Cow genome map

Conread name: Ss1.1-rton1209b_m9.5

Conread position: 9-233
Cow position: chr19:33584085-33584309 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 159
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 0, 0

Conread position: 27-236
Cow position: chr19:33600347-33600556 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 142
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 313-477
Cow position: chr19:33831061-33831226 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 119
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 6, 0

Conread position: 313-477
Cow position: chr19:33975611-33975775 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 119
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 314-474
Cow position: chr19:33816410-33816570 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 120
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 317-474
Cow position: chr19:33602242-33602399 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 120
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 318-474
Cow position: chr19:33772631-33772787 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 122
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 472-626
Cow position: chr19:33587650-33587804 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 114
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 633-761
Cow position: chr19:33587890-33588018 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 99
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 633-761
Cow position: chr19:33603387-33603515 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 105
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 757-984
Cow position: chr19:33589465-33589691 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 182
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 0

Conread position: 764-973
Cow position: chr19:33774135-33774344 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 152
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 0, 0

Conread position: 768-973
Cow position: chr19:33817344-33817549 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 135
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 768-975
Cow position: chr19:33977001-33977208 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 151
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 0, 0

Conread position: 768-976
Cow position: chr19:33902669-33902877 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 144
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 768-976
Cow position: chr19:33933289-33933497 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 140
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 768-983
Cow position: chr19:33604856-33605071 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 160
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 0, 0

Conread position: 768-983
Cow position: chr19:33835703-33835919 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 149
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 207, 0

Conread position: 789-973
Cow position: chr19:33710080-33710264 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 125
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 1-237
Cow position: chr23:472579-472815 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 9-233
Cow position: chr23:547914-548138 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 192
Alignm E-value: 0
Alignm gaps (pig, cow): 162, 171

Conread position: 9-233
Cow position: chr23:581563-581787 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 190
Alignm E-value: 0
Alignm gaps (pig, cow): 162, 171

Conread position: 9-233
Cow position: chr23:597730-597954 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 191
Alignm E-value: 0
Alignm gaps (pig, cow): 162, 171

Conread position: 9-233
Cow position: chr23:621061-621285 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 162, 171

Conread position: 14-233
Cow position: chr23:484686-484905 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 184
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 23-236
Cow position: chr23:492717-492930 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 157
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 147, 155

Conread position: 24-188
Cow position: chr23:532471-532634 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 99
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 108, 0

Conread position: 24-233
Cow position: chr23:516469-516678 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 166
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 154

Conread position: 32-223
Cow position: chr23:371184-371374 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 136
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 140, 13

Conread position: 33-236
Cow position: chr23:441306-441512 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 148
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 149, 0

Conread position: 44-223
Cow position: chr23:339747-339926 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 131
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 145, 133

Conread position: 45-223
Cow position: chr23:432113-432291 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 133
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 126, 137

Conread position: 45-225
Cow position: chr23:318343-318523 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 140
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 126, 137

Conread position: 45-233
Cow position: chr23:454533-454724 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 135
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 137, 0

Conread position: 50-236
Cow position: chr23:327544-327730 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 136
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 137, 128

Conread position: 232-339
Cow position: chr23:473703-473811 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 89
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 88, 0

Conread position: 292-474
Cow position: chr23:321035-321217 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 138
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 0, 0

Conread position: 305-474
Cow position: chr23:442460-442629 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 131
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 0, 0

Conread position: 312-474
Cow position: chr23:485982-486144 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 138
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 0, 0

Conread position: 313-474
Cow position: chr23:340592-340753 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 124
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 313-474
Cow position: chr23:373206-373367 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 125
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 314-474
Cow position: chr23:329461-329621 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 122
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 314-474
Cow position: chr23:474034-474194 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 149
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 314-474
Cow position: chr23:493753-493913 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 149
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 314-474
Cow position: chr23:548748-548908 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 139
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 314-474
Cow position: chr23:582486-582646 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 133
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 0, 0

Conread position: 314-474
Cow position: chr23:623411-623571 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 134
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 0, 0

Conread position: 317-474
Cow position: chr23:456232-456390 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 125
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 83, 0

Conread position: 317-474
Cow position: chr23:535861-536018 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 120
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 317-474
Cow position: chr23:601053-601210 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 136
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 0, 0

Conread position: 319-474
Cow position: chr23:517991-518146 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 112
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 321-474
Cow position: chr23:434287-434440 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 121
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 472-618
Cow position: chr23:495429-495575 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 114
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 472-635
Cow position: chr23:474739-474902 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 154
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 472-635
Cow position: chr23:486409-486572 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 129
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 0, 0

Conread position: 472-635
Cow position: chr23:549683-549846 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 126
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 472-635
Cow position: chr23:584136-584299 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 123
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 472-635
Cow position: chr23:602074-602237 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 126
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 472-635
Cow position: chr23:624714-624877 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 125
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 472-647
Cow position: chr23:518508-518683 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 122
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 493-635
Cow position: chr23:434764-434906 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 104
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 632-761
Cow position: chr23:323092-323221 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 100
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 633-761
Cow position: chr23:435015-435143 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 99
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 27, 36

Conread position: 633-761
Cow position: chr23:475000-475128 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 121
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 0, 0

Conread position: 633-761
Cow position: chr23:486858-486986 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 115
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 0, 0

Conread position: 633-761
Cow position: chr23:518757-518885 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 100
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 633-761
Cow position: chr23:549938-550066 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 116
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 0, 0

Conread position: 633-761
Cow position: chr23:584391-584519 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 115
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 0, 0

Conread position: 633-761
Cow position: chr23:602329-602457 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 115
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 0, 0

Conread position: 633-761
Cow position: chr23:624969-625097 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 115
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 0, 0

Conread position: 633-778
Cow position: chr23:536566-536712 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 112
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 139, 0

Conread position: 633-792
Cow position: chr23:331205-331361 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 115
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 142, 0

Conread position: 634-761
Cow position: chr23:561987-562114 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 115
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 0, 0

Conread position: 761-983
Cow position: chr23:475295-475517 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 768-976
Cow position: chr23:331435-331643 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 169
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 768-977
Cow position: chr23:323475-323684 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 171
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 768-977
Cow position: chr23:373992-374201 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 167
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 768-983
Cow position: chr23:497172-497387 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 187
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 768-983
Cow position: chr23:562292-562507 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 186
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 768-983
Cow position: chr23:584697-584912 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 186
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 768-983
Cow position: chr23:602635-602850 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 185
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 768-983
Cow position: chr23:625275-625490 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 187
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 769-970
Cow position: chr23:435282-435483 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 153
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 0, 0

Conread position: 770-977
Cow position: chr23:341555-341762 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 164
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 771-983
Cow position: chr23:457058-457270 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 167
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 771-984
Cow position: chr23:443665-443878 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 166
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 41, 37

Conread position: 772-983
Cow position: chr23:487414-487625 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 188
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 795-983
Cow position: chr23:537414-537602 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 157
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 842-983
Cow position: chr23:519413-519554 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 122
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 0, 0

Conread position: 980-1306
Cow position: chr23:475913-476233 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 247, 177

Conread position: 772-967
Cow position: chr5:20420877-20421072 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 134
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 201-476
Cow position: chr7:267384-267663 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 192
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 87, 162