Cow genome map
| Conread name: | Ss1.1-rsug11_i19.5.112 |
| Conread position: | 2598-2896 |
| Cow position: | chr1:49726851-49727169 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 218 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 2419-2679 |
| Cow position: | chr10:68824221-68823947 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 197 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 22, 81 |
| Conread position: | 1-2900 |
| Cow position: | chr12:33773262-33770324 (view UCSC Genome Browser custom track) |
| Alignm length: | 2949 |
| Alignm identity: | 2528 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 2245 |
| Conread position: | 34-196 |
| Cow position: | chr21:46565508-46565346 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 152 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 202-565 |
| Cow position: | chr21:46565251-46564888 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 562-701 |
| Cow position: | chr21:46564582-46564443 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 125 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 699-1019 |
| Cow position: | chr21:46564159-46563839 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1018-1185 |
| Cow position: | chr21:46563669-46563502 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 152 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1186-1381 |
| Cow position: | chr21:46563325-46563130 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 181 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1372-1526 |
| Cow position: | chr21:46563031-46562877 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 147 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1523-1796 |
| Cow position: | chr21:46562718-46562445 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1790-2130 |
| Cow position: | chr21:46562163-46561823 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2127-2893 |
| Cow position: | chr21:46561547-46560743 (view UCSC Genome Browser custom track) |
| Alignm length: | 815 |
| Alignm identity: | 617 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 142, 120 |
| Conread position: | 69-198 |
| Cow position: | chr23:18192309-18192437 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 198-405 |
| Cow position: | chr23:17555303-17555096 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 144, 149 |
| Conread position: | 398-550 |
| Cow position: | chr23:17555007-17554855 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 563-718 |
| Cow position: | chr23:17554702-17554549 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 139, 0 |
| Conread position: | 876-1019 |
| Cow position: | chr23:17554031-17553888 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 121 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1018-1183 |
| Cow position: | chr23:17553539-17553374 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 132 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1188-1376 |
| Cow position: | chr23:17553154-17552966 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1626-1795 |
| Cow position: | chr23:17552576-17552407 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 101 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1792-2129 |
| Cow position: | chr23:17552161-17551824 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1563-1769 |
| Cow position: | chr29:29048662-29048865 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 154 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 164, 88 |
| Conread position: | 2520-2911 |
| Cow position: | chr5:11154578-11154168 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 80 |
| Conread position: | 14-472 |
| Cow position: | chr7:21553801-21554252 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 201, 58 |
| Conread position: | 522-729 |
| Cow position: | chr7:21554270-21554471 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 169 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 1614-1727 |
| Cow position: | chr7:34680058-34680168 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 95 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 1789-1931 |
| Cow position: | chr7:34680533-34680676 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 118 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 133, 0 |
| Conread position: | 1921-2897 |
| Cow position: | chr7:34680875-34681858 (view UCSC Genome Browser custom track) |
| Alignm length: | 1011 |
| Alignm identity: | 738 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 73 |
| Conread position: | 2634-2893 |
| Cow position: | chr8:2308774-2309039 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 189 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 60, 90 |
| Conread position: | 69-920 |
| Cow position: | chrX:38214936-38215774 (view UCSC Genome Browser custom track) |
| Alignm length: | 853 |
| Alignm identity: | 613 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 273, 7 |
| Conread position: | 706-2238 |
| Cow position: | chrX:38215614-38217139 (view UCSC Genome Browser custom track) |
| Alignm length: | 1534 |
| Alignm identity: | 1152 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 19 |