Cow genome map
| Conread name: | Ss1.1-rtes01_j19.5 |
| Conread position: | 1487-1642 |
| Cow position: | chr1:40600194-40600025 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 1543-1644 |
| Cow position: | chr1:77232496-77232600 (view UCSC Genome Browser custom track) |
| Alignm length: | 105 |
| Alignm identity: | 88 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 1465-1642 |
| Cow position: | chr10:37668012-37668205 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 1465-1644 |
| Cow position: | chr10:1428171-1427986 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 23, 63 |
| Conread position: | 1488-1642 |
| Cow position: | chr10:22527783-22527951 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 129 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 1509-1644 |
| Cow position: | chr10:60697535-60697675 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 112 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 1520-1644 |
| Cow position: | chr10:37068336-37068464 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 1543-1643 |
| Cow position: | chr10:46886206-46886106 (view UCSC Genome Browser custom track) |
| Alignm length: | 101 |
| Alignm identity: | 83 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1465-1644 |
| Cow position: | chr11:69392704-69392517 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 1543-1644 |
| Cow position: | chr11:29960354-29960253 (view UCSC Genome Browser custom track) |
| Alignm length: | 102 |
| Alignm identity: | 84 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1548-1642 |
| Cow position: | chr11:42160003-42160098 (view UCSC Genome Browser custom track) |
| Alignm length: | 96 |
| Alignm identity: | 82 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 1464-1644 |
| Cow position: | chr12:30170806-30170603 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 152 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 1544-1644 |
| Cow position: | chr12:18123706-18123603 (view UCSC Genome Browser custom track) |
| Alignm length: | 104 |
| Alignm identity: | 86 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 1530-1644 |
| Cow position: | chr13:18696732-18696853 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 1542-1644 |
| Cow position: | chr13:37621449-37621347 (view UCSC Genome Browser custom track) |
| Alignm length: | 103 |
| Alignm identity: | 85 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1543-1644 |
| Cow position: | chr13:20666477-20666376 (view UCSC Genome Browser custom track) |
| Alignm length: | 102 |
| Alignm identity: | 84 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1543-1644 |
| Cow position: | chr13:45023300-45023199 (view UCSC Genome Browser custom track) |
| Alignm length: | 102 |
| Alignm identity: | 84 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1450-1644 |
| Cow position: | chr14:2038950-2038738 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 157 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 1465-1626 |
| Cow position: | chr15:25757919-25758081 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 22, 53 |
| Conread position: | 1553-1642 |
| Cow position: | chr15:36846151-36846062 (view UCSC Genome Browser custom track) |
| Alignm length: | 90 |
| Alignm identity: | 77 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1543-1642 |
| Cow position: | chr16:21370113-21370212 (view UCSC Genome Browser custom track) |
| Alignm length: | 100 |
| Alignm identity: | 84 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 6-469 |
| Cow position: | chr17:6862110-6861645 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 195, 153 |
| Conread position: | 490-1456 |
| Cow position: | chr17:6861650-6860684 (view UCSC Genome Browser custom track) |
| Alignm length: | 994 |
| Alignm identity: | 842 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 435 |
| Conread position: | 1465-1644 |
| Cow position: | chr18:49100227-49100429 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 1543-1640 |
| Cow position: | chr18:21081849-21081948 (view UCSC Genome Browser custom track) |
| Alignm length: | 100 |
| Alignm identity: | 84 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 1543-1644 |
| Cow position: | chr18:38937864-38937761 (view UCSC Genome Browser custom track) |
| Alignm length: | 105 |
| Alignm identity: | 88 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 37, 78 |
| Conread position: | 1545-1644 |
| Cow position: | chr18:49038503-49038401 (view UCSC Genome Browser custom track) |
| Alignm length: | 103 |
| Alignm identity: | 86 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 1553-1642 |
| Cow position: | chr18:23630574-23630663 (view UCSC Genome Browser custom track) |
| Alignm length: | 90 |
| Alignm identity: | 78 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1465-1644 |
| Cow position: | chr19:14506903-14507089 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 137 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 1543-1644 |
| Cow position: | chr19:23088049-23087945 (view UCSC Genome Browser custom track) |
| Alignm length: | 105 |
| Alignm identity: | 87 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 1543-1644 |
| Cow position: | chr19:38500229-38500128 (view UCSC Genome Browser custom track) |
| Alignm length: | 102 |
| Alignm identity: | 83 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1525-1644 |
| Cow position: | chr2:63074755-63074879 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 100 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 1543-1641 |
| Cow position: | chr2:53491374-53491475 (view UCSC Genome Browser custom track) |
| Alignm length: | 102 |
| Alignm identity: | 86 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 1543-1644 |
| Cow position: | chr2:46162034-46161930 (view UCSC Genome Browser custom track) |
| Alignm length: | 105 |
| Alignm identity: | 87 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 1360-1644 |
| Cow position: | chr20:19363045-19363347 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 179 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 7, 159 |
| Conread position: | 1484-1644 |
| Cow position: | chr21:37255836-37255996 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1487-1642 |
| Cow position: | chr21:38121304-38121139 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 129 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 1465-1641 |
| Cow position: | chr22:21421277-21421090 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 138 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 23, 125 |
| Conread position: | 1488-1644 |
| Cow position: | chr22:38320549-38320716 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 38, 163 |
| Conread position: | 1543-1643 |
| Cow position: | chr22:4017546-4017447 (view UCSC Genome Browser custom track) |
| Alignm length: | 101 |
| Alignm identity: | 84 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 1486-1644 |
| Cow position: | chr24:30897423-30897588 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 46, 31 |
| Conread position: | 1542-1644 |
| Cow position: | chr24:39791594-39791489 (view UCSC Genome Browser custom track) |
| Alignm length: | 106 |
| Alignm identity: | 87 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 1465-1644 |
| Cow position: | chr25:12778372-12778568 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 1474-1642 |
| Cow position: | chr25:11436651-11436835 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 138 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 1487-1644 |
| Cow position: | chr25:4681365-4681203 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 32, 140 |
| Conread position: | 1542-1642 |
| Cow position: | chr27:15454090-15454190 (view UCSC Genome Browser custom track) |
| Alignm length: | 101 |
| Alignm identity: | 83 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1543-1644 |
| Cow position: | chr27:22171180-22171281 (view UCSC Genome Browser custom track) |
| Alignm length: | 102 |
| Alignm identity: | 83 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1465-1644 |
| Cow position: | chr28:2762368-2762172 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 1465-1644 |
| Cow position: | chr28:26615049-26614850 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 1465-1637 |
| Cow position: | chr29:44681942-44682127 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 1538-1644 |
| Cow position: | chr29:17110036-17109930 (view UCSC Genome Browser custom track) |
| Alignm length: | 107 |
| Alignm identity: | 89 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1539-1642 |
| Cow position: | chr29:22735030-22735133 (view UCSC Genome Browser custom track) |
| Alignm length: | 104 |
| Alignm identity: | 85 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1543-1644 |
| Cow position: | chr3:10668830-10668931 (view UCSC Genome Browser custom track) |
| Alignm length: | 102 |
| Alignm identity: | 85 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1543-1644 |
| Cow position: | chr3:23408306-23408408 (view UCSC Genome Browser custom track) |
| Alignm length: | 103 |
| Alignm identity: | 86 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 1488-1643 |
| Cow position: | chr4:16221746-16221911 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 6-469 |
| Cow position: | chr5:15562666-15562203 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 195, 153 |
| Conread position: | 35-345 |
| Cow position: | chr5:69464561-69464886 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 37 |
| Conread position: | 335-891 |
| Cow position: | chr5:69465176-69465725 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 129 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 490-1441 |
| Cow position: | chr5:15562208-15561259 (view UCSC Genome Browser custom track) |
| Alignm length: | 980 |
| Alignm identity: | 841 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 111 |
| Conread position: | 1465-1641 |
| Cow position: | chr6:43651955-43651767 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 1487-1644 |
| Cow position: | chr6:47575093-47574918 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 133 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 1465-1644 |
| Cow position: | chr7:14174210-14174409 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 1487-1638 |
| Cow position: | chr7:37362056-37361900 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 43, 32 |
| Conread position: | 1487-1644 |
| Cow position: | chr7:48243842-48243687 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 98, 31 |
| Conread position: | 1543-1642 |
| Cow position: | chr7:28544295-28544193 (view UCSC Genome Browser custom track) |
| Alignm length: | 103 |
| Alignm identity: | 86 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 1460-1644 |
| Cow position: | chr8:10082087-10081888 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 1538-1640 |
| Cow position: | chr8:3339171-3339069 (view UCSC Genome Browser custom track) |
| Alignm length: | 103 |
| Alignm identity: | 86 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1452-1644 |
| Cow position: | chr9:41486389-41486186 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 36, 71 |
| Conread position: | 1487-1642 |
| Cow position: | chr9:54933004-54932842 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 128 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 36, 150 |
| Conread position: | 1529-1644 |
| Cow position: | chr9:19067718-19067839 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 99 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 12, 0 |