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Cow genome map

           
Conread name:
           
Thy1-THY010093A08
        

               
Conread position:
               
1-327
               

               
Cow position:
               
chr10:25645739-25645404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
38, 144
               

               
Conread position:
               
1-337
               

               
Cow position:
               
chr10:7880759-7880408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
58, 90
               

               
Conread position:
               
1-347
               

               
Cow position:
               
chr10:29185425-29185776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
56, 147
               

               
Conread position:
               
5-348
               

               
Cow position:
               
chr10:53395371-53395020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
89, 48
               

               
Conread position:
               
8-348
               

               
Cow position:
               
chr10:58705978-58705630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
47, 124
               

               
Conread position:
               
17-348
               

               
Cow position:
               
chr10:59365473-59365803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
80, 41
               

               
Conread position:
               
24-337
               

               
Cow position:
               
chr10:48028208-48028524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
77, 51
               

               
Conread position:
               
24-348
               

               
Cow position:
               
chr10:52609587-52609918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
35, 126
               

               
Conread position:
               
27-337
               

               
Cow position:
               
chr10:7892086-7892401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
30, 67
               

               
Conread position:
               
90-342
               

               
Cow position:
               
chr10:57162770-57162526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
37, 30
               

               
Conread position:
               
95-335
               

               
Cow position:
               
chr10:35476892-35476648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
114, 44
               

               
Conread position:
               
100-324
               

               
Cow position:
               
chr10:16544326-16544105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
97, 40
               

               
Conread position:
               
110-333
               

               
Cow position:
               
chr10:861243-861017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
13, 29
               

               
Conread position:
               
116-337
               

               
Cow position:
               
chr10:27342252-27342471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
73, 97
               

               
Conread position:
               
137-336
               

               
Cow position:
               
chr10:39647250-39647054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
118, 63
               

               
Conread position:
               
1-337
               

               
Cow position:
               
chr11:31893552-31893914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
43, 153
               

               
Conread position:
               
1-337
               

               
Cow position:
               
chr11:52588977-52588642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
98, 58
               

               
Conread position:
               
1-342
               

               
Cow position:
               
chr11:15681219-15680866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
54, 37
               

               
Conread position:
               
1-348
               

               
Cow position:
               
chr11:16296611-16296262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
52, 104
               

               
Conread position:
               
1-348
               

               
Cow position:
               
chr11:22882884-22883245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
53, 133
               

               
Conread position:
               
1-348
               

               
Cow position:
               
chr11:26656249-26656606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
53, 153
               

               
Conread position:
               
2-348
               

               
Cow position:
               
chr11:71582852-71583204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
50, 141
               

               
Conread position:
               
6-303
               

               
Cow position:
               
chr11:12119059-12119357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
91, 18
               

               
Conread position:
               
7-332
               

               
Cow position:
               
chr11:8582222-8581877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
22, 131
               

               
Conread position:
               
13-350
               

               
Cow position:
               
chr11:59801681-59802025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
42, 137
               

               
Conread position:
               
18-348
               

               
Cow position:
               
chr11:84213003-84212664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
36, 123
               

               
Conread position:
               
21-348
               

               
Cow position:
               
chr11:13510542-13510863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
14, 124
               

               
Conread position:
               
28-348
               

               
Cow position:
               
chr11:53518015-53518351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
27, 128
               

               
Conread position:
               
29-334
               

               
Cow position:
               
chr11:50876878-50877196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
26, 116
               

               
Conread position:
               
29-337
               

               
Cow position:
               
chr11:76243862-76244158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
23, 58
               

               
Conread position:
               
54-348
               

               
Cow position:
               
chr11:15261294-15261596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
49, 96
               

               
Conread position:
               
57-348
               

               
Cow position:
               
chr11:20496142-20495846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
42, 89
               

               
Conread position:
               
100-348
               

               
Cow position:
               
chr11:54437924-54437675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
100, 9
               

               
Conread position:
               
175-348
               

               
Cow position:
               
chr11:54004839-54004665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
26, 36
               

               
Conread position:
               
1-348
               

               
Cow position:
               
chr12:25531738-25532099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
54, 148
               

               
Conread position:
               
27-348
               

               
Cow position:
               
chr12:40172246-40171926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
23, 123
               

               
Conread position:
               
34-348
               

               
Cow position:
               
chr12:4662674-4662356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
52, 23
               

               
Conread position:
               
50-295
               

               
Cow position:
               
chr12:35303399-35303652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
50, 91
               

               
Conread position:
               
100-342
               

               
Cow position:
               
chr12:22130683-22130437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
96, 39
               

               
Conread position:
               
1-348
               

               
Cow position:
               
chr13:30081121-30080761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
54, 151
               

               
Conread position:
               
1-348
               

               
Cow position:
               
chr13:47473199-47472849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
54, 147
               

               
Conread position:
               
4-348
               

               
Cow position:
               
chr13:21856053-21856404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
51, 23
               

               
Conread position:
               
4-348
               

               
Cow position:
               
chr13:27256417-27256774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
44, 37
               

               
Conread position:
               
7-347
               

               
Cow position:
               
chr13:492670-493014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
49, 7
               

               
Conread position:
               
17-348
               

               
Cow position:
               
chr13:12685319-12684970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
33, 137
               

               
Conread position:
               
24-337
               

               
Cow position:
               
chr13:52775204-52774894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
172, 40
               

               
Conread position:
               
49-337
               

               
Cow position:
               
chr13:14550677-14550402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
107, 40
               

               
Conread position:
               
50-337
               

               
Cow position:
               
chr13:13243685-13243974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
140, 87
               

               
Conread position:
               
53-349
               

               
Cow position:
               
chr13:40630922-40631225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
46, 99
               

               
Conread position:
               
62-348
               

               
Cow position:
               
chr13:2900187-2899898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
41, 79
               

               
Conread position:
               
93-348
               

               
Cow position:
               
chr13:33695637-33695888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
121, 46
               

               
Conread position:
               
100-344
               

               
Cow position:
               
chr13:45143067-45142820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
100, 44
               

               
Conread position:
               
113-348
               

               
Cow position:
               
chr13:19113302-19113064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
21, 27
               

               
Conread position:
               
1-322
               

               
Cow position:
               
chr14:34193926-34193601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
52, 35
               

               
Conread position:
               
1-348
               

               
Cow position:
               
chr14:19271964-19271617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
54, 134
               

               
Conread position:
               
1-348
               

               
Cow position:
               
chr14:41480395-41480746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
54, 108
               

               
Conread position:
               
4-271
               

               
Cow position:
               
chr14:41096011-41095737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
52, 13
               

               
Conread position:
               
27-348
               

               
Cow position:
               
chr14:2859449-2859771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
28, 46
               

               
Conread position:
               
28-297
               

               
Cow position:
               
chr14:18241983-18242255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
69, 28
               

               
Conread position:
               
1-342
               

               
Cow position:
               
chr15:37731245-37731596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
56, 29
               

               
Conread position:
               
1-348
               

               
Cow position:
               
chr15:7068407-7068767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
54, 14
               

               
Conread position:
               
1-348
               

               
Cow position:
               
chr15:9973898-9974248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
42, 156
               

               
Conread position:
               
1-348
               

               
Cow position:
               
chr15:22728005-22728365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
48, 14
               

               
Conread position:
               
1-348
               

               
Cow position:
               
chr15:32907409-32907045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
46, 152
               

               
Conread position:
               
1-350
               

               
Cow position:
               
chr15:22564718-22564360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
52, 149
               

               
Conread position:
               
6-347
               

               
Cow position:
               
chr15:5883732-5884088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
51, 126
               

               
Conread position:
               
7-340
               

               
Cow position:
               
chr15:703823-703485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
46, 81
               

               
Conread position:
               
7-351
               

               
Cow position:
               
chr15:9720517-9720870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
48, 84
               

               
Conread position:
               
8-348
               

               
Cow position:
               
chr15:41402460-41402121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
47, 146
               

               
Conread position:
               
9-348
               

               
Cow position:
               
chr15:15171153-15171505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
28, 20
               

               
Conread position:
               
10-348
               

               
Cow position:
               
chr15:24963460-24963810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
15, 155
               

               
Conread position:
               
24-337
               

               
Cow position:
               
chr15:13870433-13870759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
31, 127
               

               
Conread position:
               
49-349
               

               
Cow position:
               
chr15:23498883-23499188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
148, 8
               

               
Conread position:
               
54-348
               

               
Cow position:
               
chr15:26315095-26314796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
47, 91
               

               
Conread position:
               
54-348
               

               
Cow position:
               
chr15:48798916-48798616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
45, 21
               

               
Conread position:
               
61-348
               

               
Cow position:
               
chr15:8360879-8361169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
38, 83
               

               
Conread position:
               
75-354
               

               
Cow position:
               
chr15:41773240-41772970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
119, 11
               

               
Conread position:
               
100-344
               

               
Cow position:
               
chr15:29982416-29982174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
97, 38
               

               
Conread position:
               
1-348
               

               
Cow position:
               
chr16:14384205-14384575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
50, 41
               

               
Conread position:
               
1-348
               

               
Cow position:
               
chr16:17294690-17295043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
48, 100
               

               
Conread position:
               
1-348
               

               
Cow position:
               
chr16:20867233-20867598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
53, 191
               

               
Conread position:
               
4-350
               

               
Cow position:
               
chr16:52403476-52403828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
55, 148
               

               
Conread position:
               
4-351
               

               
Cow position:
               
chr16:23732499-23732156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
43, 97
               

               
Conread position:
               
7-348
               

               
Cow position:
               
chr16:24563790-24563433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
48, 17
               

               
Conread position:
               
7-348
               

               
Cow position:
               
chr16:42409657-42409301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
48, 126
               

               
Conread position:
               
19-329
               

               
Cow position:
               
chr16:4597851-4598175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
24-291
               

               
Cow position:
               
chr16:16586710-16586996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
31, 111
               

               
Conread position:
               
27-348
               

               
Cow position:
               
chr16:22579674-22579338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
28, 126
               

               
Conread position:
               
28-348
               

               
Cow position:
               
chr16:34211337-34211670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
30, 127
               

               
Conread position:
               
34-336
               

               
Cow position:
               
chr16:10625545-10625232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
49, 19
               

               
Conread position:
               
44-337
               

               
Cow position:
               
chr16:19305998-19305696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
53, 104
               

               
Conread position:
               
50-348
               

               
Cow position:
               
chr16:43798649-43798347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
49, 18
               

               
Conread position:
               
100-335
               

               
Cow position:
               
chr16:49974016-49973782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
51, 39
               

               
Conread position:
               
166-348
               

               
Cow position:
               
chr16:15945751-15945566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
1-190
               

               
Cow position:
               
chr17:21183821-21183619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
1-341
               

               
Cow position:
               
chr17:18627986-18628339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
54, 12
               

               
Conread position:
               
1-341
               

               
Cow position:
               
chr17:20700394-20700042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
53, 82
               

               
Conread position:
               
1-348
               

               
Cow position:
               
chr17:30753292-30752930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
51, 155
               

               
Conread position:
               
1-349
               

               
Cow position:
               
chr17:28242288-28242642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
54, 118
               

               
Conread position:
               
24-328
               

               
Cow position:
               
chr17:42283813-42283510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
31, 66
               

               
Conread position:
               
28-342
               

               
Cow position:
               
chr17:32306633-32306304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
27, 124
               

               
Conread position:
               
100-348
               

               
Cow position:
               
chr17:33198371-33198122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
98, 56
               

               
Conread position:
               
1-321
               

               
Cow position:
               
chr18:40220690-40221014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
95, 144
               

               
Conread position:
               
1-342
               

               
Cow position:
               
chr18:14456423-14456769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
54, 108
               

               
Conread position:
               
1-348
               

               
Cow position:
               
chr18:36819839-36819473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
39, 153
               

               
Conread position:
               
1-351
               

               
Cow position:
               
chr18:24711984-24711631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
54, 15
               

               
Conread position:
               
4-343
               

               
Cow position:
               
chr18:48309994-48309638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
45, 149
               

               
Conread position:
               
7-326
               

               
Cow position:
               
chr18:8068057-8067725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
24, 136
               

               
Conread position:
               
7-347
               

               
Cow position:
               
chr18:43144664-43144309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
48, 150
               

               
Conread position:
               
31-350
               

               
Cow position:
               
chr18:36378966-36378638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
21, 123
               

               
Conread position:
               
54-284
               

               
Cow position:
               
chr18:17356147-17356382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
43, 91
               

               
Conread position:
               
100-336
               

               
Cow position:
               
chr18:24006620-24006856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
100, 30
               

               
Conread position:
               
137-348
               

               
Cow position:
               
chr18:15861718-15861930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
63, 91
               

               
Conread position:
               
1-348
               

               
Cow position:
               
chr19:10223573-10223938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
48, 153
               

               
Conread position:
               
1-348
               

               
Cow position:
               
chr19:18368542-18368182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
48, 154
               

               
Conread position:
               
1-348
               

               
Cow position:
               
chr19:32416766-32417110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
100, 58
               

               
Conread position:
               
7-345
               

               
Cow position:
               
chr19:29018457-29018116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
44, 99
               

               
Conread position:
               
8-348
               

               
Cow position:
               
chr19:18951970-18952320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
52, 145
               

               
Conread position:
               
8-348
               

               
Cow position:
               
chr19:55554275-55554624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
38, 141
               

               
Conread position:
               
10-337
               

               
Cow position:
               
chr19:5482197-5481859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
45, 153
               

               
Conread position:
               
16-337
               

               
Cow position:
               
chr19:41990714-41990390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
51, 129
               

               
Conread position:
               
21-348
               

               
Cow position:
               
chr19:16135889-16135545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
34, 129
               

               
Conread position:
               
21-350
               

               
Cow position:
               
chr19:21143921-21144255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
33, 14
               

               
Conread position:
               
24-337
               

               
Cow position:
               
chr19:28805061-28805394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
29, 136
               

               
Conread position:
               
27-317
               

               
Cow position:
               
chr19:16981876-16981588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
28, 84
               

               
Conread position:
               
27-348
               

               
Cow position:
               
chr19:47043944-47043611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
28, 40
               

               
Conread position:
               
32-348
               

               
Cow position:
               
chr19:14225604-14225930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
23, 111
               

               
Conread position:
               
49-348
               

               
Cow position:
               
chr19:2287707-2287409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
53, 95
               

               
Conread position:
               
50-342
               

               
Cow position:
               
chr19:4995531-4995235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
50, 97
               

               
Conread position:
               
54-324
               

               
Cow position:
               
chr19:36009379-36009660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
42, 93
               

               
Conread position:
               
54-347
               

               
Cow position:
               
chr19:36706983-36706684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
43, 86
               

               
Conread position:
               
99-348
               

               
Cow position:
               
chr19:49317339-49317085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
51, 40
               

               
Conread position:
               
100-334
               

               
Cow position:
               
chr19:4594068-4594305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
97, 138
               

               
Conread position:
               
102-348
               

               
Cow position:
               
chr19:16097255-16097010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
95, 35
               

               
Conread position:
               
1-327
               

               
Cow position:
               
chr2:36392546-36392889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
58, 146
               

               
Conread position:
               
1-332
               

               
Cow position:
               
chr2:22007305-22006961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
52, 154
               

               
Conread position:
               
1-334
               

               
Cow position:
               
chr2:73463670-73463326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
73, 137
               

               
Conread position:
               
1-340
               

               
Cow position:
               
chr2:18936052-18936398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
92, 44
               

               
Conread position:
               
1-342
               

               
Cow position:
               
chr2:77369708-77370062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
53, 160
               

               
Conread position:
               
1-346
               

               
Cow position:
               
chr2:42765290-42764950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
46, 102
               

               
Conread position:
               
1-348
               

               
Cow position:
               
chr2:545471-545119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
56, 138
               

               
Conread position:
               
1-386
               

               
Cow position:
               
chr2:53405637-53406022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
45, 12
               

               
Conread position:
               
3-348
               

               
Cow position:
               
chr2:59697637-59697983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
54, 13
               

               
Conread position:
               
4-334
               

               
Cow position:
               
chr2:27609739-27609392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
54, 148
               

               
Conread position:
               
5-338
               

               
Cow position:
               
chr2:39076340-39076680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
47, 141
               

               
Conread position:
               
7-348
               

               
Cow position:
               
chr2:82472635-82472298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
48, 139
               

               
Conread position:
               
7-352
               

               
Cow position:
               
chr2:36572248-36572609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
47, 10
               

               
Conread position:
               
32-348
               

               
Cow position:
               
chr2:3870188-3870521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
23, 122
               

               
Conread position:
               
32-350
               

               
Cow position:
               
chr2:21914034-21914373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
26, 119
               

               
Conread position:
               
33-222
               

               
Cow position:
               
chr2:21311203-21311005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
24, 118
               

               
Conread position:
               
33-348
               

               
Cow position:
               
chr2:76350323-76350003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
59, 24
               

               
Conread position:
               
39-365
               

               
Cow position:
               
chr2:42467621-42467272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
60, 222
               

               
Conread position:
               
50-340
               

               
Cow position:
               
chr2:14724133-14723842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
49, 96
               

               
Conread position:
               
57-332
               

               
Cow position:
               
chr2:15500011-15499756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
123, 34
               

               
Conread position:
               
83-341
               

               
Cow position:
               
chr2:16920853-16921113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
113, 54
               

               
Conread position:
               
100-336
               

               
Cow position:
               
chr2:22668952-22668715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
97, 30
               

               
Conread position:
               
101-348
               

               
Cow position:
               
chr2:14195841-14196090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
99, 42
               

               
Conread position:
               
101-348
               

               
Cow position:
               
chr2:76305812-76306060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
89, 36
               

               
Conread position:
               
1-348
               

               
Cow position:
               
chr20:2178354-2177994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
53, 149
               

               
Conread position:
               
1-350
               

               
Cow position:
               
chr20:3160055-3160416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
53, 148
               

               
Conread position:
               
7-347
               

               
Cow position:
               
chr20:4853707-4853353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
16, 146
               

               
Conread position:
               
24-282
               

               
Cow position:
               
chr20:701980-701709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
31, 126
               

               
Conread position:
               
50-350
               

               
Cow position:
               
chr20:13710792-13710484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
25, 117
               

               
Conread position:
               
100-344
               

               
Cow position:
               
chr20:4883972-4883736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
190, 39
               

               
Conread position:
               
1-329
               

               
Cow position:
               
chr21:29634375-29634711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
28, 154
               

               
Conread position:
               
2-333
               

               
Cow position:
               
chr21:15468520-15468182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
53, 25
               

               
Conread position:
               
4-271
               

               
Cow position:
               
chr21:12466140-12466414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
51, 144
               

               
Conread position:
               
15-269
               

               
Cow position:
               
chr21:30313706-30313966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
40, 56
               

               
Conread position:
               
21-350
               

               
Cow position:
               
chr21:14726040-14726377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
37, 56
               

               
Conread position:
               
28-324
               

               
Cow position:
               
chr21:36620337-36620044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
173, 32
               

               
Conread position:
               
85-348
               

               
Cow position:
               
chr21:4468945-4469213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
11, 60
               

               
Conread position:
               
1-349
               

               
Cow position:
               
chr22:32432770-32433133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
54, 151
               

               
Conread position:
               
1-350
               

               
Cow position:
               
chr22:9695942-9696303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
99, 144
               

               
Conread position:
               
1-368
               

               
Cow position:
               
chr22:7361314-7361694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
75, 151
               

               
Conread position:
               
4-227
               

               
Cow position:
               
chr22:43553285-43553060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
93, 53
               

               
Conread position:
               
4-324
               

               
Cow position:
               
chr22:34085480-34085139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
14, 153
               

               
Conread position:
               
7-336
               

               
Cow position:
               
chr22:7238217-7237875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 142
               

               
Conread position:
               
16-285
               

               
Cow position:
               
chr22:25449963-25449678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
7, 137
               

               
Conread position:
               
24-348
               

               
Cow position:
               
chr22:40358391-40358718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
31, 125
               

               
Conread position:
               
34-344
               

               
Cow position:
               
chr22:27486541-27486858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
21, 115
               

               
Conread position:
               
50-324
               

               
Cow position:
               
chr22:8243282-8243563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
50, 92
               

               
Conread position:
               
55-348
               

               
Cow position:
               
chr22:7896257-7896547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
141, 13
               

               
Conread position:
               
101-342
               

               
Cow position:
               
chr22:39311301-39311063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
113, 22
               

               
Conread position:
               
1-220
               

               
Cow position:
               
chr23:15885014-15884788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
53, 150
               

               
Conread position:
               
1-228
               

               
Cow position:
               
chr23:27181263-27181022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
53, 152
               

               
Conread position:
               
1-334
               

               
Cow position:
               
chr23:10960887-10961219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
53, 145
               

               
Conread position:
               
1-348
               

               
Cow position:
               
chr23:10414119-10413764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
53, 86
               

               
Conread position:
               
1-350
               

               
Cow position:
               
chr23:8275915-8275555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
54, 75
               

               
Conread position:
               
27-344
               

               
Cow position:
               
chr23:37085874-37085544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
22, 122
               

               
Conread position:
               
31-289
               

               
Cow position:
               
chr23:8388154-8387892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
21, 31
               

               
Conread position:
               
33-348
               

               
Cow position:
               
chr23:37640037-37639712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
17, 154
               

               
Conread position:
               
100-346
               

               
Cow position:
               
chr23:3908347-3908104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
109, 35
               

               
Conread position:
               
108-347
               

               
Cow position:
               
chr23:29660591-29660834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
89, 31
               

               
Conread position:
               
1-311
               

               
Cow position:
               
chr24:23715845-23715532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
53, 138
               

               
Conread position:
               
1-365
               

               
Cow position:
               
chr24:5891767-5891392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
28, 14
               

               
Conread position:
               
7-350
               

               
Cow position:
               
chr24:36039626-36039271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
48, 143
               

               
Conread position:
               
27-348
               

               
Cow position:
               
chr24:18846729-18847054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
22, 124
               

               
Conread position:
               
50-339
               

               
Cow position:
               
chr24:36771398-36771695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
45, 90
               

               
Conread position:
               
1-348
               

               
Cow position:
               
chr25:24653139-24653492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
54, 80
               

               
Conread position:
               
9-329
               

               
Cow position:
               
chr25:28213528-28213847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
41, 91
               

               
Conread position:
               
9-348
               

               
Cow position:
               
chr25:41306695-41306359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
88, 52
               

               
Conread position:
               
9-348
               

               
Cow position:
               
chr25:41409948-41410284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
88, 52
               

               
Conread position:
               
10-348
               

               
Cow position:
               
chr25:19585616-19585271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
50, 142
               

               
Conread position:
               
16-348
               

               
Cow position:
               
chr25:10416733-10417079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
5, 129
               

               
Conread position:
               
18-348
               

               
Cow position:
               
chr25:30374354-30374690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
83, 128
               

               
Conread position:
               
24-348
               

               
Cow position:
               
chr25:10306590-10306910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
31, 78
               

               
Conread position:
               
33-348
               

               
Cow position:
               
chr25:28263290-28263616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
19, 132
               

               
Conread position:
               
38-348
               

               
Cow position:
               
chr25:7516948-7516623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
17, 114
               

               
Conread position:
               
100-293
               

               
Cow position:
               
chr25:19376527-19376723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
111, 43
               

               
Conread position:
               
100-350
               

               
Cow position:
               
chr25:13966145-13966404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
1-283
               

               
Cow position:
               
chr26:12032892-12032594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
10, 133
               

               
Conread position:
               
1-348
               

               
Cow position:
               
chr26:6502181-6502524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
56, 146
               

               
Conread position:
               
1-348
               

               
Cow position:
               
chr26:11959912-11959558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
54, 147
               

               
Conread position:
               
1-348
               

               
Cow position:
               
chr26:22351878-22351520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
54, 153
               

               
Conread position:
               
1-365
               

               
Cow position:
               
chr26:13521802-13521436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
98, 61
               

               
Conread position:
               
3-348
               

               
Cow position:
               
chr26:15440223-15439870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
52, 84
               

               
Conread position:
               
6-298
               

               
Cow position:
               
chr26:25207487-25207179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
47, 204
               

               
Conread position:
               
8-245
               

               
Cow position:
               
chr26:17538946-17539200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
47, 210
               

               
Conread position:
               
8-342
               

               
Cow position:
               
chr26:19640073-19640416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
31, 21
               

               
Conread position:
               
17-305
               

               
Cow position:
               
chr26:8524454-8524736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
173, 6
               

               
Conread position:
               
27-341
               

               
Cow position:
               
chr26:28780411-28780729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
30, 116
               

               
Conread position:
               
56-348
               

               
Cow position:
               
chr26:25086196-25085892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
22, 93
               

               
Conread position:
               
70-350
               

               
Cow position:
               
chr26:8229768-8230053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
29, 76
               

               
Conread position:
               
82-347
               

               
Cow position:
               
chr26:17651624-17651889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
114, 41
               

               
Conread position:
               
94-337
               

               
Cow position:
               
chr26:19014507-19014752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
105, 45
               

               
Conread position:
               
109-348
               

               
Cow position:
               
chr26:24543493-24543250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
91, 34
               

               
Conread position:
               
1-342
               

               
Cow position:
               
chr27:11272842-11272497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
60, 79
               

               
Conread position:
               
1-348
               

               
Cow position:
               
chr27:15424238-15423879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
55, 150
               

               
Conread position:
               
7-333
               

               
Cow position:
               
chr27:31343080-31342744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
48, 136
               

               
Conread position:
               
10-348
               

               
Cow position:
               
chr27:9436732-9437089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
21, 146
               

               
Conread position:
               
45-323
               

               
Cow position:
               
chr27:14870257-14870546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
56, 12
               

               
Conread position:
               
50-348
               

               
Cow position:
               
chr27:15761316-15761023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
159, 37
               

               
Conread position:
               
101-348
               

               
Cow position:
               
chr27:24130743-24130499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
99, 36
               

               
Conread position:
               
114-342
               

               
Cow position:
               
chr27:17898895-17899128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
86, 25
               

               
Conread position:
               
1-348
               

               
Cow position:
               
chr28:676881-676527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
57, 151
               

               
Conread position:
               
1-348
               

               
Cow position:
               
chr28:1571058-1571413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
53, 146
               

               
Conread position:
               
1-348
               

               
Cow position:
               
chr28:4023724-4024073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
52, 151
               

               
Conread position:
               
1-348
               

               
Cow position:
               
chr28:9126466-9126111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
53, 153
               

               
Conread position:
               
1-350
               

               
Cow position:
               
chr28:22270077-22270442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
54, 37
               

               
Conread position:
               
7-320
               

               
Cow position:
               
chr28:16769319-16769639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
93, 46
               

               
Conread position:
               
7-348
               

               
Cow position:
               
chr28:16558819-16559165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
92, 53
               

               
Conread position:
               
11-348
               

               
Cow position:
               
chr28:4826353-4826020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
88, 51
               

               
Conread position:
               
24-348
               

               
Cow position:
               
chr28:8615684-8615360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
5, 87
               

               
Conread position:
               
27-354
               

               
Cow position:
               
chr28:11601994-11601655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
30, 98
               

               
Conread position:
               
1-334
               

               
Cow position:
               
chr29:33128516-33128859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
54, 23
               

               
Conread position:
               
1-348
               

               
Cow position:
               
chr29:5636677-5637039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
54, 14
               

               
Conread position:
               
32-348
               

               
Cow position:
               
chr29:31156441-31156113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
23, 118
               

               
Conread position:
               
32-348
               

               
Cow position:
               
chr29:36727624-36727954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
18, 125
               

               
Conread position:
               
100-348
               

               
Cow position:
               
chr29:29622552-29622797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
97, 37
               

               
Conread position:
               
110-350
               

               
Cow position:
               
chr29:21516090-21515846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
91, 29
               

               
Conread position:
               
347-798
               

               
Cow position:
               
chr29:40561741-40561273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
374
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 89
               

               
Conread position:
               
1-283
               

               
Cow position:
               
chr3:60618320-60618603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
54, 107
               

               
Conread position:
               
1-284
               

               
Cow position:
               
chr3:68331319-68331019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
56, 101
               

               
Conread position:
               
1-325
               

               
Cow position:
               
chr3:56575956-56575619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
39, 146
               

               
Conread position:
               
1-337
               

               
Cow position:
               
chr3:76976463-76976814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
55, 151
               

               
Conread position:
               
1-341
               

               
Cow position:
               
chr3:11553130-11553481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
14, 109
               

               
Conread position:
               
1-341
               

               
Cow position:
               
chr3:56203048-56202695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
10, 136
               

               
Conread position:
               
1-348
               

               
Cow position:
               
chr3:62784885-62784530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
48, 146
               

               
Conread position:
               
4-349
               

               
Cow position:
               
chr3:26255617-26255264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
35, 66
               

               
Conread position:
               
5-333
               

               
Cow position:
               
chr3:15658190-15658519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
50, 70
               

               
Conread position:
               
6-350
               

               
Cow position:
               
chr3:4344293-4344643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
45, 80
               

               
Conread position:
               
11-337
               

               
Cow position:
               
chr3:74084329-74084659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
47, 134
               

               
Conread position:
               
24-348
               

               
Cow position:
               
chr3:77194832-77195164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
25, 47
               

               
Conread position:
               
27-347
               

               
Cow position:
               
chr3:25193294-25193612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
23, 12
               

               
Conread position:
               
27-348
               

               
Cow position:
               
chr3:70839622-70839952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
27, 119
               

               
Conread position:
               
28-348
               

               
Cow position:
               
chr3:4465476-4465149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
30, 116
               

               
Conread position:
               
41-348
               

               
Cow position:
               
chr3:66041655-66041350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
13, 104
               

               
Conread position:
               
50-348
               

               
Cow position:
               
chr3:55130270-55130569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
47, 97
               

               
Conread position:
               
100-348
               

               
Cow position:
               
chr3:49160391-49160143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
96, 39
               

               
Conread position:
               
100-348
               

               
Cow position:
               
chr3:69714829-69715083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
61, 37
               

               
Conread position:
               
111-348
               

               
Cow position:
               
chr3:59355316-59355077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
115, 28
               

               
Conread position:
               
1-348
               

               
Cow position:
               
chr4:36071092-36071451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
54, 28
               

               
Conread position:
               
1-348
               

               
Cow position:
               
chr4:47978682-47979027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
51, 64
               

               
Conread position:
               
7-342
               

               
Cow position:
               
chr4:28778262-28778602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
44, 62
               

               
Conread position:
               
8-348
               

               
Cow position:
               
chr4:8567633-8567287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
10, 141
               

               
Conread position:
               
10-340
               

               
Cow position:
               
chr4:57428762-57428418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
80, 50
               

               
Conread position:
               
27-337
               

               
Cow position:
               
chr4:22877706-22877386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
28, 126
               

               
Conread position:
               
29-340
               

               
Cow position:
               
chr4:39080019-39079704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
24, 56
               

               
Conread position:
               
32-284
               

               
Cow position:
               
chr4:56670432-56670708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
22, 120
               

               
Conread position:
               
100-337
               

               
Cow position:
               
chr4:59889981-59889742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
100, 36
               

               
Conread position:
               
100-348
               

               
Cow position:
               
chr4:39259887-39259639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
45, 177
               

               
Conread position:
               
100-348
               

               
Cow position:
               
chr4:49359173-49358931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
100, 20
               

               
Conread position:
               
100-348
               

               
Cow position:
               
chr4:57475678-57475920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
100, 39
               

               
Conread position:
               
101-338
               

               
Cow position:
               
chr4:37650946-37651181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
100, 34
               

               
Conread position:
               
1-319
               

               
Cow position:
               
chr5:70631233-70630902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
50, 86
               

               
Conread position:
               
1-336
               

               
Cow position:
               
chr5:35215455-35215122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
43, 57
               

               
Conread position:
               
1-337
               

               
Cow position:
               
chr5:21184583-21184235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
54, 176
               

               
Conread position:
               
1-337
               

               
Cow position:
               
chr5:63631628-63631981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
53, 230
               

               
Conread position:
               
1-348
               

               
Cow position:
               
chr5:21167789-21167437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
54, 148
               

               
Conread position:
               
1-348
               

               
Cow position:
               
chr5:22890351-22889995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
54, 147
               

               
Conread position:
               
1-348
               

               
Cow position:
               
chr5:27899368-27899017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
64, 147
               

               
Conread position:
               
4-348
               

               
Cow position:
               
chr5:27101028-27101384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
52, 155
               

               
Conread position:
               
5-315
               

               
Cow position:
               
chr5:62268331-62268656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
44, 147
               

               
Conread position:
               
5-336
               

               
Cow position:
               
chr5:61101996-61102346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
49, 70
               

               
Conread position:
               
7-348
               

               
Cow position:
               
chr5:4105297-4105654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
49, 143
               

               
Conread position:
               
7-348
               

               
Cow position:
               
chr5:46317658-46317312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
48, 145
               

               
Conread position:
               
9-348
               

               
Cow position:
               
chr5:24539197-24538847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
46, 62
               

               
Conread position:
               
17-344
               

               
Cow position:
               
chr5:25254490-25254820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
38, 131
               

               
Conread position:
               
24-304
               

               
Cow position:
               
chr5:4084312-4084020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
29, 131
               

               
Conread position:
               
27-348
               

               
Cow position:
               
chr5:20693446-20693124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
28, 70
               

               
Conread position:
               
32-324
               

               
Cow position:
               
chr5:62608978-62609284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
23, 120
               

               
Conread position:
               
36-348
               

               
Cow position:
               
chr5:41556714-41556399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
18, 110
               

               
Conread position:
               
90-350
               

               
Cow position:
               
chr5:34452677-34452412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
13, 50
               

               
Conread position:
               
100-325
               

               
Cow position:
               
chr5:47044053-47044282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
96, 37
               

               
Conread position:
               
157-348
               

               
Cow position:
               
chr5:16159692-16159891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
1-348
               

               
Cow position:
               
chr6:43587175-43587536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
57, 149
               

               
Conread position:
               
2-348
               

               
Cow position:
               
chr6:44921468-44921826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
54, 14
               

               
Conread position:
               
4-340
               

               
Cow position:
               
chr6:38778213-38777865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
51, 145
               

               
Conread position:
               
17-333
               

               
Cow position:
               
chr6:34693751-34694071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
12, 18
               

               
Conread position:
               
34-283
               

               
Cow position:
               
chr6:10111266-10111529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
21, 210
               

               
Conread position:
               
100-348
               

               
Cow position:
               
chr6:38814149-38813902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
97, 33
               

               
Conread position:
               
1-326
               

               
Cow position:
               
chr7:44523236-44522908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
93, 53
               

               
Conread position:
               
1-334
               

               
Cow position:
               
chr7:9107959-9108306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
54, 153
               

               
Conread position:
               
1-348
               

               
Cow position:
               
chr7:14903848-14903489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
56, 148
               

               
Conread position:
               
1-348
               

               
Cow position:
               
chr7:34665929-34666290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
10, 205
               

               
Conread position:
               
1-348
               

               
Cow position:
               
chr7:42161779-42162135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
57, 152
               

               
Conread position:
               
4-333
               

               
Cow position:
               
chr7:3163903-3163567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
35, 148
               

               
Conread position:
               
4-351
               

               
Cow position:
               
chr7:17392312-17391955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
54, 163
               

               
Conread position:
               
7-305
               

               
Cow position:
               
chr7:28596168-28596475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
48, 19
               

               
Conread position:
               
8-348
               

               
Cow position:
               
chr7:7890375-7890021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
47, 148
               

               
Conread position:
               
24-348
               

               
Cow position:
               
chr7:48725725-48725402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
26, 80
               

               
Conread position:
               
24-350
               

               
Cow position:
               
chr7:18893729-18893403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
31, 15
               

               
Conread position:
               
26-339
               

               
Cow position:
               
chr7:21249382-21249696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
26, 122
               

               
Conread position:
               
27-335
               

               
Cow position:
               
chr7:8646557-8646253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
27, 35
               

               
Conread position:
               
29-316
               

               
Cow position:
               
chr7:6784276-6784575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
19, 123
               

               
Conread position:
               
36-348
               

               
Cow position:
               
chr7:9098100-9098415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
59, 106
               

               
Conread position:
               
54-342
               

               
Cow position:
               
chr7:43218820-43218529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
45, 97
               

               
Conread position:
               
81-348
               

               
Cow position:
               
chr7:2666300-2666570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
57, 22
               

               
Conread position:
               
95-323
               

               
Cow position:
               
chr7:30684208-30684434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
27, 49
               

               
Conread position:
               
100-347
               

               
Cow position:
               
chr7:33356614-33356857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
146, 37
               

               
Conread position:
               
100-348
               

               
Cow position:
               
chr7:1348474-1348226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
100, 39
               

               
Conread position:
               
100-348
               

               
Cow position:
               
chr7:21050891-21051139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
90, 39
               

               
Conread position:
               
1-252
               

               
Cow position:
               
chr8:52786102-52786368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
53, 40
               

               
Conread position:
               
1-310
               

               
Cow position:
               
chr8:48074105-48074417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
48, 134
               

               
Conread position:
               
1-333
               

               
Cow position:
               
chr8:30110001-30110349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
54, 85
               

               
Conread position:
               
1-340
               

               
Cow position:
               
chr8:28293495-28293150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
54, 33
               

               
Conread position:
               
1-348
               

               
Cow position:
               
chr8:20634479-20634113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
48, 72
               

               
Conread position:
               
1-348
               

               
Cow position:
               
chr8:36941992-36941634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
54, 149
               

               
Conread position:
               
1-348
               

               
Cow position:
               
chr8:51926144-51926504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
50, 156
               

               
Conread position:
               
4-342
               

               
Cow position:
               
chr8:42617696-42618036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
38, 97
               

               
Conread position:
               
4-348
               

               
Cow position:
               
chr8:5514036-5513684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
51, 146
               

               
Conread position:
               
4-348
               

               
Cow position:
               
chr8:13824925-13824578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
49, 103
               

               
Conread position:
               
9-348
               

               
Cow position:
               
chr8:17892956-17893290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
52, 132
               

               
Conread position:
               
19-347
               

               
Cow position:
               
chr8:43407157-43406820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
39, 129
               

               
Conread position:
               
23-325
               

               
Cow position:
               
chr8:45568321-45568008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
76, 127
               

               
Conread position:
               
32-353
               

               
Cow position:
               
chr8:60436384-60436718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
9, 118
               

               
Conread position:
               
48-337
               

               
Cow position:
               
chr8:23104588-23104876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
53, 80
               

               
Conread position:
               
49-337
               

               
Cow position:
               
chr8:2366867-2366567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
109-339
               

               
Cow position:
               
chr8:42819223-42818992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
99, 30
               

               
Conread position:
               
119-337
               

               
Cow position:
               
chr8:13936988-13936768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
78, 20
               

               
Conread position:
               
1-329
               

               
Cow position:
               
chr9:43194286-43194629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
10, 151
               

               
Conread position:
               
1-334
               

               
Cow position:
               
chr9:6684477-6684817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
54, 21
               

               
Conread position:
               
1-337
               

               
Cow position:
               
chr9:46358295-46358642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
54, 132
               

               
Conread position:
               
1-348
               

               
Cow position:
               
chr9:34131853-34131499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
48, 86
               

               
Conread position:
               
1-348
               

               
Cow position:
               
chr9:62630851-62631197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
56, 112
               

               
Conread position:
               
7-329
               

               
Cow position:
               
chr9:19894945-19894612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
44, 14
               

               
Conread position:
               
27-327
               

               
Cow position:
               
chr9:17368382-17368069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
24, 56
               

               
Conread position:
               
32-348
               

               
Cow position:
               
chr9:23855749-23856074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
22, 54
               

               
Conread position:
               
100-307
               

               
Cow position:
               
chr9:45152941-45153148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
100, 43
               

               
Conread position:
               
1-335
               

               
Cow position:
               
chrX:23927428-23927082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 342
               

               
Conread position:
               
1-336
               

               
Cow position:
               
chrX:33672505-33672851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
54, 11
               

               
Conread position:
               
1-348
               

               
Cow position:
               
chrX:22136511-22136160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 148
               

               
Conread position:
               
1-348
               

               
Cow position:
               
chrX:25150939-25151290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
54, 107
               

               
Conread position:
               
2-329
               

               
Cow position:
               
chrX:18794257-18793920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
50, 148
               

               
Conread position:
               
4-196
               

               
Cow position:
               
chrX:11799461-11799660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
51, 20
               

               
Conread position:
               
4-325
               

               
Cow position:
               
chrX:18459711-18459371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
4-342
               

               
Cow position:
               
chrX:19657134-19656779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
49, 152
               

               
Conread position:
               
7-348
               

               
Cow position:
               
chrX:23484943-23485285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
68, 141
               

               
Conread position:
               
7-348
               

               
Cow position:
               
chrX:26288933-26288579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
50, 143
               

               
Conread position:
               
7-348
               

               
Cow position:
               
chrX:31839259-31839609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
48, 145
               

               
Conread position:
               
13-348
               

               
Cow position:
               
chrX:11904569-11904224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
36, 139
               

               
Conread position:
               
24-348
               

               
Cow position:
               
chrX:20335536-20335210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
27, 84
               

               
Conread position:
               
32-328
               

               
Cow position:
               
chrX:28838724-28839028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
23, 30
               

               
Conread position:
               
32-348
               

               
Cow position:
               
chrX:33736414-33736750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
25, 121
               

               
Conread position:
               
48-347
               

               
Cow position:
               
chrX:18405662-18405362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
53, 99
               

               
Conread position:
               
61-349
               

               
Cow position:
               
chrX:18799248-18798952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
34, 87
               

               
Conread position:
               
70-341
               

               
Cow position:
               
chrX:37905809-37906086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
27, 72
               

               
Conread position:
               
100-347
               

               
Cow position:
               
chrX:25046183-25046430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
96, 39
               

               
Conread position:
               
155-348
               

               
Cow position:
               
chrX:39855098-39855293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
55, 38