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Cow genome map

           
Conread name:
           
Thy1-THY010067H04
        

               
Conread position:
               
39-326
               

               
Cow position:
               
chr1:78942818-78943116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
30, 53
               

               
Conread position:
               
67-323
               

               
Cow position:
               
chr1:73255325-73255585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
96, 19
               

               
Conread position:
               
75-323
               

               
Cow position:
               
chr1:80616476-80616727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
22, 82
               

               
Conread position:
               
83-239
               

               
Cow position:
               
chr1:10995620-10995783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
94-322
               

               
Cow position:
               
chr1:48940098-48940333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
69, 32
               

               
Conread position:
               
94-323
               

               
Cow position:
               
chr1:3830801-3830577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
69, 10
               

               
Conread position:
               
94-323
               

               
Cow position:
               
chr1:44202798-44203022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
70, 12
               

               
Conread position:
               
96-323
               

               
Cow position:
               
chr1:44589393-44589619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
66, 124
               

               
Conread position:
               
99-311
               

               
Cow position:
               
chr1:62797967-62797754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
64, 26
               

               
Conread position:
               
101-287
               

               
Cow position:
               
chr1:26439853-26440045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
101-325
               

               
Cow position:
               
chr1:36266306-36266540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
101-325
               

               
Cow position:
               
chr1:39014293-39014517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
44, 68
               

               
Conread position:
               
101-326
               

               
Cow position:
               
chr1:30310694-30310469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
101-326
               

               
Cow position:
               
chr1:32895333-32895101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
61, 47
               

               
Conread position:
               
101-349
               

               
Cow position:
               
chr1:71299210-71298963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
139, 61
               

               
Conread position:
               
122-325
               

               
Cow position:
               
chr1:54626536-54626744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
126-323
               

               
Cow position:
               
chr1:17915603-17915401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
36, 90
               

               
Conread position:
               
133-323
               

               
Cow position:
               
chr1:68809955-68810141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
108, 34
               

               
Conread position:
               
161-322
               

               
Cow position:
               
chr1:86999887-87000050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
120, 0
               

               
Conread position:
               
164-324
               

               
Cow position:
               
chr1:99303180-99303340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
101, 112
               

               
Conread position:
               
179-324
               

               
Cow position:
               
chr1:45857538-45857683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
102, 54
               

               
Conread position:
               
179-332
               

               
Cow position:
               
chr1:60436111-60436267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
192-320
               

               
Cow position:
               
chr1:36664143-36664012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
197-332
               

               
Cow position:
               
chr1:15999341-15999477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
83, 26
               

               
Conread position:
               
40-309
               

               
Cow position:
               
chr10:30556514-30556247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
17, 214
               

               
Conread position:
               
41-239
               

               
Cow position:
               
chr10:42553689-42553483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
16, 42
               

               
Conread position:
               
41-325
               

               
Cow position:
               
chr10:44030033-44030320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
16, 27
               

               
Conread position:
               
62-321
               

               
Cow position:
               
chr10:3533247-3532982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
28, 6
               

               
Conread position:
               
68-321
               

               
Cow position:
               
chr10:49305652-49305903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
99, 16
               

               
Conread position:
               
85-322
               

               
Cow position:
               
chr10:16898679-16898453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
196, 17
               

               
Conread position:
               
93-272
               

               
Cow position:
               
chr10:13113490-13113673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
69, 116
               

               
Conread position:
               
94-323
               

               
Cow position:
               
chr10:24081976-24081758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
70, 143
               

               
Conread position:
               
95-323
               

               
Cow position:
               
chr10:8803839-8804075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
101-321
               

               
Cow position:
               
chr10:52960062-52959833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
62, 165
               

               
Conread position:
               
101-324
               

               
Cow position:
               
chr10:65898527-65898748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
16, 27
               

               
Conread position:
               
101-325
               

               
Cow position:
               
chr10:1701672-1701906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
62, 145
               

               
Conread position:
               
101-325
               

               
Cow position:
               
chr10:2603700-2603469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
103-323
               

               
Cow position:
               
chr10:60752541-60752325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
66, 100
               

               
Conread position:
               
122-321
               

               
Cow position:
               
chr10:66008493-66008289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
52, 46
               

               
Conread position:
               
126-323
               

               
Cow position:
               
chr10:19592606-19592405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
41, 92
               

               
Conread position:
               
134-318
               

               
Cow position:
               
chr10:53416504-53416694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
29, 15
               

               
Conread position:
               
150-333
               

               
Cow position:
               
chr10:21694066-21693885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
127, 9
               

               
Conread position:
               
163-315
               

               
Cow position:
               
chr10:63994845-63994999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
113, 0
               

               
Conread position:
               
163-333
               

               
Cow position:
               
chr10:6691439-6691611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
47, 36
               

               
Conread position:
               
174-322
               

               
Cow position:
               
chr10:68098020-68098168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
214-325
               

               
Cow position:
               
chr10:63374909-63374797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
61, 54
               

               
Conread position:
               
31-326
               

               
Cow position:
               
chr11:17243202-17243486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
26, 53
               

               
Conread position:
               
95-311
               

               
Cow position:
               
chr11:8173167-8172943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
101-307
               

               
Cow position:
               
chr11:8014116-8014322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
180, 16
               

               
Conread position:
               
101-321
               

               
Cow position:
               
chr11:16102123-16102351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
61, 122
               

               
Conread position:
               
101-323
               

               
Cow position:
               
chr11:73308582-73308349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
102-324
               

               
Cow position:
               
chr11:24209848-24209631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
60, 153
               

               
Conread position:
               
102-332
               

               
Cow position:
               
chr11:82584978-82585217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
61, 39
               

               
Conread position:
               
123-330
               

               
Cow position:
               
chr11:28082553-28082758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
76, 40
               

               
Conread position:
               
146-324
               

               
Cow position:
               
chr11:43885966-43885783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
17, 154
               

               
Conread position:
               
150-332
               

               
Cow position:
               
chr11:81485042-81485226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
5, 170
               

               
Conread position:
               
179-327
               

               
Cow position:
               
chr11:44696947-44697096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
100, 140
               

               
Conread position:
               
94-320
               

               
Cow position:
               
chr12:3842732-3842494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
46, 230
               

               
Conread position:
               
96-239
               

               
Cow position:
               
chr12:9598570-9598421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
99-331
               

               
Cow position:
               
chr12:790930-791169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
101-297
               

               
Cow position:
               
chr12:16171108-16170903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
61, 104
               

               
Conread position:
               
94-325
               

               
Cow position:
               
chr13:4607873-4608099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
21, 30
               

               
Conread position:
               
100-314
               

               
Cow position:
               
chr13:46716954-46716734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
101-326
               

               
Cow position:
               
chr13:60471879-60471647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
62, 205
               

               
Conread position:
               
126-321
               

               
Cow position:
               
chr13:15004701-15004500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
40, 82
               

               
Conread position:
               
133-322
               

               
Cow position:
               
chr13:23510088-23509896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
29, 88
               

               
Conread position:
               
167-326
               

               
Cow position:
               
chr13:9557803-9557643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
110, 148
               

               
Conread position:
               
174-313
               

               
Cow position:
               
chr13:19501166-19501025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
85-309
               

               
Cow position:
               
chr14:36793063-36792834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
77, 8
               

               
Conread position:
               
93-326
               

               
Cow position:
               
chr14:24517617-24517384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
7, 143
               

               
Conread position:
               
94-320
               

               
Cow position:
               
chr14:34375833-34375607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
69, 16
               

               
Conread position:
               
94-323
               

               
Cow position:
               
chr14:17668659-17668422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
96-335
               

               
Cow position:
               
chr14:17989334-17989098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
66, 170
               

               
Conread position:
               
99-321
               

               
Cow position:
               
chr14:37199816-37199593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
63, 114
               

               
Conread position:
               
101-323
               

               
Cow position:
               
chr14:33561698-33561927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
60, 82
               

               
Conread position:
               
164-325
               

               
Cow position:
               
chr14:35154879-35155040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
116, 21
               

               
Conread position:
               
191-321
               

               
Cow position:
               
chr14:35086841-35086709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
64-325
               

               
Cow position:
               
chr15:26868426-26868687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
51, 19
               

               
Conread position:
               
68-322
               

               
Cow position:
               
chr15:27285409-27285661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
21, 162
               

               
Conread position:
               
88-330
               

               
Cow position:
               
chr15:1597062-1596827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
50, 12
               

               
Conread position:
               
89-332
               

               
Cow position:
               
chr15:24571312-24571561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
72, 13
               

               
Conread position:
               
94-323
               

               
Cow position:
               
chr15:43748682-43748447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
94-327
               

               
Cow position:
               
chr15:30154822-30154597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
182, 67
               

               
Conread position:
               
99-325
               

               
Cow position:
               
chr15:29532339-29532572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
63, 218
               

               
Conread position:
               
101-321
               

               
Cow position:
               
chr15:5505715-5505488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
61, 135
               

               
Conread position:
               
122-323
               

               
Cow position:
               
chr15:29412525-29412729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
71, 50
               

               
Conread position:
               
123-332
               

               
Cow position:
               
chr15:37798410-37798192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
39, 144
               

               
Conread position:
               
126-328
               

               
Cow position:
               
chr15:43335365-43335151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
31, 154
               

               
Conread position:
               
87-273
               

               
Cow position:
               
chr16:53518414-53518599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
84, 10
               

               
Conread position:
               
94-324
               

               
Cow position:
               
chr16:53426990-53426754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
54, 207
               

               
Conread position:
               
94-332
               

               
Cow position:
               
chr16:53499399-53499180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
95-318
               

               
Cow position:
               
chr16:7317219-7316997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
63, 167
               

               
Conread position:
               
100-324
               

               
Cow position:
               
chr16:54725064-54724833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
63, 47
               

               
Conread position:
               
102-326
               

               
Cow position:
               
chr16:11785002-11785233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
61, 223
               

               
Conread position:
               
107-318
               

               
Cow position:
               
chr16:26798558-26798340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
55, 129
               

               
Conread position:
               
114-320
               

               
Cow position:
               
chr16:17019376-17019168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
61, 114
               

               
Conread position:
               
134-322
               

               
Cow position:
               
chr16:11367184-11367379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
29, 163
               

               
Conread position:
               
163-324
               

               
Cow position:
               
chr16:14281026-14281189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
113, 0
               

               
Conread position:
               
164-331
               

               
Cow position:
               
chr16:29988536-29988702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
117, 68
               

               
Conread position:
               
166-318
               

               
Cow position:
               
chr16:42644308-42644153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
180-322
               

               
Cow position:
               
chr16:22722198-22722055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
23, 5
               

               
Conread position:
               
191-322
               

               
Cow position:
               
chr16:40684087-40684218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
39-239
               

               
Cow position:
               
chr17:12753244-12753440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
18, 44
               

               
Conread position:
               
91-324
               

               
Cow position:
               
chr17:19093137-19092911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
185, 55
               

               
Conread position:
               
93-320
               

               
Cow position:
               
chr17:37440566-37440330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
95-325
               

               
Cow position:
               
chr17:4065065-4064846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
7, 21
               

               
Conread position:
               
101-321
               

               
Cow position:
               
chr17:14229055-14229278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
71, 130
               

               
Conread position:
               
101-343
               

               
Cow position:
               
chr17:12434180-12433928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
62, 29
               

               
Conread position:
               
122-326
               

               
Cow position:
               
chr17:26783-26993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
42, 28
               

               
Conread position:
               
134-309
               

               
Cow position:
               
chr17:19116908-19116724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
146-332
               

               
Cow position:
               
chr17:2000026-2000220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
23, 40
               

               
Conread position:
               
181-315
               

               
Cow position:
               
chr17:32876733-32876869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
182-323
               

               
Cow position:
               
chr17:35172584-35172727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
209-331
               

               
Cow position:
               
chr17:21340538-21340661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
17, 111
               

               
Conread position:
               
40-322
               

               
Cow position:
               
chr18:21766865-21766585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 28
               

               
Conread position:
               
64-240
               

               
Cow position:
               
chr18:53280261-53280436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
98, 19
               

               
Conread position:
               
94-315
               

               
Cow position:
               
chr18:15689501-15689718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
17, 8
               

               
Conread position:
               
102-326
               

               
Cow position:
               
chr18:37884318-37884547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
61, 167
               

               
Conread position:
               
122-315
               

               
Cow position:
               
chr18:27447785-27447985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
45, 174
               

               
Conread position:
               
134-332
               

               
Cow position:
               
chr18:3818925-3819130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
164-326
               

               
Cow position:
               
chr18:52742814-52742976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
48, 146
               

               
Conread position:
               
182-318
               

               
Cow position:
               
chr18:41073796-41073658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
89-332
               

               
Cow position:
               
chr19:38886684-38886431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
58, 11
               

               
Conread position:
               
105-323
               

               
Cow position:
               
chr19:34802165-34801938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
61, 43
               

               
Conread position:
               
130-295
               

               
Cow position:
               
chr19:32017596-32017769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
182-324
               

               
Cow position:
               
chr19:24309935-24310079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
190-325
               

               
Cow position:
               
chr19:11488888-11489025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
84, 90
               

               
Conread position:
               
210-321
               

               
Cow position:
               
chr19:18179726-18179615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
112
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
29-275
               

               
Cow position:
               
chr2:4492243-4492487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
28, 56
               

               
Conread position:
               
37-324
               

               
Cow position:
               
chr2:84275001-84274704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
20, 50
               

               
Conread position:
               
39-239
               

               
Cow position:
               
chr2:53441813-53441611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
19, 55
               

               
Conread position:
               
41-332
               

               
Cow position:
               
chr2:31868830-31869124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
10, 79
               

               
Conread position:
               
63-240
               

               
Cow position:
               
chr2:56375203-56375028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
6, 20
               

               
Conread position:
               
67-315
               

               
Cow position:
               
chr2:74381889-74381636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
22, 31
               

               
Conread position:
               
89-322
               

               
Cow position:
               
chr2:35397585-35397352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
106, 13
               

               
Conread position:
               
91-325
               

               
Cow position:
               
chr2:38154519-38154289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
71, 139
               

               
Conread position:
               
94-327
               

               
Cow position:
               
chr2:65833423-65833185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
77, 18
               

               
Conread position:
               
101-328
               

               
Cow position:
               
chr2:15645203-15645435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
61, 113
               

               
Conread position:
               
102-255
               

               
Cow position:
               
chr2:14469973-14469815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
60, 125
               

               
Conread position:
               
111-320
               

               
Cow position:
               
chr2:25075764-25075552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
57, 122
               

               
Conread position:
               
123-320
               

               
Cow position:
               
chr2:28467030-28466831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
40, 24
               

               
Conread position:
               
126-322
               

               
Cow position:
               
chr2:58552448-58552645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
155, 44
               

               
Conread position:
               
129-323
               

               
Cow position:
               
chr2:38828251-38828452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
34, 79
               

               
Conread position:
               
130-319
               

               
Cow position:
               
chr2:46776679-46776877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
174-322
               

               
Cow position:
               
chr2:22776963-22776814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
103, 85
               

               
Conread position:
               
182-315
               

               
Cow position:
               
chr2:27380291-27380426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
184-322
               

               
Cow position:
               
chr2:7913685-7913822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
38-319
               

               
Cow position:
               
chr20:12580022-12579744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 49
               

               
Conread position:
               
101-325
               

               
Cow position:
               
chr20:1237034-1236803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
63, 164
               

               
Conread position:
               
101-325
               

               
Cow position:
               
chr20:1514350-1514579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
61, 39
               

               
Conread position:
               
101-327
               

               
Cow position:
               
chr20:1880710-1880478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
43, 185
               

               
Conread position:
               
120-327
               

               
Cow position:
               
chr20:3004968-3005182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
43, 97
               

               
Conread position:
               
126-332
               

               
Cow position:
               
chr20:8479162-8478954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
37, 72
               

               
Conread position:
               
149-325
               

               
Cow position:
               
chr20:36785441-36785616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
132, 12
               

               
Conread position:
               
199-332
               

               
Cow position:
               
chr20:34987090-34986957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
77, 92
               

               
Conread position:
               
41-323
               

               
Cow position:
               
chr21:20561783-20562060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
16, 43
               

               
Conread position:
               
91-321
               

               
Cow position:
               
chr21:21637637-21637877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
56, 12
               

               
Conread position:
               
95-323
               

               
Cow position:
               
chr21:21688924-21688688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
72, 55
               

               
Conread position:
               
96-328
               

               
Cow position:
               
chr21:34775047-34774807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
101-332
               

               
Cow position:
               
chr21:771602-771376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
176, 65
               

               
Conread position:
               
115-324
               

               
Cow position:
               
chr21:27663142-27662934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
43, 142
               

               
Conread position:
               
167-333
               

               
Cow position:
               
chr21:3058837-3059005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
183-326
               

               
Cow position:
               
chr21:4120259-4120400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
39-322
               

               
Cow position:
               
chr22:12453857-12453576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
18, 45
               

               
Conread position:
               
39-323
               

               
Cow position:
               
chr22:22752857-22752573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
18, 29
               

               
Conread position:
               
62-322
               

               
Cow position:
               
chr22:43095329-43095069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
86, 32
               

               
Conread position:
               
64-332
               

               
Cow position:
               
chr22:14231547-14231284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
83, 18
               

               
Conread position:
               
101-250
               

               
Cow position:
               
chr22:20651025-20650869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
105-319
               

               
Cow position:
               
chr22:3427493-3427721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
57, 213
               

               
Conread position:
               
126-324
               

               
Cow position:
               
chr22:26897646-26897853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
36, 125
               

               
Conread position:
               
183-321
               

               
Cow position:
               
chr22:43821179-43821321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
210-323
               

               
Cow position:
               
chr22:15099507-15099392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
210-332
               

               
Cow position:
               
chr22:18933942-18934066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
65, 108
               

               
Conread position:
               
26-324
               

               
Cow position:
               
chr23:27340346-27340637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
143, 11
               

               
Conread position:
               
41-332
               

               
Cow position:
               
chr23:36434749-36434463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
16, 44
               

               
Conread position:
               
93-321
               

               
Cow position:
               
chr23:9562918-9563149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
9, 51
               

               
Conread position:
               
95-249
               

               
Cow position:
               
chr23:22280673-22280513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
101-322
               

               
Cow position:
               
chr23:20091848-20091622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
62, 45
               

               
Conread position:
               
101-322
               

               
Cow position:
               
chr23:40918376-40918598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
61, 106
               

               
Conread position:
               
101-325
               

               
Cow position:
               
chr23:26660005-26659772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
28, 49
               

               
Conread position:
               
104-324
               

               
Cow position:
               
chr23:20914362-20914137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
59, 190
               

               
Conread position:
               
120-308
               

               
Cow position:
               
chr23:27132206-27132401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
44, 118
               

               
Conread position:
               
122-321
               

               
Cow position:
               
chr23:4547613-4547406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
128-327
               

               
Cow position:
               
chr23:14853427-14853633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
41, 189
               

               
Conread position:
               
163-322
               

               
Cow position:
               
chr23:22613149-22612988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
113, 0
               

               
Conread position:
               
165-323
               

               
Cow position:
               
chr23:37437449-37437609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
185-323
               

               
Cow position:
               
chr23:9626642-9626785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
192-332
               

               
Cow position:
               
chr23:14865496-14865356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
197-326
               

               
Cow position:
               
chr23:9065525-9065393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
95-325
               

               
Cow position:
               
chr24:12005613-12005377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
67, 189
               

               
Conread position:
               
101-265
               

               
Cow position:
               
chr24:42702132-42701962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
101-323
               

               
Cow position:
               
chr24:43914431-43914660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
33, 114
               

               
Conread position:
               
102-322
               

               
Cow position:
               
chr24:36527583-36527829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
116-315
               

               
Cow position:
               
chr24:10290080-10289883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
7, 53
               

               
Conread position:
               
122-326
               

               
Cow position:
               
chr24:28773797-28773585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
124-322
               

               
Cow position:
               
chr24:30201303-30201103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
38, 114
               

               
Conread position:
               
179-321
               

               
Cow position:
               
chr24:27868594-27868458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
184-323
               

               
Cow position:
               
chr24:9145744-9145600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
59, 113
               

               
Conread position:
               
211-322
               

               
Cow position:
               
chr24:26399096-26398985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
71, 51
               

               
Conread position:
               
41-322
               

               
Cow position:
               
chr25:28673317-28673618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
16, 172
               

               
Conread position:
               
71-319
               

               
Cow position:
               
chr25:9692835-9693091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
92, 55
               

               
Conread position:
               
81-301
               

               
Cow position:
               
chr25:19977329-19977102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
21, 8
               

               
Conread position:
               
94-320
               

               
Cow position:
               
chr25:16016217-16016439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
73, 9
               

               
Conread position:
               
126-313
               

               
Cow position:
               
chr25:31843278-31843472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
219-332
               

               
Cow position:
               
chr25:15459849-15459736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
63-324
               

               
Cow position:
               
chr26:7091767-7091499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
20, 105
               

               
Conread position:
               
93-332
               

               
Cow position:
               
chr26:26578889-26579125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
70, 156
               

               
Conread position:
               
94-314
               

               
Cow position:
               
chr26:23063355-23063578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
70, 127
               

               
Conread position:
               
94-320
               

               
Cow position:
               
chr26:22602404-22602174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
69, 42
               

               
Conread position:
               
94-333
               

               
Cow position:
               
chr26:12255911-12256159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
70, 8
               

               
Conread position:
               
101-266
               

               
Cow position:
               
chr26:19720073-19720243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
101-332
               

               
Cow position:
               
chr26:4584599-4584830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
61, 72
               

               
Conread position:
               
118-325
               

               
Cow position:
               
chr26:17816600-17816815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
128-279
               

               
Cow position:
               
chr26:32399774-32399617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
134-321
               

               
Cow position:
               
chr26:26185903-26186094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
37, 186
               

               
Conread position:
               
40-325
               

               
Cow position:
               
chr27:13818306-13818590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
17, 195
               

               
Conread position:
               
63-319
               

               
Cow position:
               
chr27:15097306-15097568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
21, 87
               

               
Conread position:
               
94-323
               

               
Cow position:
               
chr27:1090517-1090287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
54, 176
               

               
Conread position:
               
94-332
               

               
Cow position:
               
chr27:10033633-10033864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
91, 52
               

               
Conread position:
               
101-323
               

               
Cow position:
               
chr27:29390084-29390307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
62, 29
               

               
Conread position:
               
102-327
               

               
Cow position:
               
chr27:7533664-7533894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
60, 126
               

               
Conread position:
               
103-325
               

               
Cow position:
               
chr27:26917860-26918083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
60, 68
               

               
Conread position:
               
105-324
               

               
Cow position:
               
chr27:21258720-21258950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
148-315
               

               
Cow position:
               
chr27:13919075-13919243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
15, 34
               

               
Conread position:
               
89-320
               

               
Cow position:
               
chr28:6357826-6357592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
73, 11
               

               
Conread position:
               
94-323
               

               
Cow position:
               
chr28:28348116-28347880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
59, 82
               

               
Conread position:
               
101-326
               

               
Cow position:
               
chr28:1550883-1551104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
66, 165
               

               
Conread position:
               
102-325
               

               
Cow position:
               
chr28:1905874-1906096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
74, 117
               

               
Conread position:
               
124-323
               

               
Cow position:
               
chr28:20721308-20721098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
25, 185
               

               
Conread position:
               
133-311
               

               
Cow position:
               
chr28:14472457-14472637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
34, 138
               

               
Conread position:
               
179-334
               

               
Cow position:
               
chr28:3722611-3722455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
100, 58
               

               
Conread position:
               
192-323
               

               
Cow position:
               
chr28:30615225-30615092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
70-322
               

               
Cow position:
               
chr29:21313911-21314175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
93, 16
               

               
Conread position:
               
90-324
               

               
Cow position:
               
chr29:22921232-22921005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
82, 131
               

               
Conread position:
               
94-321
               

               
Cow position:
               
chr29:29204064-29203842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
69, 142
               

               
Conread position:
               
101-323
               

               
Cow position:
               
chr29:17360972-17361203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
61, 141
               

               
Conread position:
               
102-319
               

               
Cow position:
               
chr29:14026087-14026320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
133-323
               

               
Cow position:
               
chr29:25974545-25974347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
163-330
               

               
Cow position:
               
chr29:34912680-34912511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
113, 155
               

               
Conread position:
               
174-321
               

               
Cow position:
               
chr29:37446720-37446869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
107, 0
               

               
Conread position:
               
41-323
               

               
Cow position:
               
chr3:34181991-34181709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
16, 44
               

               
Conread position:
               
94-323
               

               
Cow position:
               
chr3:10622393-10622159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
68, 207
               

               
Conread position:
               
101-319
               

               
Cow position:
               
chr3:49481580-49481804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
75, 35
               

               
Conread position:
               
120-318
               

               
Cow position:
               
chr3:81860710-81860503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
122-327
               

               
Cow position:
               
chr3:13598490-13598709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
40, 185
               

               
Conread position:
               
133-323
               

               
Cow position:
               
chr3:31580814-31581010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
36, 83
               

               
Conread position:
               
134-318
               

               
Cow position:
               
chr3:20025938-20025747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
160-324
               

               
Cow position:
               
chr3:84313910-84314075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
59, 69
               

               
Conread position:
               
182-324
               

               
Cow position:
               
chr3:79360238-79360098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
98, 63
               

               
Conread position:
               
192-323
               

               
Cow position:
               
chr3:17589045-17588917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
89, 52
               

               
Conread position:
               
223-325
               

               
Cow position:
               
chr3:84223499-84223395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
105
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
39-322
               

               
Cow position:
               
chr4:7434599-7434318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
18, 46
               

               
Conread position:
               
64-321
               

               
Cow position:
               
chr4:23098264-23098002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
36, 22
               

               
Conread position:
               
94-325
               

               
Cow position:
               
chr4:61476991-61477230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
100-268
               

               
Cow position:
               
chr4:27476332-27476159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
62, 163
               

               
Conread position:
               
101-321
               

               
Cow position:
               
chr4:51928798-51929029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
101-332
               

               
Cow position:
               
chr4:61060521-61060287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
63, 147
               

               
Conread position:
               
103-319
               

               
Cow position:
               
chr4:50554237-50554456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
59, 118
               

               
Conread position:
               
163-323
               

               
Cow position:
               
chr4:53355766-53355925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
111, 47
               

               
Conread position:
               
170-326
               

               
Cow position:
               
chr4:12043918-12044075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
110, 149
               

               
Conread position:
               
196-326
               

               
Cow position:
               
chr4:34572805-34572674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
80, 121
               

               
Conread position:
               
31-323
               

               
Cow position:
               
chr5:29425369-29425077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
26, 54
               

               
Conread position:
               
37-325
               

               
Cow position:
               
chr5:4748472-4748196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
20, 32
               

               
Conread position:
               
40-324
               

               
Cow position:
               
chr5:7280170-7280473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
17, 195
               

               
Conread position:
               
64-270
               

               
Cow position:
               
chr5:16174075-16173870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
107, 37
               

               
Conread position:
               
73-313
               

               
Cow position:
               
chr5:55756040-55755797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
16, 175
               

               
Conread position:
               
85-333
               

               
Cow position:
               
chr5:57114973-57115228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
78, 183
               

               
Conread position:
               
87-320
               

               
Cow position:
               
chr5:40746243-40746475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
74, 13
               

               
Conread position:
               
94-326
               

               
Cow position:
               
chr5:23452615-23452839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
68, 116
               

               
Conread position:
               
94-331
               

               
Cow position:
               
chr5:7920777-7920531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
78, 39
               

               
Conread position:
               
96-323
               

               
Cow position:
               
chr5:54738249-54738483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
66, 160
               

               
Conread position:
               
100-271
               

               
Cow position:
               
chr5:32989765-32989932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
101-323
               

               
Cow position:
               
chr5:16272999-16273226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
103-318
               

               
Cow position:
               
chr5:37915464-37915687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
114-324
               

               
Cow position:
               
chr5:64461079-64460868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
53, 141
               

               
Conread position:
               
126-323
               

               
Cow position:
               
chr5:35457120-35457323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
128-334
               

               
Cow position:
               
chr5:68632501-68632305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
146, 34
               

               
Conread position:
               
146-323
               

               
Cow position:
               
chr5:58033368-58033551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
16, 99
               

               
Conread position:
               
151-327
               

               
Cow position:
               
chr5:68951998-68952177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
125, 0
               

               
Conread position:
               
161-327
               

               
Cow position:
               
chr5:33698352-33698185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
118, 158
               

               
Conread position:
               
164-328
               

               
Cow position:
               
chr5:29066595-29066761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
21, 152
               

               
Conread position:
               
182-332
               

               
Cow position:
               
chr5:36854686-36854535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
92, 138
               

               
Conread position:
               
69-324
               

               
Cow position:
               
chr6:37510513-37510766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
21, 53
               

               
Conread position:
               
95-327
               

               
Cow position:
               
chr6:22957513-22957754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
9, 125
               

               
Conread position:
               
99-323
               

               
Cow position:
               
chr6:4494324-4494091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
13, 207
               

               
Conread position:
               
100-318
               

               
Cow position:
               
chr6:63080355-63080585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
101-327
               

               
Cow position:
               
chr6:15693682-15693448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
122-322
               

               
Cow position:
               
chr6:49629605-49629395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
122-324
               

               
Cow position:
               
chr6:43598557-43598768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
20, 136
               

               
Conread position:
               
122-325
               

               
Cow position:
               
chr6:28529075-28528863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
122-330
               

               
Cow position:
               
chr6:59655351-59655136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
41, 199
               

               
Conread position:
               
126-324
               

               
Cow position:
               
chr6:59095620-59095824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
36, 82
               

               
Conread position:
               
148-325
               

               
Cow position:
               
chr6:25022578-25022395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
15, 164
               

               
Conread position:
               
164-323
               

               
Cow position:
               
chr6:1572806-1572966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
113, 57
               

               
Conread position:
               
182-323
               

               
Cow position:
               
chr6:23553572-23553429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
197-331
               

               
Cow position:
               
chr6:60224063-60223932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
228-324
               

               
Cow position:
               
chr6:47617689-47617788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
100
               

               
Alignm identity:
               
85
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
101-323
               

               
Cow position:
               
chr7:43944414-43944187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
67, 171
               

               
Conread position:
               
101-332
               

               
Cow position:
               
chr7:32380215-32379986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
176, 67
               

               
Conread position:
               
101-332
               

               
Cow position:
               
chr7:33380875-33381111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
59, 9
               

               
Conread position:
               
103-321
               

               
Cow position:
               
chr7:62593349-62593127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
60, 23
               

               
Conread position:
               
103-324
               

               
Cow position:
               
chr7:45227838-45227601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
60, 225
               

               
Conread position:
               
144-328
               

               
Cow position:
               
chr7:29464029-29464220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
19, 181
               

               
Conread position:
               
174-325
               

               
Cow position:
               
chr7:47673815-47673657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
83, 151
               

               
Conread position:
               
1-333
               

               
Cow position:
               
chr8:26096022-26096361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 207
               

               
Conread position:
               
64-322
               

               
Cow position:
               
chr8:13250198-13250461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
99, 38
               

               
Conread position:
               
94-323
               

               
Cow position:
               
chr8:33347742-33347976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
94-323
               

               
Cow position:
               
chr8:33998185-33998414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
68, 140
               

               
Conread position:
               
94-393
               

               
Cow position:
               
chr8:40767607-40767308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
69, 91
               

               
Conread position:
               
101-314
               

               
Cow position:
               
chr8:26579611-26579391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
62, 196
               

               
Conread position:
               
101-323
               

               
Cow position:
               
chr8:4894183-4893956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
66, 76
               

               
Conread position:
               
116-324
               

               
Cow position:
               
chr8:1676456-1676246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
161, 0
               

               
Conread position:
               
122-323
               

               
Cow position:
               
chr8:1676802-1677010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
41, 26
               

               
Conread position:
               
122-323
               

               
Cow position:
               
chr8:50644809-50644604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
40, 175
               

               
Conread position:
               
122-323
               

               
Cow position:
               
chr8:56599489-56599287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
42, 166
               

               
Conread position:
               
122-326
               

               
Cow position:
               
chr8:59087301-59087506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
46, 85
               

               
Conread position:
               
123-363
               

               
Cow position:
               
chr8:44836252-44836008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
40, 85
               

               
Conread position:
               
135-328
               

               
Cow position:
               
chr8:55887904-55887711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
28, 145
               

               
Conread position:
               
172-324
               

               
Cow position:
               
chr8:47210151-47209998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
104, 7
               

               
Conread position:
               
194-319
               

               
Cow position:
               
chr8:36144719-36144591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
311-766
               

               
Cow position:
               
chr8:26096376-26096832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 158
               

               
Conread position:
               
29-265
               

               
Cow position:
               
chr9:43819972-43820211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
5, 58
               

               
Conread position:
               
35-323
               

               
Cow position:
               
chr9:21925301-21925602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
22, 180
               

               
Conread position:
               
41-322
               

               
Cow position:
               
chr9:27453529-27453238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
42-327
               

               
Cow position:
               
chr9:35442425-35442144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
122, 42
               

               
Conread position:
               
64-322
               

               
Cow position:
               
chr9:23989183-23989442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
105, 59
               

               
Conread position:
               
70-332
               

               
Cow position:
               
chr9:45311028-45311295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
31, 12
               

               
Conread position:
               
93-324
               

               
Cow position:
               
chr9:41287967-41287728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
71, 224
               

               
Conread position:
               
94-321
               

               
Cow position:
               
chr9:10790753-10790529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
74, 67
               

               
Conread position:
               
94-323
               

               
Cow position:
               
chr9:15236371-15236134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
8, 112
               

               
Conread position:
               
100-327
               

               
Cow position:
               
chr9:28891452-28891687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
101-321
               

               
Cow position:
               
chr9:19598038-19598276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
101-323
               

               
Cow position:
               
chr9:31525079-31524848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
101-325
               

               
Cow position:
               
chr9:31501260-31501051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
101-372
               

               
Cow position:
               
chr9:93140-93416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
89, 48
               

               
Conread position:
               
103-319
               

               
Cow position:
               
chr9:30333274-30333051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
16, 45
               

               
Conread position:
               
122-323
               

               
Cow position:
               
chr9:52423414-52423620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
25, 112
               

               
Conread position:
               
133-332
               

               
Cow position:
               
chr9:23937453-23937656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
34, 140
               

               
Conread position:
               
134-321
               

               
Cow position:
               
chr9:34548868-34549064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
26, 172
               

               
Conread position:
               
163-322
               

               
Cow position:
               
chr9:45427714-45427555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
163-323
               

               
Cow position:
               
chr9:10787611-10787453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
135, 0
               

               
Conread position:
               
188-324
               

               
Cow position:
               
chr9:50640199-50640061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
40-314
               

               
Cow position:
               
chrX:16953345-16953607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
17, 43
               

               
Conread position:
               
41-321
               

               
Cow position:
               
chrX:1076142-1075847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
16, 53
               

               
Conread position:
               
60-322
               

               
Cow position:
               
chrX:1091076-1091347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
27, 54
               

               
Conread position:
               
94-320
               

               
Cow position:
               
chrX:12716870-12717102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
73, 12
               

               
Conread position:
               
94-322
               

               
Cow position:
               
chrX:22273663-22273884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
70, 16
               

               
Conread position:
               
101-322
               

               
Cow position:
               
chrX:30728487-30728259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
62, 220
               

               
Conread position:
               
101-324
               

               
Cow position:
               
chrX:33787541-33787317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
62, 145
               

               
Conread position:
               
102-326
               

               
Cow position:
               
chrX:3796744-3796506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
144-319
               

               
Cow position:
               
chrX:42552441-42552619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
20, 68
               

               
Conread position:
               
148-322
               

               
Cow position:
               
chrX:32778857-32778675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
160-326
               

               
Cow position:
               
chrX:35056763-35056931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
75, 0