Cow genome map
| Conread name: | Ss1.1-unkn-05A10at3.5 |
| Conread position: | 379-572 |
| Cow position: | chr1:28622197-28622390 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 569-917 |
| Cow position: | chr1:28625843-28626191 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 230 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 130, 144 |
| Conread position: | 1688-1869 |
| Cow position: | chr1:28645488-28645667 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 172, 0 |
| Conread position: | 1-129 |
| Cow position: | chr10:13735665-13735793 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 103 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 373-572 |
| Cow position: | chr10:13723545-13723346 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 168 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 373-572 |
| Cow position: | chr10:13737087-13737286 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 169 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 566-755 |
| Cow position: | chr10:13737804-13737993 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 154 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 572-755 |
| Cow position: | chr10:13722780-13722597 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 150 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 754-920 |
| Cow position: | chr10:13722422-13722256 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 754-920 |
| Cow position: | chr10:13738168-13738334 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1045-1318 |
| Cow position: | chr10:13740141-13740414 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1045-1360 |
| Cow position: | chr10:13721447-13721131 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 276, 297 |
| Conread position: | 1354-1559 |
| Cow position: | chr10:13740760-13740965 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 147 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1354-1568 |
| Cow position: | chr10:13720912-13720698 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1552-1686 |
| Cow position: | chr10:13720593-13720459 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 102 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1686-1961 |
| Cow position: | chr10:13720368-13720093 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1686-1961 |
| Cow position: | chr10:13742312-13742587 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2057-2179 |
| Cow position: | chr10:13744437-13744559 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2057-2194 |
| Cow position: | chr10:13718990-13718853 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 115 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 373-572 |
| Cow position: | chr13:46550157-46549958 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 162 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 566-920 |
| Cow position: | chr13:46549859-46549504 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 1167-1559 |
| Cow position: | chr13:46548536-46548144 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 261 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 172, 153 |
| Conread position: | 1686-1859 |
| Cow position: | chr13:46547854-46547680 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 147 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 0 |
| Conread position: | 1-127 |
| Cow position: | chr19:22379993-22379867 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 119 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-129 |
| Cow position: | chr19:2421986-2421858 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 120 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-129 |
| Cow position: | chr19:2447361-2447233 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 117 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-129 |
| Cow position: | chr19:22479516-22479388 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-129 |
| Cow position: | chr19:22525826-22525698 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 120 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-129 |
| Cow position: | chr19:22708530-22708402 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 127-257 |
| Cow position: | chr19:2446136-2446006 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 104 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 127-257 |
| Cow position: | chr19:22525198-22525068 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 127-258 |
| Cow position: | chr19:2421262-2421131 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 127-272 |
| Cow position: | chr19:22478178-22478032 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 132, 0 |
| Conread position: | 251-375 |
| Cow position: | chr19:2445336-2445212 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 253-375 |
| Cow position: | chr19:22524662-22524540 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 119 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 254-373 |
| Cow position: | chr19:22477487-22477368 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 93 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 254-375 |
| Cow position: | chr19:2419370-2419249 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 102 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 370-572 |
| Cow position: | chr19:2419091-2418889 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 373-572 |
| Cow position: | chr19:2445081-2444882 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 373-572 |
| Cow position: | chr19:22477244-22477045 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 373-572 |
| Cow position: | chr19:22707500-22707301 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 373-580 |
| Cow position: | chr19:22524416-22524209 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 569-755 |
| Cow position: | chr19:22475914-22475728 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 177 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 569-755 |
| Cow position: | chr19:22523027-22522841 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 175 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 572-755 |
| Cow position: | chr19:2418178-2417995 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 171 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 572-755 |
| Cow position: | chr19:2444177-2443994 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 167 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 572-755 |
| Cow position: | chr19:22706962-22706779 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 149 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 148, 139 |
| Conread position: | 754-921 |
| Cow position: | chr19:22706204-22706037 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 129 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 754-926 |
| Cow position: | chr19:2417719-2417547 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 148 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 754-926 |
| Cow position: | chr19:2443914-2443742 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 143 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 754-926 |
| Cow position: | chr19:22475643-22475471 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 153 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 754-926 |
| Cow position: | chr19:22522756-22522584 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 151 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 922-1047 |
| Cow position: | chr19:2417464-2417339 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 104 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 922-1047 |
| Cow position: | chr19:22522487-22522362 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 119 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 922-1050 |
| Cow position: | chr19:22475389-22475261 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1042-1316 |
| Cow position: | chr19:22705181-22704907 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1045-1356 |
| Cow position: | chr19:2416942-2416631 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1045-1356 |
| Cow position: | chr19:2443358-2443047 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1045-1356 |
| Cow position: | chr19:22474114-22473803 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1045-1356 |
| Cow position: | chr19:22522100-22521789 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1354-1559 |
| Cow position: | chr19:2416547-2416342 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 173 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1354-1559 |
| Cow position: | chr19:2442963-2442758 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 172 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1354-1559 |
| Cow position: | chr19:22473168-22472963 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 171 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1354-1559 |
| Cow position: | chr19:22521153-22520948 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1354-1559 |
| Cow position: | chr19:22704753-22704548 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 168 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1553-1686 |
| Cow position: | chr19:2442230-2442097 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 128 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1556-1686 |
| Cow position: | chr19:22471802-22471672 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1556-1686 |
| Cow position: | chr19:22519700-22519570 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 127 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1557-1686 |
| Cow position: | chr19:2416015-2415886 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 125 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1558-1684 |
| Cow position: | chr19:22704475-22704349 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 99 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1686-1858 |
| Cow position: | chr19:22703524-22703352 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 159 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1686-1859 |
| Cow position: | chr19:2415797-2415624 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 163 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1686-1859 |
| Cow position: | chr19:2442008-2441835 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 162 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1686-1859 |
| Cow position: | chr19:22471587-22471414 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 163 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1686-1862 |
| Cow position: | chr19:22519481-22519305 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 163 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1856-1961 |
| Cow position: | chr19:2415361-2415256 (view UCSC Genome Browser custom track) |
| Alignm length: | 106 |
| Alignm identity: | 89 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1856-1961 |
| Cow position: | chr19:2441755-2441650 (view UCSC Genome Browser custom track) |
| Alignm length: | 106 |
| Alignm identity: | 90 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1856-1961 |
| Cow position: | chr19:22471202-22471097 (view UCSC Genome Browser custom track) |
| Alignm length: | 106 |
| Alignm identity: | 86 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1959-2058 |
| Cow position: | chr19:2415139-2415040 (view UCSC Genome Browser custom track) |
| Alignm length: | 100 |
| Alignm identity: | 85 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1964-2056 |
| Cow position: | chr19:22519231-22519139 (view UCSC Genome Browser custom track) |
| Alignm length: | 93 |
| Alignm identity: | 84 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2057-2186 |
| Cow position: | chr19:22702806-22702678 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 103 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 40, 45 |
| Conread position: | 2057-2270 |
| Cow position: | chr19:22469163-22468949 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 179 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 140 |
| Conread position: | 2057-2282 |
| Cow position: | chr19:2440162-2439936 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 201 |
| Conread position: | 2057-2287 |
| Cow position: | chr19:2413076-2412845 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 224, 0 |
| Conread position: | 2057-2410 |
| Cow position: | chr19:22517854-22517496 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 226, 0 |