Cow genome map
| Conread name: | Ss1.1-rste13_m12.5 |
| Conread position: | 164-434 |
| Cow position: | chr10:16697154-16697416 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 233, 54 |
| Conread position: | 164-441 |
| Cow position: | chr10:16298523-16298795 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 7, 110 |
| Conread position: | 167-329 |
| Cow position: | chr10:45390436-45390596 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 113, 0 |
| Conread position: | 171-353 |
| Cow position: | chr10:46327011-46326829 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 171-360 |
| Cow position: | chr10:64807395-64807206 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 163, 74 |
| Conread position: | 180-330 |
| Cow position: | chr10:65162626-65162474 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 120 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 194-350 |
| Cow position: | chr10:65168285-65168441 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 118 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 112, 83 |
| Conread position: | 307-444 |
| Cow position: | chr10:46326815-46326678 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 104 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 100, 83 |
| Conread position: | 164-324 |
| Cow position: | chr11:19773273-19773434 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 104, 7 |
| Conread position: | 193-397 |
| Cow position: | chr11:13950872-13951081 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 196-353 |
| Cow position: | chr11:12320432-12320274 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 112, 0 |
| Conread position: | 227-341 |
| Cow position: | chr11:1995987-1996102 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 96 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 81, 35 |
| Conread position: | 153-444 |
| Cow position: | chr13:33231493-33231201 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 55 |
| Conread position: | 194-353 |
| Cow position: | chr13:236512-236354 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 117 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 114, 136 |
| Conread position: | 167-333 |
| Cow position: | chr15:13548482-13548322 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 133 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 194-329 |
| Cow position: | chr15:48415815-48415682 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 114, 57 |
| Conread position: | 194-359 |
| Cow position: | chr17:19971274-19971442 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 122 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 114, 0 |
| Conread position: | 194-346 |
| Cow position: | chr20:6000270-6000421 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 118 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 114, 10 |
| Conread position: | 161-330 |
| Cow position: | chr21:14790807-14790638 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 147, 110 |
| Conread position: | 171-336 |
| Cow position: | chr23:18407662-18407496 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 139, 0 |
| Conread position: | 164-325 |
| Cow position: | chr24:5903758-5903595 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 80, 26 |
| Conread position: | 194-358 |
| Cow position: | chr24:39733737-39733575 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 70, 148 |
| Conread position: | 195-332 |
| Cow position: | chr28:6560776-6560914 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 105 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 109, 0 |
| Conread position: | 153-283 |
| Cow position: | chr29:11485687-11485818 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 99 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 127, 0 |
| Conread position: | 307-444 |
| Cow position: | chr29:11485919-11486060 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 48, 83 |
| Conread position: | 153-444 |
| Cow position: | chr6:11203124-11203410 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 132 |
| Conread position: | 167-330 |
| Cow position: | chr6:35394500-35394337 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 173-440 |
| Cow position: | chr6:42108618-42108347 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 194 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 156, 124 |
| Conread position: | 180-444 |
| Cow position: | chr6:35214237-35214482 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 197 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 194-329 |
| Cow position: | chr6:16483175-16483311 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 154-331 |
| Cow position: | chr7:28660479-28660303 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 135 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 92, 36 |
| Conread position: | 194-359 |
| Cow position: | chr7:948966-948799 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 114, 131 |
| Conread position: | 172-350 |
| Cow position: | chr8:30538535-30538710 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 198-353 |
| Cow position: | chr8:26714752-26714913 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 109, 0 |
| Conread position: | 194-355 |
| Cow position: | chr9:39183767-39183606 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 133 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 113, 10 |
| Conread position: | 195-353 |
| Cow position: | chr9:20836617-20836460 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 113, 94 |
| Conread position: | 164-325 |
| Cow position: | chrX:21799290-21799452 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 80, 26 |
| Conread position: | 173-443 |
| Cow position: | chrX:41922000-41922270 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 115 |
| Conread position: | 194-359 |
| Cow position: | chrX:29370768-29370601 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 114, 68 |