Cow genome map
| Conread name: | Ss1.1-rthg34_i15.5 |
| Conread position: | 251-719 |
| Cow position: | chr10:278403-278891 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 299 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 37, 18 |
| Conread position: | 252-535 |
| Cow position: | chr10:45647802-45647514 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 187 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 38, 17 |
| Conread position: | 266-535 |
| Cow position: | chr10:57370819-57371096 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 186 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 19, 57 |
| Conread position: | 292-713 |
| Cow position: | chr10:37520267-37520681 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 262 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 40, 25 |
| Conread position: | 328-527 |
| Cow position: | chr10:61110379-61110577 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 136 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 80, 151 |
| Conread position: | 262-535 |
| Cow position: | chr11:24108516-24108235 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 189 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 5, 72 |
| Conread position: | 262-719 |
| Cow position: | chr11:52846108-52845641 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 261 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 59, 73 |
| Conread position: | 274-725 |
| Cow position: | chr11:35332262-35332714 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 290 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 58, 20 |
| Conread position: | 318-631 |
| Cow position: | chr11:76276748-76277067 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 73, 61 |
| Conread position: | 332-719 |
| Cow position: | chr11:84966613-84966214 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 246 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 73, 216 |
| Conread position: | 343-719 |
| Cow position: | chr11:28125003-28124611 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 246 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 234-488 |
| Cow position: | chr13:54295103-54294849 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 20, 78 |
| Conread position: | 241-575 |
| Cow position: | chr13:17618179-17617836 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 220 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 42, 118 |
| Conread position: | 256-723 |
| Cow position: | chr13:17049577-17050064 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 300 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 27, 67 |
| Conread position: | 256-725 |
| Cow position: | chr13:3299938-3299450 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 301 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 28, 79 |
| Conread position: | 265-571 |
| Cow position: | chr13:44149991-44149687 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 202 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 14, 28 |
| Conread position: | 312-538 |
| Cow position: | chr13:34107480-34107256 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 91, 186 |
| Conread position: | 331-534 |
| Cow position: | chr13:49499829-49500025 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 73, 121 |
| Conread position: | 264-700 |
| Cow position: | chr14:35292009-35292455 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 281 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 24, 90 |
| Conread position: | 281-545 |
| Cow position: | chr15:13612198-13612461 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 184 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 40, 11 |
| Conread position: | 292-527 |
| Cow position: | chr15:11848051-11847817 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 166 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 113, 31 |
| Conread position: | 335-557 |
| Cow position: | chr15:3542896-3542673 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 15, 20 |
| Conread position: | 375-722 |
| Cow position: | chr15:27078475-27078819 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 225 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 104, 19 |
| Conread position: | 260-719 |
| Cow position: | chr16:41161298-41161766 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 284 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 61, 32 |
| Conread position: | 343-719 |
| Cow position: | chr16:3010925-3010537 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 243 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 62, 223 |
| Conread position: | 329-725 |
| Cow position: | chr17:18593899-18593490 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 252 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 59, 182 |
| Conread position: | 248-586 |
| Cow position: | chr18:40159369-40159023 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 220 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 40, 7 |
| Conread position: | 266-520 |
| Cow position: | chr18:16662862-16663112 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 172 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 139, 16 |
| Conread position: | 275-523 |
| Cow position: | chr18:17960035-17960284 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 47, 17 |
| Conread position: | 275-732 |
| Cow position: | chr18:32164992-32165459 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 285 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 130, 17 |
| Conread position: | 292-538 |
| Cow position: | chr18:38090433-38090680 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 29, 44 |
| Conread position: | 327-577 |
| Cow position: | chr19:4303449-4303204 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 26, 22 |
| Conread position: | 337-674 |
| Cow position: | chr19:13064310-13063964 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 68, 41 |
| Conread position: | 360-692 |
| Cow position: | chr19:28741020-28741364 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 220 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 10, 31 |
| Conread position: | 252-719 |
| Cow position: | chr2:9956652-9957136 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 302 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 36, 17 |
| Conread position: | 252-719 |
| Cow position: | chr2:9962652-9963136 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 302 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 36, 17 |
| Conread position: | 275-719 |
| Cow position: | chr2:44093756-44093298 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 280 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 46, 17 |
| Conread position: | 292-525 |
| Cow position: | chr2:60390002-60389766 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 159 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 41, 30 |
| Conread position: | 329-538 |
| Cow position: | chr2:54426111-54426318 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 75, 121 |
| Conread position: | 343-661 |
| Cow position: | chr2:10609458-10609781 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 203 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 62, 210 |
| Conread position: | 218-462 |
| Cow position: | chr20:10285704-10285949 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 167 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 41, 47 |
| Conread position: | 186-523 |
| Cow position: | chr21:404483-404819 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 222 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 103, 36 |
| Conread position: | 251-671 |
| Cow position: | chr21:29727234-29726804 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 277 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 32, 335 |
| Conread position: | 340-717 |
| Cow position: | chr21:35780910-35781291 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 236 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 68, 80 |
| Conread position: | 267-539 |
| Cow position: | chr22:36364727-36364457 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 63, 117 |
| Conread position: | 332-719 |
| Cow position: | chr22:21193413-21193811 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 249 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 73, 109 |
| Conread position: | 287-714 |
| Cow position: | chr23:8705693-8705252 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 274 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 9, 50 |
| Conread position: | 332-719 |
| Cow position: | chr23:609511-609114 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 247 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 73, 212 |
| Conread position: | 74-526 |
| Cow position: | chr24:1104632-1104182 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 185, 99 |
| Conread position: | 342-709 |
| Cow position: | chr24:12467104-12466723 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 240 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 63, 308 |
| Conread position: | 255-719 |
| Cow position: | chr25:19337663-19338144 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 297 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 33, 14 |
| Conread position: | 291-630 |
| Cow position: | chr25:38634975-38634628 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 223 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 41, 24 |
| Conread position: | 275-535 |
| Cow position: | chr27:16031558-16031818 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 118, 17 |
| Conread position: | 252-535 |
| Cow position: | chr28:24885775-24885486 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 186 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 36, 17 |
| Conread position: | 252-694 |
| Cow position: | chr28:25803268-25803717 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 290 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 33, 135 |
| Conread position: | 269-575 |
| Cow position: | chr28:8966129-8966434 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 208 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 14, 98 |
| Conread position: | 294-719 |
| Cow position: | chr28:7335856-7335419 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 269 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 27, 41 |
| Conread position: | 311-541 |
| Cow position: | chr28:20425064-20425295 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 59, 11 |
| Conread position: | 328-535 |
| Cow position: | chr28:9107308-9107095 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 146 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 7, 19 |
| Conread position: | 343-719 |
| Cow position: | chr28:1956187-1955798 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 243 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 62, 198 |
| Conread position: | 295-731 |
| Cow position: | chr29:20466133-20465685 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 290 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 27, 34 |
| Conread position: | 329-694 |
| Cow position: | chr29:37042803-37043175 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 237 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 41, 52 |
| Conread position: | 252-714 |
| Cow position: | chr3:40337344-40337823 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 297 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 36, 12 |
| Conread position: | 269-527 |
| Cow position: | chr3:46686449-46686698 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 177 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 53, 9 |
| Conread position: | 292-535 |
| Cow position: | chr3:49998892-49998648 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 113, 0 |
| Conread position: | 329-527 |
| Cow position: | chr3:66608295-66608094 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 41, 54 |
| Conread position: | 336-533 |
| Cow position: | chr3:54681401-54681599 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 43, 96 |
| Conread position: | 343-732 |
| Cow position: | chr3:41082866-41082469 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 248 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 62, 161 |
| Conread position: | 252-719 |
| Cow position: | chr4:17033897-17034385 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 302 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 36, 90 |
| Conread position: | 275-700 |
| Cow position: | chr4:29319929-29320351 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 262 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 46, 17 |
| Conread position: | 251-552 |
| Cow position: | chr5:49816240-49815935 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 20, 12 |
| Conread position: | 252-732 |
| Cow position: | chr6:9264493-9264985 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 313 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 31, 12 |
| Conread position: | 292-689 |
| Cow position: | chr6:36519763-36519366 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 249 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 129, 97 |
| Conread position: | 294-719 |
| Cow position: | chr6:13308589-13309026 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 270 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 27, 42 |
| Conread position: | 332-535 |
| Cow position: | chr6:6439562-6439362 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 139 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 76, 119 |
| Conread position: | 343-714 |
| Cow position: | chr6:1795920-1796303 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 240 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 62, 210 |
| Conread position: | 252-714 |
| Cow position: | chr7:40509834-40509368 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 290 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 36, 17 |
| Conread position: | 294-714 |
| Cow position: | chr7:54854256-54853825 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 263 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 22, 45 |
| Conread position: | 261-535 |
| Cow position: | chr8:12446302-12446576 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 173 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 148, 31 |
| Conread position: | 292-722 |
| Cow position: | chr8:23255101-23254674 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 264 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 18, 22 |
| Conread position: | 333-719 |
| Cow position: | chr8:3956073-3955678 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 245 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 37, 48 |
| Conread position: | 334-719 |
| Cow position: | chr9:56176455-56176059 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 247 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 176, 167 |
| Conread position: | 273-732 |
| Cow position: | chrX:18920304-18919830 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 303 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 13, 51 |
| Conread position: | 292-540 |
| Cow position: | chrX:8513930-8513680 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 169 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 41, 26 |
| Conread position: | 333-540 |
| Cow position: | chrX:19167353-19167559 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 37, 75 |