442624-34442409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):164, 0

               
               
               Conread position:896-1089
               
               
               Cow position:chrX:27028937-27029131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):158, 0

               
               
               Conread position:903-1089
               
               
               Cow position:chrX:16087310-16087123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):151, 0

               
               
               Conread position:914-1084
               
               
               Cow position:chrX:21254043-21254214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):140, 0

               
               
               Conread position:914-1089
               
               
               Cow position:chrX:1617405-1617233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):140, 90

               
               
               Conread position:914-1089
               
               
               Cow position:chrX:16325701-16325530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):7, 16

               
               
               Conread position:919-1089
               
               
               Cow position:chrX:15140701-15140531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):135, 154

               
               
               Conread position:919-1089
               
               
               Cow position:chrX:37815008-37815180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):139, 0

               
               
               Conread position:920-1089
               
               
               Cow position:chrX:13178776-13178607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:135
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):138, 161

               
               
               Conread position:921-1083
               
               
               Cow position:chrX:17890020-17889858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:922-1089
               
               
               Cow position:chrX:20503475-20503643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:131
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):132, 0

               
               
               Conread position:924-1075
               
               
               Cow position:chrX:17791719-17791567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):130, 0

               
               
               Conread position:926-1089
               
               
               Cow position:chrX:6854877-6854713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):127, 0

               
               
               Conread position:927-1108
               
               
               Cow position:chrX:45374262-45374088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):127, 63

               
               
               Conread position:928-1089
               
               
               Cow position:chrX:2103243-2103405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:128
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:928-1089
               
               
               Cow position:chrX:10445575-10445415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):126, 95

               
               
               Conread position:928-1089
               
               
               Cow position:chrX:37186720-37186882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:131
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:928-1108
               
               
               Cow position:chrX:23452609-23452428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):129, 0

               
               
               Conread position:928-1118
               
               
               Cow position:chrX:16465145-16465337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):126, 164

               
               
               Conread position:929-1083
               
               
               Cow position:chrX:29779875-29779720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:116
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):128, 0

               
               
               Conread position:930-1077
               
               
               Cow position:chrX:721699-721847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:119
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:932-1069
               
               
               Cow position:chrX:3804970-3804832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:111
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:933-1083
               
               
               Cow position:chrX:4751479-4751336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):121, 35

               
               
               Conread position:934-1108
               
               
               Cow position:chrX:7177560-7177734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:129
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):108, 28

               
               
               Conread position:936-1089
               
               
               Cow position:chrX:36729230-36729384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:125
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:942-1089
               
               
               Cow position:chrX:29482885-29482736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:114
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:943-1089
               
               
               Cow position:chrX:30455763-30455616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:944-1084
               
               
               Cow position:chrX:19109960-19110098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:107
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:946-1089
               
               
               Cow position:chrX:32643342-32643486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:947-1089
               
               
               Cow position:chrX:11499917-11499774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:948-1089
               
               
               Cow position:chrX:25289821-25289679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:948-1089
               
               
               Cow position:chrX:25292221-25292079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:948-1089
               
               
               Cow position:chrX:29930534-29930392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:968-1089
               
               
               Cow position:chrX:18243871-18243993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:97
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:970-1089
               
               
               Cow position:chrX:5334933-5334813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:96
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:972-1089
               
               
               Cow position:chrX:8590462-8590580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:93
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:974-1089
               
               
               Cow position:chrX:38852047-38852163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:94
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):80, 0