Cow genome map
| Conread name: | Ss1.1-rssp24_n22.5 |
| Conread position: | 14-264 |
| Cow position: | chr10:51215293-51215552 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 97, 151 |
| Conread position: | 20-597 |
| Cow position: | chr10:47936057-47936654 (view UCSC Genome Browser custom track) |
| Alignm length: | 606 |
| Alignm identity: | 372 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 67, 85 |
| Conread position: | 7-552 |
| Cow position: | chr11:35228457-35227893 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 373 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 50, 75 |
| Conread position: | 22-271 |
| Cow position: | chr11:35256999-35256746 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 30, 45 |
| Conread position: | 13-285 |
| Cow position: | chr14:40772969-40773248 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 33, 102 |
| Conread position: | 14-287 |
| Cow position: | chr14:3087737-3087464 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 98, 111 |
| Conread position: | 3-271 |
| Cow position: | chr16:26517842-26517568 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 184 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 83, 178 |
| Conread position: | 3-271 |
| Cow position: | chr17:4163535-4163264 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 183 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 123, 185 |
| Conread position: | 3-271 |
| Cow position: | chr17:18849440-18849722 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 4-271 |
| Cow position: | chr18:20832794-20833069 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 178 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 111, 0 |
| Conread position: | 9-263 |
| Cow position: | chr18:35299472-35299729 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 180 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 69, 5 |
| Conread position: | 13-271 |
| Cow position: | chr18:5678296-5678565 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 183 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 27, 56 |
| Conread position: | 3-286 |
| Cow position: | chr19:32785657-32785363 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 210 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 101, 162 |
| Conread position: | 13-241 |
| Cow position: | chr19:9117582-9117347 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 165 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 31, 78 |
| Conread position: | 3-720 |
| Cow position: | chr2:5890662-5889938 (view UCSC Genome Browser custom track) |
| Alignm length: | 750 |
| Alignm identity: | 571 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 80 |
| Conread position: | 13-287 |
| Cow position: | chr2:39970872-39971145 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 196 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 114, 84 |
| Conread position: | 3-224 |
| Cow position: | chr20:14012381-14012614 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 4-292 |
| Cow position: | chr22:46426991-46426693 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 39, 26 |
| Conread position: | 13-434 |
| Cow position: | chr22:33480559-33480127 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 281 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 45, 19 |
| Conread position: | 13-271 |
| Cow position: | chr23:14921135-14920871 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 177 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 113, 61 |
| Conread position: | 15-286 |
| Cow position: | chr24:39030344-39030074 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 185 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 130, 27 |
| Conread position: | 15-517 |
| Cow position: | chr24:4464301-4463775 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 341 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 96, 67 |
| Conread position: | 3-271 |
| Cow position: | chr25:4761096-4760817 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 188 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 35, 26 |
| Conread position: | 4-271 |
| Cow position: | chr25:536895-536624 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 8, 63 |
| Conread position: | 13-260 |
| Cow position: | chr25:17877851-17877597 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 170 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 114, 198 |
| Conread position: | 20-525 |
| Cow position: | chr25:18329175-18328671 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 334 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 107, 83 |
| Conread position: | 146-298 |
| Cow position: | chr26:7575461-7575307 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 90, 9 |
| Conread position: | 147-713 |
| Cow position: | chr26:23043214-23043799 (view UCSC Genome Browser custom track) |
| Alignm length: | 598 |
| Alignm identity: | 378 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 90, 139 |
| Conread position: | 13-287 |
| Cow position: | chr27:18560252-18560540 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 92, 213 |
| Conread position: | 3-287 |
| Cow position: | chr28:30438932-30439227 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 197 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 123, 102 |
| Conread position: | 3-391 |
| Cow position: | chr28:27937547-27937156 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 255 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 36, 251 |
| Conread position: | 36-257 |
| Cow position: | chr28:17195437-17195209 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 66, 177 |
| Conread position: | 5-271 |
| Cow position: | chr29:22966386-22966110 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 97, 67 |
| Conread position: | 18-232 |
| Cow position: | chr29:39313708-39313483 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 157 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 87, 146 |
| Conread position: | 20-720 |
| Cow position: | chr3:41300931-41301673 (view UCSC Genome Browser custom track) |
| Alignm length: | 752 |
| Alignm identity: | 461 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 106, 161 |
| Conread position: | 3-241 |
| Cow position: | chr4:40405993-40405756 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 128, 78 |
| Conread position: | 3-287 |
| Cow position: | chr4:46029832-46030125 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 69, 10 |
| Conread position: | 3-587 |
| Cow position: | chr5:63480184-63479596 (view UCSC Genome Browser custom track) |
| Alignm length: | 609 |
| Alignm identity: | 377 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 35, 100 |
| Conread position: | 9-420 |
| Cow position: | chr5:70601895-70602315 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 280 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 117, 7 |
| Conread position: | 15-665 |
| Cow position: | chr5:36717745-36717046 (view UCSC Genome Browser custom track) |
| Alignm length: | 706 |
| Alignm identity: | 442 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 89, 268 |
| Conread position: | 42-271 |
| Cow position: | chr5:51861358-51861127 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 162 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 85, 60 |
| Conread position: | 3-271 |
| Cow position: | chr8:41016081-41015822 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 128, 98 |
| Conread position: | 5-292 |
| Cow position: | chr8:31215201-31214909 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 189 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 121, 11 |
| Conread position: | 3-286 |
| Cow position: | chr9:4664192-4663900 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 202 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 29, 10 |
| Conread position: | 3-430 |
| Cow position: | chrX:1697200-1696757 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 295 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 123, 37 |
| Conread position: | 3-719 |
| Cow position: | chrX:19942712-19941976 (view UCSC Genome Browser custom track) |
| Alignm length: | 754 |
| Alignm identity: | 476 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 64, 100 |