Cow genome map
| Conread name: | Ss1.1-rste33_n14.5 |
| Conread position: | 482-611 |
| Cow position: | chr1:50992051-50992180 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 102 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 35, 17 |
| Conread position: | 489-623 |
| Cow position: | chr1:98605609-98605472 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 104 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 30-123 |
| Cow position: | chr10:10907049-10907142 (view UCSC Genome Browser custom track) |
| Alignm length: | 94 |
| Alignm identity: | 94 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 171-265 |
| Cow position: | chr10:10916003-10916097 (view UCSC Genome Browser custom track) |
| Alignm length: | 96 |
| Alignm identity: | 84 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 92, 77 |
| Conread position: | 245-492 |
| Cow position: | chr10:10917368-10917615 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 146 |
| Conread position: | 447-606 |
| Cow position: | chr10:48130037-48130200 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 123 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 17, 25 |
| Conread position: | 450-627 |
| Cow position: | chr11:43737065-43736894 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 475-595 |
| Cow position: | chr12:33319602-33319479 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 101 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 18, 26 |
| Conread position: | 484-606 |
| Cow position: | chr12:11090495-11090615 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 96 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 484-620 |
| Cow position: | chr12:15089560-15089701 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 107 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 440-606 |
| Cow position: | chr13:18112548-18112380 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 32, 47 |
| Conread position: | 471-616 |
| Cow position: | chr13:23823117-23823263 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 478-615 |
| Cow position: | chr13:14063616-14063754 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 105 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 18, 36 |
| Conread position: | 484-625 |
| Cow position: | chr13:27173945-27174088 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 108 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 33, 23 |
| Conread position: | 465-608 |
| Cow position: | chr14:8750022-8749879 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 117 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 21, 10 |
| Conread position: | 460-616 |
| Cow position: | chr16:7727978-7727820 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 459-620 |
| Cow position: | chr17:41912714-41912879 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 33, 28 |
| Conread position: | 460-595 |
| Cow position: | chr17:21466153-21466019 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 101 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 460-618 |
| Cow position: | chr17:40793362-40793527 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 123 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 31, 12 |
| Conread position: | 465-606 |
| Cow position: | chr17:15340612-15340474 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 52, 21 |
| Conread position: | 460-595 |
| Cow position: | chr18:49126544-49126409 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 13, 40 |
| Conread position: | 471-606 |
| Cow position: | chr18:17390947-17390813 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 122, 46 |
| Conread position: | 481-599 |
| Cow position: | chr18:40356893-40356774 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 100 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 26, 15 |
| Conread position: | 455-602 |
| Cow position: | chr19:6406490-6406344 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 114 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 135, 15 |
| Conread position: | 459-606 |
| Cow position: | chr19:20670680-20670535 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 113 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 27, 23 |
| Conread position: | 464-626 |
| Cow position: | chr19:22438744-22438903 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 122 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 11, 48 |
| Conread position: | 476-610 |
| Cow position: | chr19:14613140-14613273 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 101 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 497-614 |
| Cow position: | chr19:19549468-19549349 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 95 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 502-606 |
| Cow position: | chr19:34420502-34420609 (view UCSC Genome Browser custom track) |
| Alignm length: | 108 |
| Alignm identity: | 89 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 471-634 |
| Cow position: | chr2:18997790-18997955 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 118 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 477-614 |
| Cow position: | chr2:81758165-81758303 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 107 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 31, 23 |
| Conread position: | 463-599 |
| Cow position: | chr20:33438842-33438711 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 468-606 |
| Cow position: | chr20:10788801-10788661 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 111 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 28, 18 |
| Conread position: | 516-622 |
| Cow position: | chr20:4891956-4891850 (view UCSC Genome Browser custom track) |
| Alignm length: | 107 |
| Alignm identity: | 85 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 476-623 |
| Cow position: | chr22:6721009-6720857 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 113 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 478-606 |
| Cow position: | chr22:6709714-6709584 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 101 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 460-626 |
| Cow position: | chr24:24091295-24091130 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 124 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 39, 48 |
| Conread position: | 499-646 |
| Cow position: | chr24:39791639-39791788 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 8, 93 |
| Conread position: | 459-616 |
| Cow position: | chr25:36017634-36017793 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 23, 16 |
| Conread position: | 470-626 |
| Cow position: | chr25:8223021-8223180 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 124 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 5, 32 |
| Conread position: | 476-622 |
| Cow position: | chr25:14659047-14658901 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 109 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 117, 42 |
| Conread position: | 485-615 |
| Cow position: | chr25:7012813-7012943 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 100 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 32, 22 |
| Conread position: | 460-606 |
| Cow position: | chr26:34154255-34154397 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 15, 23 |
| Conread position: | 474-624 |
| Cow position: | chr26:32863529-32863376 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 114 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 8, 47 |
| Conread position: | 475-607 |
| Cow position: | chr26:16783917-16784051 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 102 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 466-615 |
| Cow position: | chr27:9253220-9253377 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 117 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 471-621 |
| Cow position: | chr27:815221-815065 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 115 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 460-627 |
| Cow position: | chr28:3397067-3396900 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 124 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 30, 20 |
| Conread position: | 464-613 |
| Cow position: | chr28:4375555-4375407 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 47, 125 |
| Conread position: | 486-619 |
| Cow position: | chr29:29176275-29176144 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 31, 13 |
| Conread position: | 447-606 |
| Cow position: | chr3:49231905-49232069 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 28, 12 |
| Conread position: | 460-614 |
| Cow position: | chr3:4319754-4319912 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 117 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 12, 41 |
| Conread position: | 463-616 |
| Cow position: | chr3:84250781-84250629 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 54, 36 |
| Conread position: | 474-606 |
| Cow position: | chr3:27670527-27670658 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 103 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 43, 8 |
| Conread position: | 475-602 |
| Cow position: | chr3:15160570-15160698 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 100 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 465-613 |
| Cow position: | chr4:19324080-19324227 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 10, 35 |
| Conread position: | 475-616 |
| Cow position: | chr4:52268224-52268084 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 7, 27 |
| Conread position: | 464-597 |
| Cow position: | chr5:61811309-61811444 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 107 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 11, 23 |
| Conread position: | 482-634 |
| Cow position: | chr5:29831404-29831250 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 129, 25 |
| Conread position: | 460-604 |
| Cow position: | chr6:5609338-5609195 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 68, 38 |
| Conread position: | 463-625 |
| Cow position: | chr6:30974183-30974345 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 44, 12 |
| Conread position: | 470-611 |
| Cow position: | chr6:592469-592325 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 116 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 37, 83 |
| Conread position: | 474-606 |
| Cow position: | chr6:35964370-35964232 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 110 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 8, 29 |
| Conread position: | 458-607 |
| Cow position: | chr7:11944797-11944946 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 113 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 38, 42 |
| Conread position: | 460-618 |
| Cow position: | chr7:30276846-30277001 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 44, 58 |
| Conread position: | 474-615 |
| Cow position: | chr7:52382833-52382697 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 472-620 |
| Cow position: | chr8:43153588-43153437 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 35, 22 |
| Conread position: | 474-614 |
| Cow position: | chr8:19646344-19646482 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 109 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 43, 22 |
| Conread position: | 485-630 |
| Cow position: | chr8:20107696-20107549 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 108 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 491-623 |
| Cow position: | chr8:11927248-11927380 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 109 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 102, 16 |
| Conread position: | 464-601 |
| Cow position: | chr9:50075134-50074993 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 108 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 464-614 |
| Cow position: | chr9:36849593-36849439 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 120 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 28, 18 |
| Conread position: | 482-626 |
| Cow position: | chr9:2037379-2037236 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 108 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 25, 17 |
| Conread position: | 460-610 |
| Cow position: | chrX:1385288-1385437 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 118 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 26, 15 |
| Conread position: | 471-614 |
| Cow position: | chrX:40531926-40531780 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 19, 30 |
| Conread position: | 484-599 |
| Cow position: | chrX:40269622-40269739 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 8, 62 |