Cow genome map
| Conread name: | Ss1.1-ruio32_h12.5 |
| Conread position: | 894-1267 |
| Cow position: | chr1:51696676-51697046 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 177, 100 |
| Conread position: | 1075-1283 |
| Cow position: | chr1:53484842-53485042 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 176 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 68 |
| Conread position: | 7-164 |
| Cow position: | chr10:43409015-43408853 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 129 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 158-284 |
| Cow position: | chr10:43408723-43408596 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 108 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 267-1274 |
| Cow position: | chr10:64155842-64154800 (view UCSC Genome Browser custom track) |
| Alignm length: | 1071 |
| Alignm identity: | 838 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 56 |
| Conread position: | 1037-1269 |
| Cow position: | chr10:43409069-43409298 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 149 |
| Conread position: | 461-652 |
| Cow position: | chr11:13156569-13156376 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 158 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 17, 66 |
| Conread position: | 723-1188 |
| Cow position: | chr11:13156333-13155881 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 78 |
| Conread position: | 3-1256 |
| Cow position: | chr13:44193338-44192073 (view UCSC Genome Browser custom track) |
| Alignm length: | 1312 |
| Alignm identity: | 1045 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 140 |
| Conread position: | 470-677 |
| Cow position: | chr13:32827545-32827337 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 51 |
| Conread position: | 798-1268 |
| Cow position: | chr13:32827349-32826891 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 7 |
| Conread position: | 1015-1183 |
| Cow position: | chr13:8868580-8868408 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 146 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 1138-1285 |
| Cow position: | chr13:21223762-21223904 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 21, 38 |
| Conread position: | 300-792 |
| Cow position: | chr14:13341842-13342357 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 26 |
| Conread position: | 530-931 |
| Cow position: | chr14:13343631-13344047 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 54 |
| Conread position: | 225-436 |
| Cow position: | chr16:17372805-17373021 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 174 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 839-1256 |
| Cow position: | chr16:16093655-16093251 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 116 |
| Conread position: | 929-1239 |
| Cow position: | chr17:30287472-30287178 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 230, 25 |
| Conread position: | 792-1263 |
| Cow position: | chr18:30330577-30331029 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 18 |
| Conread position: | 894-1150 |
| Cow position: | chr19:12529833-12530090 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 127 |
| Conread position: | 938-1070 |
| Cow position: | chr19:25986639-25986516 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 1112-1277 |
| Cow position: | chr19:8158910-8158751 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 47, 76 |
| Conread position: | 5-824 |
| Cow position: | chr2:1337796-1336927 (view UCSC Genome Browser custom track) |
| Alignm length: | 878 |
| Alignm identity: | 672 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 318 |
| Conread position: | 839-958 |
| Cow position: | chr2:1335878-1335759 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 102 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 83, 109 |
| Conread position: | 1139-1292 |
| Cow position: | chr2:31915246-31915099 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 20, 49 |
| Conread position: | 1111-1247 |
| Cow position: | chr20:23027317-23027448 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 109 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 48, 77 |
| Conread position: | 5-136 |
| Cow position: | chr21:16586797-16586928 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 43, 14 |
| Conread position: | 703-1271 |
| Cow position: | chr21:38859777-38860343 (view UCSC Genome Browser custom track) |
| Alignm length: | 583 |
| Alignm identity: | 474 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 49 |
| Conread position: | 846-1070 |
| Cow position: | chr21:16586916-16587132 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 102 |
| Conread position: | 277-550 |
| Cow position: | chr22:39520993-39520722 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 208 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 55, 83 |
| Conread position: | 420-807 |
| Cow position: | chr22:25992572-25992145 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 11 |
| Conread position: | 1146-1293 |
| Cow position: | chr22:25992567-25992708 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 13, 42 |
| Conread position: | 135-461 |
| Cow position: | chr23:1315728-1316053 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 20 |
| Conread position: | 470-699 |
| Cow position: | chr23:1316177-1316395 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 181 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 66, 60 |
| Conread position: | 305-436 |
| Cow position: | chr24:3859588-3859453 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 107 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 62, 26 |
| Conread position: | 581-1255 |
| Cow position: | chr24:43086351-43085689 (view UCSC Genome Browser custom track) |
| Alignm length: | 691 |
| Alignm identity: | 533 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 51 |
| Conread position: | 952-1284 |
| Cow position: | chr24:19041145-19040824 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 12 |
| Conread position: | 1027-1265 |
| Cow position: | chr26:3020823-3021054 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 151 |
| Conread position: | 1050-1291 |
| Cow position: | chr26:2345635-2345409 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 191 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 109, 10 |
| Conread position: | 1072-1239 |
| Cow position: | chr26:16849954-16850113 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 1074-1243 |
| Cow position: | chr26:21279351-21279191 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 83, 61 |
| Conread position: | 1091-1248 |
| Cow position: | chr27:18937616-18937768 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 124 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 64, 99 |
| Conread position: | 5-463 |
| Cow position: | chr28:16232266-16232734 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 196 |
| Conread position: | 477-1119 |
| Cow position: | chr28:16233117-16233766 (view UCSC Genome Browser custom track) |
| Alignm length: | 677 |
| Alignm identity: | 531 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 17 |
| Conread position: | 994-1274 |
| Cow position: | chr28:20181257-20181532 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 16 |
| Conread position: | 1126-1254 |
| Cow position: | chr28:16233939-16234062 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 105 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 33, 64 |
| Conread position: | 470-658 |
| Cow position: | chr29:32528879-32529075 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 59, 172 |
| Conread position: | 1020-1287 |
| Cow position: | chr29:449456-449719 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 169 |
| Conread position: | 1027-1199 |
| Cow position: | chr29:32529361-32529535 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 45, 77 |
| Conread position: | 1111-1292 |
| Cow position: | chr29:603315-603139 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 133 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 41, 14 |
| Conread position: | 6-164 |
| Cow position: | chr4:65214289-65214126 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 155-446 |
| Cow position: | chr4:65213767-65213475 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 207, 46 |
| Conread position: | 1081-1265 |
| Cow position: | chr4:49472760-49472587 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 145 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 74, 57 |
| Conread position: | 1082-1287 |
| Cow position: | chr4:36251858-36252053 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 77, 58 |
| Conread position: | 1134-1285 |
| Cow position: | chr5:33817457-33817307 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 25, 42 |
| Conread position: | 5-1227 |
| Cow position: | chr6:13099482-13098272 (view UCSC Genome Browser custom track) |
| Alignm length: | 1266 |
| Alignm identity: | 976 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 201 |
| Conread position: | 238-533 |
| Cow position: | chr6:44838842-44838535 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 24 |
| Conread position: | 519-884 |
| Cow position: | chr6:44837595-44837206 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 36 |
| Conread position: | 760-1274 |
| Cow position: | chr6:50335917-50335415 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 432 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 158 |
| Conread position: | 891-1100 |
| Cow position: | chr6:44836994-44836795 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 182 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 41 |
| Conread position: | 1032-1272 |
| Cow position: | chr6:45094581-45094345 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 157 |
| Conread position: | 1111-1282 |
| Cow position: | chr6:14863689-14863524 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 48, 77 |
| Conread position: | 388-985 |
| Cow position: | chr7:24451594-24450986 (view UCSC Genome Browser custom track) |
| Alignm length: | 624 |
| Alignm identity: | 461 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 149 |
| Conread position: | 851-1289 |
| Cow position: | chr7:8830663-8831080 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 29 |
| Conread position: | 1061-1288 |
| Cow position: | chr7:11762037-11762259 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 175 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 10, 100 |
| Conread position: | 1116-1273 |
| Cow position: | chr7:24450444-24450292 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 124 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 44, 73 |
| Conread position: | 711-1272 |
| Cow position: | chr8:54078385-54077835 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 462 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 111 |