Cow genome map
| Conread name: | Ss1.1-rssp31_m19.5.117 |
| Conread position: | 2621-2919 |
| Cow position: | chr1:49726851-49727169 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 216 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 2442-2702 |
| Cow position: | chr10:68824221-68823947 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 197 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 22, 81 |
| Conread position: | 1-2923 |
| Cow position: | chr12:33773285-33770324 (view UCSC Genome Browser custom track) |
| Alignm length: | 2972 |
| Alignm identity: | 2542 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 2268 |
| Conread position: | 57-219 |
| Cow position: | chr21:46565508-46565346 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 152 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 225-588 |
| Cow position: | chr21:46565251-46564888 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 585-724 |
| Cow position: | chr21:46564582-46564443 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 126 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 722-1042 |
| Cow position: | chr21:46564159-46563839 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1041-1208 |
| Cow position: | chr21:46563669-46563502 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 151 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1209-1404 |
| Cow position: | chr21:46563325-46563130 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1395-1549 |
| Cow position: | chr21:46563031-46562877 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 147 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1546-1819 |
| Cow position: | chr21:46562718-46562445 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1813-2153 |
| Cow position: | chr21:46562163-46561823 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2150-2916 |
| Cow position: | chr21:46561547-46560743 (view UCSC Genome Browser custom track) |
| Alignm length: | 815 |
| Alignm identity: | 615 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 142, 120 |
| Conread position: | 92-221 |
| Cow position: | chr23:18192309-18192437 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 221-428 |
| Cow position: | chr23:17555303-17555096 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 144, 149 |
| Conread position: | 421-573 |
| Cow position: | chr23:17555007-17554855 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 586-741 |
| Cow position: | chr23:17554702-17554549 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 139, 0 |
| Conread position: | 899-1042 |
| Cow position: | chr23:17554031-17553888 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 122 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1041-1206 |
| Cow position: | chr23:17553539-17553374 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 131 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1211-1399 |
| Cow position: | chr23:17553154-17552966 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1649-1818 |
| Cow position: | chr23:17552576-17552407 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 101 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1815-2152 |
| Cow position: | chr23:17552161-17551824 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1586-1792 |
| Cow position: | chr29:29048662-29048865 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 154 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 164, 88 |
| Conread position: | 2543-2934 |
| Cow position: | chr5:11154578-11154168 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 80 |
| Conread position: | 37-495 |
| Cow position: | chr7:21553801-21554252 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 201, 58 |
| Conread position: | 545-752 |
| Cow position: | chr7:21554270-21554471 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 170 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 1637-1750 |
| Cow position: | chr7:34680058-34680168 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 96 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 1812-1954 |
| Cow position: | chr7:34680533-34680676 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 118 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 133, 0 |
| Conread position: | 1944-2920 |
| Cow position: | chr7:34680875-34681858 (view UCSC Genome Browser custom track) |
| Alignm length: | 1010 |
| Alignm identity: | 733 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 73 |
| Conread position: | 2657-2916 |
| Cow position: | chr8:2308774-2309039 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 60, 90 |
| Conread position: | 92-943 |
| Cow position: | chrX:38214936-38215774 (view UCSC Genome Browser custom track) |
| Alignm length: | 853 |
| Alignm identity: | 613 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 273, 7 |
| Conread position: | 729-2261 |
| Cow position: | chrX:38215614-38217139 (view UCSC Genome Browser custom track) |
| Alignm length: | 1534 |
| Alignm identity: | 1153 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 19 |