Non-Coding RNA Search

Cow genome map


           Conread name:
           Thy1-THY010121F06
        

               Conread position:
               45-473
               

               Cow position:
               chr1:44769010-44769424 (view UCSC Genome Browser custom track)
               

               Alignm length:
               432
               

               Alignm identity:
               299
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               132, 28
               

               Conread position:
               83-473
               

               Cow position:
               chr1:72011748-72012121 (view UCSC Genome Browser custom track)
               

               Alignm length:
               397
               

               Alignm identity:
               273
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               7, 90
               

               Conread position:
               88-430
               

               Cow position:
               chr1:4032691-4032364 (view UCSC Genome Browser custom track)
               

               Alignm length:
               344
               

               Alignm identity:
               241
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               76, 224
               

               Conread position:
               88-473
               

               Cow position:
               chr1:53308330-53308707 (view UCSC Genome Browser custom track)
               

               Alignm length:
               390
               

               Alignm identity:
               280
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               76, 123
               

               Conread position:
               88-473
               

               Cow position:
               chr1:68276472-68276092 (view UCSC Genome Browser custom track)
               

               Alignm length:
               388
               

               Alignm identity:
               274
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               78, 6
               

               Conread position:
               88-473
               

               Cow position:
               chr1:69539750-69539382 (view UCSC Genome Browser custom track)
               

               Alignm length:
               388
               

               Alignm identity:
               272
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               334, 76
               

               Conread position:
               89-273
               

               Cow position:
               chr1:72813674-72813492 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               127
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               61, 0
               

               Conread position:
               89-280
               

               Cow position:
               chr1:100569214-100569024 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               129
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               83, 0
               

               Conread position:
               89-309
               

               Cow position:
               chr1:33409567-33409784 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               147
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               71, 0
               

               Conread position:
               89-309
               

               Cow position:
               chr1:42545721-42545940 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               157
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               76, 175
               

               Conread position:
               89-320
               

               Cow position:
               chr1:74927942-74927713 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               158
               

               Alignm E-value:
               9e-27
               

               Alignm gaps (pig, cow):
               173, 85
               

               Conread position:
               89-321
               

               Cow position:
               chr1:75142055-75141834 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               165
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               85, 0
               

               Conread position:
               89-337
               

               Cow position:
               chr1:65904940-65905188 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               166
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               77, 105
               

               Conread position:
               89-340
               

               Cow position:
               chr1:73682184-73682420 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               171
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               84, 0
               

               Conread position:
               89-343
               

               Cow position:
               chr1:42398133-42398383 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               177
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               67, 92
               

               Conread position:
               89-345
               

               Cow position:
               chr1:54156677-54156929 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               185
               

               Alignm E-value:
               7e-35
               

               Alignm gaps (pig, cow):
               167, 12
               

               Conread position:
               89-347
               

               Cow position:
               chr1:6788225-6788480 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               184
               

               Alignm E-value:
               9e-38
               

               Alignm gaps (pig, cow):
               74, 88
               

               Conread position:
               89-347
               

               Cow position:
               chr1:13810705-13810458 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               175
               

               Alignm E-value:
               9e-27
               

               Alignm gaps (pig, cow):
               60, 0
               

               Conread position:
               89-347
               

               Cow position:
               chr1:72103908-72103656 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               182
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               67, 92
               

               Conread position:
               89-347
               

               Cow position:
               chr1:84906005-84906258 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               175
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               77, 163
               

               Conread position:
               89-360
               

               Cow position:
               chr1:63138899-63138636 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               186
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               94, 0
               

               Conread position:
               89-366
               

               Cow position:
               chr1:86482962-86482695 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               193
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               61, 90
               

               Conread position:
               89-367
               

               Cow position:
               chr1:85867647-85867384 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               193
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               195, 85
               

               Conread position:
               89-372
               

               Cow position:
               chr1:98311128-98310846 (view UCSC Genome Browser custom track)
               

               Alignm length:
               286
               

               Alignm identity:
               200
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               182, 77
               

               Conread position:
               89-381
               

               Cow position:
               chr1:70422362-70422077 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               192
               

               Alignm E-value:
               8e-26
               

               Alignm gaps (pig, cow):
               96, 61
               

               Conread position:
               89-386
               

               Cow position:
               chr1:24728782-24729068 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               200
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               67, 34
               

               Conread position:
               89-387
               

               Cow position:
               chr1:56635156-56634869 (view UCSC Genome Browser custom track)
               

               Alignm length:
               300
               

               Alignm identity:
               205
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               75, 62
               

               Conread position:
               89-387
               

               Cow position:
               chr1:89076575-89076865 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               220
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               168, 74
               

               Conread position:
               89-397
               

               Cow position:
               chr1:26729776-26729489 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               216
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               77, 0
               

               Conread position:
               89-398
               

               Cow position:
               chr1:44507031-44506728 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               224
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               74, 173
               

               Conread position:
               89-405
               

               Cow position:
               chr1:56477650-56477348 (view UCSC Genome Browser custom track)
               

               Alignm length:
               319
               

               Alignm identity:
               225
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               75, 168
               

               Conread position:
               89-406
               

               Cow position:
               chr1:42138916-42138617 (view UCSC Genome Browser custom track)
               

               Alignm length:
               319
               

               Alignm identity:
               230
               

               Alignm E-value:
               4.99983e-42
               

               Alignm gaps (pig, cow):
               302, 77
               

               Conread position:
               89-409
               

               Cow position:
               chr1:1185787-1185488 (view UCSC Genome Browser custom track)
               

               Alignm length:
               321
               

               Alignm identity:
               222
               

               Alignm E-value:
               8e-36
               

               Alignm gaps (pig, cow):
               77, 0
               

               Conread position:
               89-412
               

               Cow position:
               chr1:57639457-57639774 (view UCSC Genome Browser custom track)
               

               Alignm length:
               329
               

               Alignm identity:
               232
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               121, 88
               

               Conread position:
               89-412
               

               Cow position:
               chr1:93810487-93810189 (view UCSC Genome Browser custom track)
               

               Alignm length:
               325
               

               Alignm identity:
               223
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               125, 84
               

               Conread position:
               89-414
               

               Cow position:
               chr1:45555424-45555106 (view UCSC Genome Browser custom track)
               

               Alignm length:
               330
               

               Alignm identity:
               230
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               74, 88
               

               Conread position:
               89-416
               

               Cow position:
               chr1:42555324-42555012 (view UCSC Genome Browser custom track)
               

               Alignm length:
               329
               

               Alignm identity:
               232
               

               Alignm E-value:
               4.99983e-42
               

               Alignm gaps (pig, cow):
               62, 100
               

               Conread position:
               89-417
               

               Cow position:
               chr1:34856570-34856888 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               229
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               152, 201
               

               Conread position:
               89-421
               

               Cow position:
               chr1:47658403-47658092 (view UCSC Genome Browser custom track)
               

               Alignm length:
               334
               

               Alignm identity:
               235
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               95, 75
               

               Conread position:
               89-434
               

               Cow position:
               chr1:38277970-38278324 (view UCSC Genome Browser custom track)
               

               Alignm length:
               362
               

               Alignm identity:
               250
               

               Alignm E-value:
               9e-38
               

               Alignm gaps (pig, cow):
               94, 102
               

               Conread position:
               89-440
               

               Cow position:
               chr1:635252-634909 (view UCSC Genome Browser custom track)
               

               Alignm length:
               352
               

               Alignm identity:
               247
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               85, 0
               

               Conread position:
               89-459
               

               Cow position:
               chr1:31934565-31934212 (view UCSC Genome Browser custom track)
               

               Alignm length:
               371
               

               Alignm identity:
               266
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               84, 0
               

               Conread position:
               89-461
               

               Cow position:
               chr1:61176236-61175881 (view UCSC Genome Browser custom track)
               

               Alignm length:
               373
               

               Alignm identity:
               269
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               64, 0
               

               Conread position:
               89-469
               

               Cow position:
               chr1:11729233-11728882 (view UCSC Genome Browser custom track)
               

               Alignm length:
               381
               

               Alignm identity:
               253
               

               Alignm E-value:
               6e-34
               

               Alignm gaps (pig, cow):
               82, 0
               

               Conread position:
               89-469
               

               Cow position:
               chr1:83083066-83082694 (view UCSC Genome Browser custom track)
               

               Alignm length:
               385
               

               Alignm identity:
               266
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               67, 108
               

               Conread position:
               89-473
               

               Cow position:
               chr1:48444136-48444493 (view UCSC Genome Browser custom track)
               

               Alignm length:
               385
               

               Alignm identity:
               274
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               78, 0
               

               Conread position:
               89-473
               

               Cow position:
               chr1:54199321-54199695 (view UCSC Genome Browser custom track)
               

               Alignm length:
               385
               

               Alignm identity:
               281
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               171, 0
               

               Conread position:
               89-473
               

               Cow position:
               chr1:63390709-63391087 (view UCSC Genome Browser custom track)
               

               Alignm length:
               387
               

               Alignm identity:
               276
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 90
               

               Conread position:
               89-473
               

               Cow position:
               chr1:72034866-72035244 (view UCSC Genome Browser custom track)
               

               Alignm length:
               386
               

               Alignm identity:
               288
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               115, 61
               

               Conread position:
               89-473
               

               Cow position:
               chr1:81228276-81228646 (view UCSC Genome Browser custom track)
               

               Alignm length:
               390
               

               Alignm identity:
               289
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               75, 120
               

               Conread position:
               89-473
               

               Cow position:
               chr1:81913096-81913464 (view UCSC Genome Browser custom track)
               

               Alignm length:
               387
               

               Alignm identity:
               284
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               77, 17
               

               Conread position:
               89-473
               

               Cow position:
               chr1:95215132-95215491 (view UCSC Genome Browser custom track)
               

               Alignm length:
               385
               

               Alignm identity:
               271
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               77, 0
               

               Conread position:
               89-473
               

               Cow position:
               chr1:96365719-96365359 (view UCSC Genome Browser custom track)
               

               Alignm length:
               386
               

               Alignm identity:
               279
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               294, 16
               

               Conread position:
               91-345
               

               Cow position:
               chr1:57880728-57880981 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               176
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               65, 88
               

               Conread position:
               91-377
               

               Cow position:
               chr1:6304808-6305088 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               208
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               80, 0
               

               Conread position:
               91-473
               

               Cow position:
               chr1:51394474-51394095 (view UCSC Genome Browser custom track)
               

               Alignm length:
               398
               

               Alignm identity:
               278
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               101, 73
               

               Conread position:
               92-302
               

               Cow position:
               chr1:65318630-65318426 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               146
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               74, 0
               

               Conread position:
               92-321
               

               Cow position:
               chr1:101632282-101632508 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               159
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               227, 74
               

               Conread position:
               92-322
               

               Cow position:
               chr1:97696799-97696571 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               161
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               77, 14
               

               Conread position:
               92-341
               

               Cow position:
               chr1:86579017-86578764 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               182
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               73, 14
               

               Conread position:
               92-414
               

               Cow position:
               chr1:1165654-1165344 (view UCSC Genome Browser custom track)
               

               Alignm length:
               324
               

               Alignm identity:
               235
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               297, 72
               

               Conread position:
               92-472
               

               Cow position:
               chr1:72068780-72069141 (view UCSC Genome Browser custom track)
               

               Alignm length:
               382
               

               Alignm identity:
               275
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               71, 169
               

               Conread position:
               92-473
               

               Cow position:
               chr1:11226191-11226560 (view UCSC Genome Browser custom track)
               

               Alignm length:
               383
               

               Alignm identity:
               275
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               130, 75
               

               Conread position:
               92-473
               

               Cow position:
               chr1:34159890-34159520 (view UCSC Genome Browser custom track)
               

               Alignm length:
               382
               

               Alignm identity:
               275
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               72, 0
               

               Conread position:
               92-473
               

               Cow position:
               chr1:37309464-37309825 (view UCSC Genome Browser custom track)
               

               Alignm length:
               388
               

               Alignm identity:
               270
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               327, 81
               

               Conread position:
               92-473
               

               Cow position:
               chr1:39418056-39418433 (view UCSC Genome Browser custom track)
               

               Alignm length:
               391
               

               Alignm identity:
               285
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               58, 99
               

               Conread position:
               92-473
               

               Cow position:
               chr1:80336194-80336565 (view UCSC Genome Browser custom track)
               

               Alignm length:
               385
               

               Alignm identity:
               276
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               294, 73
               

               Conread position:
               94-473
               

               Cow position:
               chr1:52329465-52329842 (view UCSC Genome Browser custom track)
               

               Alignm length:
               390
               

               Alignm identity:
               276
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               30, 38
               

               Conread position:
               95-313
               

               Cow position:
               chr1:77683404-77683197 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               155
               

               Alignm E-value:
               9e-27
               

               Alignm gaps (pig, cow):
               75, 0
               

               Conread position:
               95-346
               

               Cow position:
               chr1:86279465-86279225 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               177
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               57, 66
               

               Conread position:
               95-386
               

               Cow position:
               chr1:43357959-43358243 (view UCSC Genome Browser custom track)
               

               Alignm length:
               292
               

               Alignm identity:
               195
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               20, 0
               

               Conread position:
               95-388
               

               Cow position:
               chr1:64804050-64804338 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               210
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               107, 0
               

               Conread position:
               95-404
               

               Cow position:
               chr1:48581181-48580884 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               213
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               290, 72
               

               Conread position:
               95-417
               

               Cow position:
               chr1:76470705-76470400 (view UCSC Genome Browser custom track)
               

               Alignm length:
               324
               

               Alignm identity:
               234
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               69, 30
               

               Conread position:
               95-422
               

               Cow position:
               chr1:60707455-60707139 (view UCSC Genome Browser custom track)
               

               Alignm length:
               329
               

               Alignm identity:
               226
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               61, 26
               

               Conread position:
               95-473
               

               Cow position:
               chr1:54258619-54258257 (view UCSC Genome Browser custom track)
               

               Alignm length:
               381
               

               Alignm identity:
               271
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               82, 123
               

               Conread position:
               95-473
               

               Cow position:
               chr1:100421877-100421530 (view UCSC Genome Browser custom track)
               

               Alignm length:
               379
               

               Alignm identity:
               258
               

               Alignm E-value:
               7e-35
               

               Alignm gaps (pig, cow):
               71, 0
               

               Conread position:
               96-319
               

               Cow position:
               chr1:95558088-95557870 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               156
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               70, 0
               

               Conread position:
               97-416
               

               Cow position:
               chr1:79165032-79165350 (view UCSC Genome Browser custom track)
               

               Alignm length:
               322
               

               Alignm identity:
               232
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               229, 163
               

               Conread position:
               97-473
               

               Cow position:
               chr1:61735385-61735757 (view UCSC Genome Browser custom track)
               

               Alignm length:
               380
               

               Alignm identity:
               264
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               331, 106
               

               Conread position:
               97-473
               

               Cow position:
               chr1:102647223-102647584 (view UCSC Genome Browser custom track)
               

               Alignm length:
               378
               

               Alignm identity:
               269
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               125, 69
               

               Conread position:
               98-417
               

               Cow position:
               chr1:45535756-45535443 (view UCSC Genome Browser custom track)
               

               Alignm length:
               320
               

               Alignm identity:
               232
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               85, 0
               

               Conread position:
               99-473
               

               Cow position:
               chr1:35162458-35162089 (view UCSC Genome Browser custom track)
               

               Alignm length:
               375
               

               Alignm identity:
               277
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               67, 0
               

               Conread position:
               101-336
               

               Cow position:
               chr1:60281419-60281187 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               159
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               63, 90
               

               Conread position:
               106-429
               

               Cow position:
               chr1:43839570-43839256 (view UCSC Genome Browser custom track)
               

               Alignm length:
               325
               

               Alignm identity:
               215
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               60, 72
               

               Conread position:
               107-469
               

               Cow position:
               chr1:43379984-43380334 (view UCSC Genome Browser custom track)
               

               Alignm length:
               365
               

               Alignm identity:
               274
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 81
               

               Conread position:
               107-472
               

               Cow position:
               chr1:73561607-73561963 (view UCSC Genome Browser custom track)
               

               Alignm length:
               367
               

               Alignm identity:
               269
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               56, 77
               

               Conread position:
               112-341
               

               Cow position:
               chr1:68763649-68763866 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               160
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               65, 0
               

               Conread position:
               112-446
               

               Cow position:
               chr1:29626877-29627203 (view UCSC Genome Browser custom track)
               

               Alignm length:
               335
               

               Alignm identity:
               247
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               61, 0
               

               Conread position:
               115-371
               

               Cow position:
               chr1:68996212-68995958 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               185
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               144, 51
               

               Conread position:
               115-414
               

               Cow position:
               chr1:59518954-59518646 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               218
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               49, 63
               

               Conread position:
               115-416
               

               Cow position:
               chr1:82337744-82338043 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               227
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               51, 71
               

               Conread position:
               115-417
               

               Cow position:
               chr1:74084156-74084448 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               219
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               51, 140
               

               Conread position:
               115-473
               

               Cow position:
               chr1:53495500-53495147 (view UCSC Genome Browser custom track)
               

               Alignm length:
               361
               

               Alignm identity:
               260
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               240, 78
               

               Conread position:
               116-473
               

               Cow position:
               chr1:76222657-76223006 (view UCSC Genome Browser custom track)
               

               Alignm length:
               360
               

               Alignm identity:
               257
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 61
               

               Conread position:
               117-446
               

               Cow position:
               chr1:3751908-3752231 (view UCSC Genome Browser custom track)
               

               Alignm length:
               333
               

               Alignm identity:
               241
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               137, 59
               

               Conread position:
               130-420
               

               Cow position:
               chr1:50679262-50679547 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               203
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               36, 68
               

               Conread position:
               163-473
               

               Cow position:
               chr1:79591094-79590785 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               238
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               183, 0
               

               Conread position:
               164-399
               

               Cow position:
               chr1:20288104-20287876 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               169
               

               Alignm E-value:
               6e-34
               

               Alignm gaps (pig, cow):
               97, 0
               

               Conread position:
               164-473
               

               Cow position:
               chr1:11772089-11772396 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               230
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 23
               

               Conread position:
               177-434
               

               Cow position:
               chr1:101547061-101547318 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               187
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               77, 6
               

               Conread position:
               178-454
               

               Cow position:
               chr1:71748039-71748301 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               208
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 0
               

               Conread position:
               178-473
               

               Cow position:
               chr1:83982399-83982691 (view UCSC Genome Browser custom track)
               

               Alignm length:
               297
               

               Alignm identity:
               217
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               189, 8
               

               Conread position:
               178-473
               

               Cow position:
               chr1:92370388-92370674 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               223
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 0
               

               Conread position:
               184-469
               

               Cow position:
               chr1:3035027-3035301 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               200
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               226, 74
               

               Conread position:
               186-346
               

               Cow position:
               chr1:98619175-98619016 (view UCSC Genome Browser custom track)
               

               Alignm length:
               161
               

               Alignm identity:
               122
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               47, 0
               

               Conread position:
               187-473
               

               Cow position:
               chr1:89937394-89937674 (view UCSC Genome Browser custom track)
               

               Alignm length:
               290
               

               Alignm identity:
               214
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               132, 60
               

               Conread position:
               195-473
               

               Cow position:
               chr1:57305786-57305516 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               205
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               217, 46
               

               Conread position:
               217-409
               

               Cow position:
               chr1:23905931-23905744 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               147
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               34, 0
               

               Conread position:
               217-473
               

               Cow position:
               chr1:33717161-33716905 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               199
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               201, 130
               

               Conread position:
               217-473
               

               Cow position:
               chr1:65067006-65067267 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               200
               

               Alignm E-value:
               5.00264e-43
               

               Alignm gaps (pig, cow):
               64, 30
               

               Conread position:
               224-473
               

               Cow position:
               chr1:63240874-63240637 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               183
               

               Alignm E-value:
               9e-38
               

               Alignm gaps (pig, cow):
               65, 0
               

               Conread position:
               247-386
               

               Cow position:
               chr1:87083572-87083437 (view UCSC Genome Browser custom track)
               

               Alignm length:
               140
               

               Alignm identity:
               110
               

               Alignm E-value:
               8e-26
               

               Alignm gaps (pig, cow):
               56, 0
               

               Conread position:
               247-387
               

               Cow position:
               chr1:57155495-57155631 (view UCSC Genome Browser custom track)
               

               Alignm length:
               141
               

               Alignm identity:
               107
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               69, 0
               

               Conread position:
               247-469
               

               Cow position:
               chr1:71691724-71691503 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               177
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               100, 0
               

               Conread position:
               247-469
               

               Cow position:
               chr1:77648029-77648264 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               183
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               102, 36
               

               Conread position:
               247-491
               

               Cow position:
               chr1:97430737-97430986 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               187
               

               Alignm E-value:
               6.02558e-44
               

               Alignm gaps (pig, cow):
               79, 101
               

               Conread position:
               81-435
               

               Cow position:
               chr10:64182485-64182143 (view UCSC Genome Browser custom track)
               

               Alignm length:
               356
               

               Alignm identity:
               259
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 58
               

               Conread position:
               87-473
               

               Cow position:
               chr10:11009440-11009077 (view UCSC Genome Browser custom track)
               

               Alignm length:
               391
               

               Alignm identity:
               278
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               67, 87
               

               Conread position:
               88-406
               

               Cow position:
               chr10:24753176-24752879 (view UCSC Genome Browser custom track)
               

               Alignm length:
               320
               

               Alignm identity:
               232
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               78, 87
               

               Conread position:
               88-473
               

               Cow position:
               chr10:20132499-20132872 (view UCSC Genome Browser custom track)
               

               Alignm length:
               386
               

               Alignm identity:
               275
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               79, 0
               

               Conread position:
               88-473
               

               Cow position:
               chr10:59839256-59839637 (view UCSC Genome Browser custom track)
               

               Alignm length:
               395
               

               Alignm identity:
               286
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               6, 63
               

               Conread position:
               89-228
               

               Cow position:
               chr10:52881590-52881728 (view UCSC Genome Browser custom track)
               

               Alignm length:
               141
               

               Alignm identity:
               105
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               75, 88
               

               Conread position:
               89-293
               

               Cow position:
               chr10:47724975-47724777 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               146
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               168, 77
               

               Conread position:
               89-301
               

               Cow position:
               chr10:16986360-16986153 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               150
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               75, 88
               

               Conread position:
               89-302
               

               Cow position:
               chr10:41254545-41254750 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               149
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               17, 0
               

               Conread position:
               89-307
               

               Cow position:
               chr10:45658173-45657960 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               148
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               117, 14
               

               Conread position:
               89-312
               

               Cow position:
               chr10:4184224-4184002 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               170
               

               Alignm E-value:
               3.9937e-43
               

               Alignm gaps (pig, cow):
               76, 171
               

               Conread position:
               89-314
               

               Cow position:
               chr10:48513053-48513275 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               150
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               163, 0
               

               Conread position:
               89-314
               

               Cow position:
               chr10:68829256-68829472 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               159
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               85, 0
               

               Conread position:
               89-336
               

               Cow position:
               chr10:45679046-45678803 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               160
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               71, 0
               

               Conread position:
               89-347
               

               Cow position:
               chr10:46492966-46493224 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               183
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               75, 220
               

               Conread position:
               89-386
               

               Cow position:
               chr10:24560959-24561246 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               215
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               75, 89
               

               Conread position:
               89-393
               

               Cow position:
               chr10:59151836-59152129 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               230
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               152, 76
               

               Conread position:
               89-393
               

               Cow position:
               chr10:59843880-59844190 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               224
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               35, 89
               

               Conread position:
               89-411
               

               Cow position:
               chr10:5889734-5890054 (view UCSC Genome Browser custom track)
               

               Alignm length:
               326
               

               Alignm identity:
               236
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               75, 100
               

               Conread position:
               89-412
               

               Cow position:
               chr10:42745946-42745628 (view UCSC Genome Browser custom track)
               

               Alignm length:
               325
               

               Alignm identity:
               232
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               171, 87
               

               Conread position:
               89-416
               

               Cow position:
               chr10:43438903-43438581 (view UCSC Genome Browser custom track)
               

               Alignm length:
               330
               

               Alignm identity:
               234
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               168, 51
               

               Conread position:
               89-417
               

               Cow position:
               chr10:17844795-17844479 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               244
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               173, 127
               

               Conread position:
               89-428
               

               Cow position:
               chr10:64876548-64876217 (view UCSC Genome Browser custom track)
               

               Alignm length:
               340
               

               Alignm identity:
               239
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               97, 0
               

               Conread position:
               89-431
               

               Cow position:
               chr10:56080143-56080476 (view UCSC Genome Browser custom track)
               

               Alignm length:
               343
               

               Alignm identity:
               247
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               78, 0
               

               Conread position:
               89-437
               

               Cow position:
               chr10:1423859-1423522 (view UCSC Genome Browser custom track)
               

               Alignm length:
               355
               

               Alignm identity:
               253
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               112, 88
               

               Conread position:
               89-444
               

               Cow position:
               chr10:41408303-41407970 (view UCSC Genome Browser custom track)
               

               Alignm length:
               357
               

               Alignm identity:
               252
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               77, 99
               

               Conread position:
               89-459
               

               Cow position:
               chr10:34430197-34430544 (view UCSC Genome Browser custom track)
               

               Alignm length:
               371
               

               Alignm identity:
               264
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               84, 0
               

               Conread position:
               89-462
               

               Cow position:
               chr10:29188327-29188695 (view UCSC Genome Browser custom track)
               

               Alignm length:
               378
               

               Alignm identity:
               264
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               77, 100
               

               Conread position:
               89-467
               

               Cow position:
               chr10:30441018-30441382 (view UCSC Genome Browser custom track)
               

               Alignm length:
               381
               

               Alignm identity:
               262
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               69, 74
               

               Conread position:
               89-468
               

               Cow position:
               chr10:54477131-54476765 (view UCSC Genome Browser custom track)
               

               Alignm length:
               387
               

               Alignm identity:
               277
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               207, 75
               

               Conread position:
               89-469
               

               Cow position:
               chr10:1488860-1488505 (view UCSC Genome Browser custom track)
               

               Alignm length:
               384
               

               Alignm identity:
               272
               

               Alignm E-value:
               4.06377e-44
               

               Alignm gaps (pig, cow):
               321, 71
               

               Conread position:
               89-469
               

               Cow position:
               chr10:12392578-12392938 (view UCSC Genome Browser custom track)
               

               Alignm length:
               385
               

               Alignm identity:
               268
               

               Alignm E-value:
               3.9937e-43
               

               Alignm gaps (pig, cow):
               28, 88
               

               Conread position:
               89-473
               

               Cow position:
               chr10:16645158-16645540 (view UCSC Genome Browser custom track)
               

               Alignm length:
               386
               

               Alignm identity:
               266
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               75, 88
               

               Conread position:
               89-473
               

               Cow position:
               chr10:18042208-18041834 (view UCSC Genome Browser custom track)
               

               Alignm length:
               390
               

               Alignm identity:
               282
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               310, 77
               

               Conread position:
               89-473
               

               Cow position:
               chr10:22616610-22616989 (view UCSC Genome Browser custom track)
               

               Alignm length:
               389
               

               Alignm identity:
               290
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               5, 25
               

               Conread position:
               89-473
               

               Cow position:
               chr10:24022253-24022622 (view UCSC Genome Browser custom track)
               

               Alignm length:
               389
               

               Alignm identity:
               269
               

               Alignm E-value:
               4.06377e-44
               

               Alignm gaps (pig, cow):
               75, 95
               

               Conread position:
               89-473
               

               Cow position:
               chr10:38942460-38942089 (view UCSC Genome Browser custom track)
               

               Alignm length:
               386
               

               Alignm identity:
               272
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               74, 89
               

               Conread position:
               89-473
               

               Cow position:
               chr10:50359945-50359567 (view UCSC Genome Browser custom track)
               

               Alignm length:
               392
               

               Alignm identity:
               282
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               75, 56
               

               Conread position:
               89-473
               

               Cow position:
               chr10:53336376-53336748 (view UCSC Genome Browser custom track)
               

               Alignm length:
               389
               

               Alignm identity:
               273
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               77, 93
               

               Conread position:
               89-473
               

               Cow position:
               chr10:59010107-59010487 (view UCSC Genome Browser custom track)
               

               Alignm length:
               390
               

               Alignm identity:
               262
               

               Alignm E-value:
               3.9937e-43
               

               Alignm gaps (pig, cow):
               169, 77
               

               Conread position:
               89-473
               

               Cow position:
               chr10:59675226-59675598 (view UCSC Genome Browser custom track)
               

               Alignm length:
               385
               

               Alignm identity:
               277
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               76, 0
               

               Conread position:
               92-346
               

               Cow position:
               chr10:6436085-6435839 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               175
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               186, 73
               

               Conread position:
               92-366
               

               Cow position:
               chr10:2853614-2853885 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               185
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               74, 68
               

               Conread position:
               92-371
               

               Cow position:
               chr10:31779243-31779512 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               191
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               172, 0
               

               Conread position:
               92-404
               

               Cow position:
               chr10:15318910-15318609 (view UCSC Genome Browser custom track)
               

               Alignm length:
               316
               

               Alignm identity:
               222
               

               Alignm E-value:
               7e-39
               

               Alignm gaps (pig, cow):
               72, 85
               

               Conread position:
               92-440
               

               Cow position:
               chr10:31466772-31466431 (view UCSC Genome Browser custom track)
               

               Alignm length:
               351
               

               Alignm identity:
               259
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               62, 85
               

               Conread position:
               92-469
               

               Cow position:
               chr10:35862202-35862570 (view UCSC Genome Browser custom track)
               

               Alignm length:
               378
               

               Alignm identity:
               274
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               74, 0
               

               Conread position:
               92-473
               

               Cow position:
               chr10:25849-25472 (view UCSC Genome Browser custom track)
               

               Alignm length:
               395
               

               Alignm identity:
               267
               

               Alignm E-value:
               6e-38
               

               Alignm gaps (pig, cow):
               73, 85
               

               Conread position:
               92-473
               

               Cow position:
               chr10:16598714-16598343 (view UCSC Genome Browser custom track)
               

               Alignm length:
               386
               

               Alignm identity:
               280
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               72, 113
               

               Conread position:
               92-473
               

               Cow position:
               chr10:24871190-24870818 (view UCSC Genome Browser custom track)
               

               Alignm length:
               383
               

               Alignm identity:
               280
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               364, 74
               

               Conread position:
               92-473
               

               Cow position:
               chr10:33891058-33891425 (view UCSC Genome Browser custom track)
               

               Alignm length:
               384
               

               Alignm identity:
               275
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               156, 94
               

               Conread position:
               92-473
               

               Cow position:
               chr10:52046896-52046520 (view UCSC Genome Browser custom track)
               

               Alignm length:
               387
               

               Alignm identity:
               280
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               23, 202
               

               Conread position:
               95-301
               

               Cow position:
               chr10:45965522-45965322 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               146
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               79, 0
               

               Conread position:
               95-306
               

               Cow position:
               chr10:4109611-4109409 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               148
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               142, 71
               

               Conread position:
               95-347
               

               Cow position:
               chr10:55930220-55929976 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               172
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               82, 71
               

               Conread position:
               95-468
               

               Cow position:
               chr10:28721808-28721453 (view UCSC Genome Browser custom track)
               

               Alignm length:
               378
               

               Alignm identity:
               262
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               69, 100
               

               Conread position:
               95-469
               

               Cow position:
               chr10:35752939-35753304 (view UCSC Genome Browser custom track)
               

               Alignm length:
               377
               

               Alignm identity:
               262
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               316, 69
               

               Conread position:
               95-469
               

               Cow position:
               chr10:65423881-65424253 (view UCSC Genome Browser custom track)
               

               Alignm length:
               385
               

               Alignm identity:
               270
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               234, 77
               

               Conread position:
               95-473
               

               Cow position:
               chr10:15868274-15867897 (view UCSC Genome Browser custom track)
               

               Alignm length:
               390
               

               Alignm identity:
               274
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               82, 71
               

               Conread position:
               95-473
               

               Cow position:
               chr10:56733056-56732682 (view UCSC Genome Browser custom track)
               

               Alignm length:
               398
               

               Alignm identity:
               273
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               300, 71
               

               Conread position:
               95-474
               

               Cow position:
               chr10:44783367-44782994 (view UCSC Genome Browser custom track)
               

               Alignm length:
               380
               

               Alignm identity:
               273
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               79, 0
               

               Conread position:
               96-435
               

               Cow position:
               chr10:1088051-1087712 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               246
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               69, 172
               

               Conread position:
               98-391
               

               Cow position:
               chr10:6490744-6491037 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               198
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               50, 65
               

               Conread position:
               98-417
               

               Cow position:
               chr10:20372105-20372421 (view UCSC Genome Browser custom track)
               

               Alignm length:
               320
               

               Alignm identity:
               239
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               69, 0
               

               Conread position:
               99-412
               

               Cow position:
               chr10:6173376-6173072 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               226
               

               Alignm E-value:
               3.9937e-43
               

               Alignm gaps (pig, cow):
               290, 84
               

               Conread position:
               99-464
               

               Cow position:
               chr10:42637251-42636894 (view UCSC Genome Browser custom track)
               

               Alignm length:
               374
               

               Alignm identity:
               259
               

               Alignm E-value:
               4.06377e-44
               

               Alignm gaps (pig, cow):
               65, 214
               

               Conread position:
               100-412
               

               Cow position:
               chr10:49038602-49038275 (view UCSC Genome Browser custom track)
               

               Alignm length:
               329
               

               Alignm identity:
               239
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               64, 271
               

               Conread position:
               107-473
               

               Cow position:
               chr10:21462257-21461895 (view UCSC Genome Browser custom track)
               

               Alignm length:
               373
               

               Alignm identity:
               274
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 156
               

               Conread position:
               112-297
               

               Cow position:
               chr10:4164275-4164093 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               129
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               144, 0
               

               Conread position:
               112-301
               

               Cow position:
               chr10:48408385-48408570 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               133
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               88, 0
               

               Conread position:
               112-406
               

               Cow position:
               chr10:24276726-24277024 (view UCSC Genome Browser custom track)
               

               Alignm length:
               306
               

               Alignm identity:
               217
               

               Alignm E-value:
               7e-39
               

               Alignm gaps (pig, cow):
               104, 63
               

               Conread position:
               113-473
               

               Cow position:
               chr10:35911742-35912092 (view UCSC Genome Browser custom track)
               

               Alignm length:
               364
               

               Alignm identity:
               257
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               52, 132
               

               Conread position:
               115-414
               

               Cow position:
               chr10:37444215-37444503 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               225
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 59
               

               Conread position:
               115-415
               

               Cow position:
               chr10:41255987-41255700 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               209
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               120, 50
               

               Conread position:
               115-416
               

               Cow position:
               chr10:53084176-53083875 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               206
               

               Alignm E-value:
               8.99998e-41
               

               Alignm gaps (pig, cow):
               297, 232
               

               Conread position:
               115-417
               

               Cow position:
               chr10:25149901-25149602 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               212
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               48, 93
               

               Conread position:
               115-469
               

               Cow position:
               chr10:49045848-49045502 (view UCSC Genome Browser custom track)
               

               Alignm length:
               357
               

               Alignm identity:
               254
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               151, 201
               

               Conread position:
               117-416
               

               Cow position:
               chr10:22049261-22048963 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               218
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               52, 63
               

               Conread position:
               134-473
               

               Cow position:
               chr10:52152512-52152177 (view UCSC Genome Browser custom track)
               

               Alignm length:
               344
               

               Alignm identity:
               252
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               56, 132
               

               Conread position:
               138-473
               

               Cow position:
               chr10:61588283-61588605 (view UCSC Genome Browser custom track)
               

               Alignm length:
               336
               

               Alignm identity:
               249
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               22, 0
               

               Conread position:
               140-439
               

               Cow position:
               chr10:19402916-19402624 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               218
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               24, 45
               

               Conread position:
               177-417
               

               Cow position:
               chr10:48259289-48259520 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               176
               

               Alignm E-value:
               5e-36
               

               Alignm gaps (pig, cow):
               10, 0
               

               Conread position:
               177-469
               

               Cow position:
               chr10:57016204-57016481 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               208
               

               Alignm E-value:
               7e-39
               

               Alignm gaps (pig, cow):
               10, 0
               

               Conread position:
               178-386
               

               Cow position:
               chr10:5502967-5502765 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               157
               

               Alignm E-value:
               5e-36
               

               Alignm gaps (pig, cow):
               5, 0
               

               Conread position:
               178-414
               

               Cow position:
               chr10:54936169-54936399 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               172
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               5, 0
               

               Conread position:
               178-473
               

               Cow position:
               chr10:46829817-46829534 (view UCSC Genome Browser custom track)
               

               Alignm length:
               297
               

               Alignm identity:
               224
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 8
               

               Conread position:
               183-473
               

               Cow position:
               chr10:56835219-56834933 (view UCSC Genome Browser custom track)
               

               Alignm length:
               291
               

               Alignm identity:
               221
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               21, 0
               

               Conread position:
               187-335
               

               Cow position:
               chr10:8411934-8411787 (view UCSC Genome Browser custom track)
               

               Alignm length:
               150
               

               Alignm identity:
               112
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               15, 50
               

               Conread position:
               188-346
               

               Cow position:
               chr10:67909567-67909725 (view UCSC Genome Browser custom track)
               

               Alignm length:
               159
               

               Alignm identity:
               113
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               195-435
               

               Cow position:
               chr10:16740130-16740367 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               183
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               226, 120
               

               Conread position:
               213-370
               

               Cow position:
               chr10:23500303-23500459 (view UCSC Genome Browser custom track)
               

               Alignm length:
               158
               

               Alignm identity:
               125
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               131, 0
               

               Conread position:
               226-435
               

               Cow position:
               chr10:30914393-30914189 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               164
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               89, 0
               

               Conread position:
               247-445
               

               Cow position:
               chr10:10699635-10699828 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               160
               

               Alignm E-value:
               4.2039e-45
               

               Alignm gaps (pig, cow):
               60, 0
               

               Conread position:
               42-473
               

               Cow position:
               chr11:17860074-17860494 (view UCSC Genome Browser custom track)
               

               Alignm length:
               435
               

               Alignm identity:
               311
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 52
               

               Conread position:
               84-380
               

               Cow position:
               chr11:30638910-30639196 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               207
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               173, 74
               

               Conread position:
               84-473
               

               Cow position:
               chr11:10076808-10076434 (view UCSC Genome Browser custom track)
               

               Alignm length:
               392
               

               Alignm identity:
               277
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               163, 92
               

               Conread position:
               86-313
               

               Cow position:
               chr11:3920266-3920490 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               156
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               128, 77
               

               Conread position:
               88-317
               

               Cow position:
               chr11:7497611-7497833 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               153
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               40, 0
               

               Conread position:
               88-323
               

               Cow position:
               chr11:1157679-1157449 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               166
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               113, 22
               

               Conread position:
               88-381
               

               Cow position:
               chr11:2084179-2083899 (view UCSC Genome Browser custom track)
               

               Alignm length:
               297
               

               Alignm identity:
               212
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               78, 87
               

               Conread position:
               88-444
               

               Cow position:
               chr11:6835569-6835219 (view UCSC Genome Browser custom track)
               

               Alignm length:
               360
               

               Alignm identity:
               256
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               78, 33
               

               Conread position:
               88-469
               

               Cow position:
               chr11:29916577-29916211 (view UCSC Genome Browser custom track)
               

               Alignm length:
               392
               

               Alignm identity:
               264
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               78, 164
               

               Conread position:
               89-281
               

               Cow position:
               chr11:32254182-32254371 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               135
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               89, 0
               

               Conread position:
               89-300
               

               Cow position:
               chr11:16907016-16907214 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               150
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               24, 0
               

               Conread position:
               89-306
               

               Cow position:
               chr11:71501097-71501312 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               146
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               177, 74
               

               Conread position:
               89-308
               

               Cow position:
               chr11:37804519-37804734 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               152
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               75, 88
               

               Conread position:
               89-323
               

               Cow position:
               chr11:13592770-13592542 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               168
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               85, 0
               

               Conread position:
               89-338
               

               Cow position:
               chr11:49231908-49231667 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               169
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               77, 0
               

               Conread position:
               89-341
               

               Cow position:
               chr11:61958709-61958959 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               179
               

               Alignm E-value:
               9e-39
               

               Alignm gaps (pig, cow):
               108, 0
               

               Conread position:
               89-346
               

               Cow position:
               chr11:19593852-19593604 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               173
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               77, 32
               

               Conread position:
               89-346
               

               Cow position:
               chr11:38874367-38874617 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               185
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               88, 0
               

               Conread position:
               89-347
               

               Cow position:
               chr11:61246424-61246673 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               173
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               75, 0
               

               Conread position:
               89-365
               

               Cow position:
               chr11:32436369-32436096 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               198
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               75, 89
               

               Conread position:
               89-366
               

               Cow position:
               chr11:36114191-36113923 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               191
               

               Alignm E-value:
               7e-26
               

               Alignm gaps (pig, cow):
               142, 74
               

               Conread position:
               89-386
               

               Cow position:
               chr11:45872276-45872572 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               210
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               77, 71
               

               Conread position:
               89-387
               

               Cow position:
               chr11:66188282-66188576 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               207
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               77, 146
               

               Conread position:
               89-406
               

               Cow position:
               chr11:45631731-45632038 (view UCSC Genome Browser custom track)
               

               Alignm length:
               318
               

               Alignm identity:
               234
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               36, 0
               

               Conread position:
               89-411
               

               Cow position:
               chr11:32378222-32377909 (view UCSC Genome Browser custom track)
               

               Alignm length:
               324
               

               Alignm identity:
               230
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               77, 21
               

               Conread position:
               89-414
               

               Cow position:
               chr11:49934696-49935025 (view UCSC Genome Browser custom track)
               

               Alignm length:
               335
               

               Alignm identity:
               238
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               77, 174
               

               Conread position:
               89-416
               

               Cow position:
               chr11:6233845-6234162 (view UCSC Genome Browser custom track)
               

               Alignm length:
               329
               

               Alignm identity:
               231
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               77, 89
               

               Conread position:
               89-417
               

               Cow position:
               chr11:40478818-40479156 (view UCSC Genome Browser custom track)
               

               Alignm length:
               350
               

               Alignm identity:
               240
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               177, 84
               

               Conread position:
               89-417
               

               Cow position:
               chr11:43430422-43430731 (view UCSC Genome Browser custom track)
               

               Alignm length:
               330
               

               Alignm identity:
               235
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               77, 17
               

               Conread position:
               89-417
               

               Cow position:
               chr11:55333944-55333627 (view UCSC Genome Browser custom track)
               

               Alignm length:
               329
               

               Alignm identity:
               234
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               76, 0
               

               Conread position:
               89-417
               

               Cow position:
               chr11:67804784-67804466 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               241
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               126, 74
               

               Conread position:
               89-422
               

               Cow position:
               chr11:36981598-36981278 (view UCSC Genome Browser custom track)
               

               Alignm length:
               336
               

               Alignm identity:
               233
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               74, 90
               

               Conread position:
               89-431
               

               Cow position:
               chr11:14649279-14649611 (view UCSC Genome Browser custom track)
               

               Alignm length:
               344
               

               Alignm identity:
               238
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               150, 71
               

               Conread position:
               89-435
               

               Cow position:
               chr11:70273341-70273001 (view UCSC Genome Browser custom track)
               

               Alignm length:
               350
               

               Alignm identity:
               250
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               92, 76
               

               Conread position:
               89-445
               

               Cow position:
               chr11:18588551-18588892 (view UCSC Genome Browser custom track)
               

               Alignm length:
               358
               

               Alignm identity:
               257
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               67, 72
               

               Conread position:
               89-446
               

               Cow position:
               chr11:287301-287647 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               245
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               300, 98
               

               Conread position:
               89-446
               

               Cow position:
               chr11:23232480-23232826 (view UCSC Genome Browser custom track)
               

               Alignm length:
               360
               

               Alignm identity:
               263
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               31, 77
               

               Conread position:
               89-446
               

               Cow position:
               chr11:36986984-36986649 (view UCSC Genome Browser custom track)
               

               Alignm length:
               358
               

               Alignm identity:
               257
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               64, 0
               

               Conread position:
               89-447
               

               Cow position:
               chr11:41986011-41986358 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               246
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               75, 0
               

               Conread position:
               89-468
               

               Cow position:
               chr11:15504147-15503766 (view UCSC Genome Browser custom track)
               

               Alignm length:
               384
               

               Alignm identity:
               277
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               70, 262
               

               Conread position:
               89-469
               

               Cow position:
               chr11:48041998-48042389 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               278
               

               Alignm E-value:
               3.9937e-43
               

               Alignm gaps (pig, cow):
               33, 87
               

               Conread position:
               89-472
               

               Cow position:
               chr11:38236286-38235898 (view UCSC Genome Browser custom track)
               

               Alignm length:
               399
               

               Alignm identity:
               274
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               74, 86
               

               Conread position:
               89-473
               

               Cow position:
               chr11:4732377-4731998 (view UCSC Genome Browser custom track)
               

               Alignm length:
               387
               

               Alignm identity:
               287
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               67, 75
               

               Conread position:
               89-473
               

               Cow position:
               chr11:17889696-17890063 (view UCSC Genome Browser custom track)
               

               Alignm length:
               386
               

               Alignm identity:
               268
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               171, 77
               

               Conread position:
               89-473
               

               Cow position:
               chr11:18371404-18371770 (view UCSC Genome Browser custom track)
               

               Alignm length:
               391
               

               Alignm identity:
               260
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               75, 96
               

               Conread position:
               89-473
               

               Cow position:
               chr11:20602262-20601899 (view UCSC Genome Browser custom track)
               

               Alignm length:
               388
               

               Alignm identity:
               280
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               65, 107
               

               Conread position:
               89-473
               

               Cow position:
               chr11:23251559-23251944 (view UCSC Genome Browser custom track)
               

               Alignm length:
               392
               

               Alignm identity:
               274
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               165, 19
               

               Conread position:
               89-473
               

               Cow position:
               chr11:30925191-30924805 (view UCSC Genome Browser custom track)
               

               Alignm length:
               407
               

               Alignm identity:
               276
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               77, 137
               

               Conread position:
               89-473
               

               Cow position:
               chr11:33349666-33350042 (view UCSC Genome Browser custom track)
               

               Alignm length:
               387
               

               Alignm identity:
               277
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               77, 96
               

               Conread position:
               89-473
               

               Cow position:
               chr11:53778651-53778276 (view UCSC Genome Browser custom track)
               

               Alignm length:
               385
               

               Alignm identity:
               288
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               85, 0
               

               Conread position:
               89-473
               

               Cow position:
               chr11:71168555-71168915 (view UCSC Genome Browser custom track)
               

               Alignm length:
               385
               

               Alignm identity:
               275
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               76, 0
               

               Conread position:
               90-347
               

               Cow position:
               chr11:39462657-39462402 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               189
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               74, 87
               

               Conread position:
               90-385
               

               Cow position:
               chr11:3726322-3726033 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               220
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               41, 37
               

               Conread position:
               90-473
               

               Cow position:
               chr11:58588380-58588003 (view UCSC Genome Browser custom track)
               

               Alignm length:
               385
               

               Alignm identity:
               284
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               293, 86
               

               Conread position:
               90-473
               

               Cow position:
               chr11:66896764-66897140 (view UCSC Genome Browser custom track)
               

               Alignm length:
               386
               

               Alignm identity:
               265
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               220, 84
               

               Conread position:
               91-393
               

               Cow position:
               chr11:30597026-30596736 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               214
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               15, 23
               

               Conread position:
               91-415
               

               Cow position:
               chr11:56654588-56654266 (view UCSC Genome Browser custom track)
               

               Alignm length:
               329
               

               Alignm identity:
               225
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               79, 173
               

               Conread position:
               91-473
               

               Cow position:
               chr11:33293746-33294132 (view UCSC Genome Browser custom track)
               

               Alignm length:
               389
               

               Alignm identity:
               272
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               88, 75
               

               Conread position:
               92-322
               

               Cow position:
               chr11:20684540-20684770 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               164
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               28, 40
               

               Conread position:
               92-393
               

               Cow position:
               chr11:83397937-83397644 (view UCSC Genome Browser custom track)
               

               Alignm length:
               305
               

               Alignm identity:
               210
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               170, 81
               

               Conread position:
               92-406
               

               Cow position:
               chr11:53773713-53773399 (view UCSC Genome Browser custom track)
               

               Alignm length:
               318
               

               Alignm identity:
               216
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               75, 170
               

               Conread position:
               92-412
               

               Cow position:
               chr11:21549512-21549216 (view UCSC Genome Browser custom track)
               

               Alignm length:
               321
               

               Alignm identity:
               222
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               65, 0
               

               Conread position:
               92-417
               

               Cow position:
               chr11:2788425-2788095 (view UCSC Genome Browser custom track)
               

               Alignm length:
               336
               

               Alignm identity:
               232
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               74, 232
               

               Conread position:
               92-417
               

               Cow position:
               chr11:22931939-22932246 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               231
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               71, 142
               

               Conread position:
               92-422
               

               Cow position:
               chr11:8988198-8988519 (view UCSC Genome Browser custom track)
               

               Alignm length:
               334
               

               Alignm identity:
               248
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               112, 72
               

               Conread position:
               92-431
               

               Cow position:
               chr11:85723729-85723403 (view UCSC Genome Browser custom track)
               

               Alignm length:
               340
               

               Alignm identity:
               240
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               74, 0
               

               Conread position:
               92-434
               

               Cow position:
               chr11:46747829-46748170 (view UCSC Genome Browser custom track)
               

               Alignm length:
               347
               

               Alignm identity:
               242
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               73, 113
               

               Conread position:
               92-469
               

               Cow position:
               chr11:7924557-7924921 (view UCSC Genome Browser custom track)
               

               Alignm length:
               378
               

               Alignm identity:
               269
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               107, 0
               

               Conread position:
               92-473
               

               Cow position:
               chr11:10095375-10095002 (view UCSC Genome Browser custom track)
               

               Alignm length:
               384
               

               Alignm identity:
               282
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               254, 82
               

               Conread position:
               92-473
               

               Cow position:
               chr11:80787875-80788251 (view UCSC Genome Browser custom track)
               

               Alignm length:
               384
               

               Alignm identity:
               266
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               85, 74
               

               Conread position:
               95-306
               

               Cow position:
               chr11:60143272-60143476 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               153
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               70, 135
               

               Conread position:
               95-365
               

               Cow position:
               chr11:33348158-33348417 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               191
               

               Alignm E-value:
               6e-35
               

               Alignm gaps (pig, cow):
               55, 0
               

               Conread position:
               95-398
               

               Cow position:
               chr11:36799278-36799561 (view UCSC Genome Browser custom track)
               

               Alignm length:
               305
               

               Alignm identity:
               213
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               69, 79
               

               Conread position:
               95-403
               

               Cow position:
               chr11:19247171-19247466 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               226
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               69, 15
               

               Conread position:
               95-438
               

               Cow position:
               chr11:8147870-8148196 (view UCSC Genome Browser custom track)
               

               Alignm length:
               349
               

               Alignm identity:
               237
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               291, 58
               

               Conread position:
               95-443
               

               Cow position:
               chr11:71868574-71868914 (view UCSC Genome Browser custom track)
               

               Alignm length:
               351
               

               Alignm identity:
               245
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               161, 71
               

               Conread position:
               95-463
               

               Cow position:
               chr11:13500044-13499684 (view UCSC Genome Browser custom track)
               

               Alignm length:
               371
               

               Alignm identity:
               274
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               69, 45
               

               Conread position:
               95-473
               

               Cow position:
               chr11:23128511-23128892 (view UCSC Genome Browser custom track)
               

               Alignm length:
               395
               

               Alignm identity:
               267
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               85, 71
               

               Conread position:
               95-473
               

               Cow position:
               chr11:27386310-27386680 (view UCSC Genome Browser custom track)
               

               Alignm length:
               381
               

               Alignm identity:
               268
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               69, 192
               

               Conread position:
               95-473
               

               Cow position:
               chr11:42359143-42358784 (view UCSC Genome Browser custom track)
               

               Alignm length:
               381
               

               Alignm identity:
               257
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               70, 82
               

               Conread position:
               95-473
               

               Cow position:
               chr11:49152977-49152600 (view UCSC Genome Browser custom track)
               

               Alignm length:
               394
               

               Alignm identity:
               274
               

               Alignm E-value:
               3.9937e-43
               

               Alignm gaps (pig, cow):
               288, 11
               

               Conread position:
               96-309
               

               Cow position:
               chr11:83687406-83687608 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               153
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               92, 80
               

               Conread position:
               96-463
               

               Cow position:
               chr11:59902918-59902564 (view UCSC Genome Browser custom track)
               

               Alignm length:
               368
               

               Alignm identity:
               250
               

               Alignm E-value:
               3.9937e-43
               

               Alignm gaps (pig, cow):
               64, 0
               

               Conread position:
               96-473
               

               Cow position:
               chr11:64029235-64029596 (view UCSC Genome Browser custom track)
               

               Alignm length:
               379
               

               Alignm identity:
               274
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 78
               

               Conread position:
               97-309
               

               Cow position:
               chr11:38670708-38670502 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               149
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               22, 0
               

               Conread position:
               97-393
               

               Cow position:
               chr11:171675-171957 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               204
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               117, 86
               

               Conread position:
               97-401
               

               Cow position:
               chr11:34032175-34032464 (view UCSC Genome Browser custom track)
               

               Alignm length:
               305
               

               Alignm identity:
               218
               

               Alignm E-value:
               3.9937e-43
               

               Alignm gaps (pig, cow):
               79, 0
               

               Conread position:
               99-473
               

               Cow position:
               chr11:2309898-2309532 (view UCSC Genome Browser custom track)
               

               Alignm length:
               381
               

               Alignm identity:
               273
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 76
               

               Conread position:
               106-348
               

               Cow position:
               chr11:18373093-18372861 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               166
               

               Alignm E-value:
               7e-26
               

               Alignm gaps (pig, cow):
               54, 0
               

               Conread position:
               107-473
               

               Cow position:
               chr11:1485858-1486209 (view UCSC Genome Browser custom track)
               

               Alignm length:
               369
               

               Alignm identity:
               262
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               277, 57
               

               Conread position:
               112-467
               

               Cow position:
               chr11:18066816-18067175 (view UCSC Genome Browser custom track)
               

               Alignm length:
               368
               

               Alignm identity:
               246
               

               Alignm E-value:
               6e-35
               

               Alignm gaps (pig, cow):
               115, 208
               

               Conread position:
               112-469
               

               Cow position:
               chr11:58990514-58990174 (view UCSC Genome Browser custom track)
               

               Alignm length:
               358
               

               Alignm identity:
               264
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               52, 0
               

               Conread position:
               112-473
               

               Cow position:
               chr11:75480008-75480375 (view UCSC Genome Browser custom track)
               

               Alignm length:
               379
               

               Alignm identity:
               261
               

               Alignm E-value:
               7e-37
               

               Alignm gaps (pig, cow):
               52, 148
               

               Conread position:
               113-485
               

               Cow position:
               chr11:53130824-53130462 (view UCSC Genome Browser custom track)
               

               Alignm length:
               375
               

               Alignm identity:
               274
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               52, 64
               

               Conread position:
               115-473
               

               Cow position:
               chr11:53147524-53147880 (view UCSC Genome Browser custom track)
               

               Alignm length:
               366
               

               Alignm identity:
               251
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               54, 105
               

               Conread position:
               123-473
               

               Cow position:
               chr11:81605629-81605297 (view UCSC Genome Browser custom track)
               

               Alignm length:
               352
               

               Alignm identity:
               211
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               43, 9
               

               Conread position:
               128-417
               

               Cow position:
               chr11:35149156-35148884 (view UCSC Genome Browser custom track)
               

               Alignm length:
               290
               

               Alignm identity:
               206
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               7, 0
               

               Conread position:
               134-432
               

               Cow position:
               chr11:65857850-65857558 (view UCSC Genome Browser custom track)
               

               Alignm length:
               300
               

               Alignm identity:
               209
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               135, 51
               

               Conread position:
               135-336
               

               Cow position:
               chr11:70600826-70601027 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               140
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               43, 130
               

               Conread position:
               135-417
               

               Cow position:
               chr11:9221737-9222010 (view UCSC Genome Browser custom track)
               

               Alignm length:
               284
               

               Alignm identity:
               208
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               43, 31
               

               Conread position:
               136-473
               

               Cow position:
               chr11:71846357-71846689 (view UCSC Genome Browser custom track)
               

               Alignm length:
               339
               

               Alignm identity:
               252
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               7, 31
               

               Conread position:
               143-417
               

               Cow position:
               chr11:40258429-40258682 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               194
               

               Alignm E-value:
               9e-29
               

               Alignm gaps (pig, cow):
               118, 23
               

               Conread position:
               160-473
               

               Cow position:
               chr11:34413061-34412759 (view UCSC Genome Browser custom track)
               

               Alignm length:
               314
               

               Alignm identity:
               221
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               14, 0
               

               Conread position:
               162-469
               

               Cow position:
               chr11:40467154-40467460 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               231
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               185, 0
               

               Conread position:
               183-446
               

               Cow position:
               chr11:50112132-50111878 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               200
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               24, 66
               

               Conread position:
               188-383
               

               Cow position:
               chr11:2832732-2832921 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               142
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               134, 68
               

               Conread position:
               188-416
               

               Cow position:
               chr11:63518949-63518730 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               169
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               222, 45
               

               Conread position:
               190-445
               

               Cow position:
               chr11:35238770-35238516 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               192
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               157, 0
               

               Conread position:
               190-473
               

               Cow position:
               chr11:25337012-25336731 (view UCSC Genome Browser custom track)
               

               Alignm length:
               288
               

               Alignm identity:
               208
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               216, 59
               

               Conread position:
               195-444
               

               Cow position:
               chr11:7315196-7315436 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               184
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               21, 0
               

               Conread position:
               196-472
               

               Cow position:
               chr11:8525181-8525442 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               199
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               62, 0
               

               Conread position:
               217-454
               

               Cow position:
               chr11:51756227-51755994 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               176
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               183, 81
               

               Conread position:
               86-416
               

               Cow position:
               chr12:3056150-3055831 (view UCSC Genome Browser custom track)
               

               Alignm length:
               335
               

               Alignm identity:
               241
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               70, 75
               

               Conread position:
               88-299
               

               Cow position:
               chr12:11587789-11587576 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               148
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               172, 95
               

               Conread position:
               88-312
               

               Cow position:
               chr12:10491288-10491072 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               163
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               7, 90
               

               Conread position:
               88-359
               

               Cow position:
               chr12:23574780-23574524 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               192
               

               Alignm E-value:
               6e-30
               

               Alignm gaps (pig, cow):
               6, 87
               

               Conread position:
               88-478
               

               Cow position:
               chr12:7000588-7000969 (view UCSC Genome Browser custom track)
               

               Alignm length:
               406
               

               Alignm identity:
               269
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               319, 86
               

               Conread position:
               89-325
               

               Cow position:
               chr12:45680291-45680054 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               169
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               115, 75
               

               Conread position:
               89-333
               

               Cow position:
               chr12:31948129-31947902 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               170
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               133, 74
               

               Conread position:
               89-335
               

               Cow position:
               chr12:33976213-33975975 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               165
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               222, 76
               

               Conread position:
               89-346
               

               Cow position:
               chr12:37190329-37190083 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               180
               

               Alignm E-value:
               6e-30
               

               Alignm gaps (pig, cow):
               76, 86
               

               Conread position:
               89-348
               

               Cow position:
               chr12:4162349-4162607 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               179
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               75, 143
               

               Conread position:
               89-388
               

               Cow position:
               chr12:30661936-30662225 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               218
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               275, 76
               

               Conread position:
               89-414
               

               Cow position:
               chr12:4866831-4866515 (view UCSC Genome Browser custom track)
               

               Alignm length:
               328
               

               Alignm identity:
               232
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               74, 95
               

               Conread position:
               89-414
               

               Cow position:
               chr12:6410721-6411029 (view UCSC Genome Browser custom track)
               

               Alignm length:
               326
               

               Alignm identity:
               231
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               76, 0
               

               Conread position:
               89-416
               

               Cow position:
               chr12:8943210-8943523 (view UCSC Genome Browser custom track)
               

               Alignm length:
               328
               

               Alignm identity:
               243
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               64, 0
               

               Conread position:
               89-416
               

               Cow position:
               chr12:42160545-42160856 (view UCSC Genome Browser custom track)
               

               Alignm length:
               331
               

               Alignm identity:
               230
               

               Alignm E-value:
               4e-38
               

               Alignm gaps (pig, cow):
               258, 73
               

               Conread position:
               89-416
               

               Cow position:
               chr12:44517724-44518042 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               226
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               313, 77
               

               Conread position:
               89-428
               

               Cow position:
               chr12:19664518-19664830 (view UCSC Genome Browser custom track)
               

               Alignm length:
               340
               

               Alignm identity:
               230
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               64, 0
               

               Conread position:
               89-446
               

               Cow position:
               chr12:34465990-34466329 (view UCSC Genome Browser custom track)
               

               Alignm length:
               365
               

               Alignm identity:
               254
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               77, 60
               

               Conread position:
               89-454
               

               Cow position:
               chr12:7978051-7977709 (view UCSC Genome Browser custom track)
               

               Alignm length:
               369
               

               Alignm identity:
               261
               

               Alignm E-value:
               7.9874e-44
               

               Alignm gaps (pig, cow):
               75, 17
               

               Conread position:
               89-469
               

               Cow position:
               chr12:17881875-17881516 (view UCSC Genome Browser custom track)
               

               Alignm length:
               382
               

               Alignm identity:
               272
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               148, 77
               

               Conread position:
               89-469
               

               Cow position:
               chr12:19154600-19154964 (view UCSC Genome Browser custom track)
               

               Alignm length:
               384
               

               Alignm identity:
               260
               

               Alignm E-value:
               4e-38
               

               Alignm gaps (pig, cow):
               24, 42
               

               Conread position:
               89-469
               

               Cow position:
               chr12:19508545-19508925 (view UCSC Genome Browser custom track)
               

               Alignm length:
               385
               

               Alignm identity:
               268
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               79, 262
               

               Conread position:
               89-469
               

               Cow position:
               chr12:22515718-22516092 (view UCSC Genome Browser custom track)
               

               Alignm length:
               383
               

               Alignm identity:
               273
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               75, 121
               

               Conread position:
               89-473
               

               Cow position:
               chr12:6210144-6210527 (view UCSC Genome Browser custom track)
               

               Alignm length:
               398
               

               Alignm identity:
               279
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               101, 76
               

               Conread position:
               89-473
               

               Cow position:
               chr12:6241333-6240947 (view UCSC Genome Browser custom track)
               

               Alignm length:
               393
               

               Alignm identity:
               283
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               75, 111
               

               Conread position:
               89-473
               

               Cow position:
               chr12:35310671-35311033 (view UCSC Genome Browser custom track)
               

               Alignm length:
               385
               

               Alignm identity:
               265
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               74, 0
               

               Conread position:
               89-473
               

               Cow position:
               chr12:36313866-36313506 (view UCSC Genome Browser custom track)
               

               Alignm length:
               385
               

               Alignm identity:
               274
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               77, 0
               

               Conread position:
               89-473
               

               Cow position:
               chr12:40910275-40910650 (view UCSC Genome Browser custom track)
               

               Alignm length:
               386
               

               Alignm identity:
               287
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               230, 105
               

               Conread position:
               92-341
               

               Cow position:
               chr12:18963917-18964158 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               165
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               75, 0
               

               Conread position:
               92-347
               

               Cow position:
               chr12:18765962-18766216 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               186
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               73, 167
               

               Conread position:
               92-405
               

               Cow position:
               chr12:11109765-11109478 (view UCSC Genome Browser custom track)
               

               Alignm length:
               314
               

               Alignm identity:
               215
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               53, 0
               

               Conread position:
               92-406
               

               Cow position:
               chr12:9914800-9914496 (view UCSC Genome Browser custom track)
               

               Alignm length:
               316
               

               Alignm identity:
               227
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               265, 74
               

               Conread position:
               92-428
               

               Cow position:
               chr12:35771010-35771348 (view UCSC Genome Browser custom track)
               

               Alignm length:
               344
               

               Alignm identity:
               243
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               165, 74
               

               Conread position:
               92-441
               

               Cow position:
               chr12:35368653-35368309 (view UCSC Genome Browser custom track)
               

               Alignm length:
               356
               

               Alignm identity:
               257
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               319, 91
               

               Conread position:
               92-469
               

               Cow position:
               chr12:28010898-28011255 (view UCSC Genome Browser custom track)
               

               Alignm length:
               378
               

               Alignm identity:
               277
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               14, 0
               

               Conread position:
               93-473
               

               Cow position:
               chr12:45160509-45160869 (view UCSC Genome Browser custom track)
               

               Alignm length:
               383
               

               Alignm identity:
               277
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               71, 85
               

               Conread position:
               95-343
               

               Cow position:
               chr12:12579025-12579256 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               169
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               59, 0
               

               Conread position:
               95-347
               

               Cow position:
               chr12:5658069-5658311 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               174
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               69, 0
               

               Conread position:
               95-378
               

               Cow position:
               chr12:42282831-42283102 (view UCSC Genome Browser custom track)
               

               Alignm length:
               284
               

               Alignm identity:
               198
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               68, 0
               

               Conread position:
               95-416
               

               Cow position:
               chr12:37993724-37994028 (view UCSC Genome Browser custom track)
               

               Alignm length:
               322
               

               Alignm identity:
               216
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               78, 0
               

               Conread position:
               95-473
               

               Cow position:
               chr12:42181121-42181498 (view UCSC Genome Browser custom track)
               

               Alignm length:
               386
               

               Alignm identity:
               280
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               64, 172
               

               Conread position:
               96-319
               

               Cow position:
               chr12:25452440-25452655 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               157
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               101, 70
               

               Conread position:
               96-370
               

               Cow position:
               chr12:5635446-5635705 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               194
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               77, 0
               

               Conread position:
               96-473
               

               Cow position:
               chr12:27563370-27563737 (view UCSC Genome Browser custom track)
               

               Alignm length:
               383
               

               Alignm identity:
               286
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 82
               

               Conread position:
               98-388
               

               Cow position:
               chr12:34429151-34429418 (view UCSC Genome Browser custom track)
               

               Alignm length:
               291
               

               Alignm identity:
               200
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               76, 0
               

               Conread position:
               98-453
               

               Cow position:
               chr12:34473616-34473947 (view UCSC Genome Browser custom track)
               

               Alignm length:
               361
               

               Alignm identity:
               242
               

               Alignm E-value:
               9e-24
               

               Alignm gaps (pig, cow):
               68, 38
               

               Conread position:
               99-340
               

               Cow position:
               chr12:28748946-28748706 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               173
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               81, 67
               

               Conread position:
               99-414
               

               Cow position:
               chr12:3955769-3956076 (view UCSC Genome Browser custom track)
               

               Alignm length:
               324
               

               Alignm identity:
               223
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               110, 54
               

               Conread position:
               112-366
               

               Cow position:
               chr12:23798092-23797850 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               174
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               197, 52
               

               Conread position:
               113-466
               

               Cow position:
               chr12:31228562-31228232 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               246
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               60, 0
               

               Conread position:
               114-473
               

               Cow position:
               chr12:36012624-36012981 (view UCSC Genome Browser custom track)
               

               Alignm length:
               374
               

               Alignm identity:
               249
               

               Alignm E-value:
               6e-30
               

               Alignm gaps (pig, cow):
               51, 61
               

               Conread position:
               115-416
               

               Cow position:
               chr12:8868887-8869185 (view UCSC Genome Browser custom track)
               

               Alignm length:
               305
               

               Alignm identity:
               220
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               220, 145
               

               Conread position:
               117-428
               

               Cow position:
               chr12:26782870-26782566 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               225
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 67
               

               Conread position:
               117-472
               

               Cow position:
               chr12:2286569-2286221 (view UCSC Genome Browser custom track)
               

               Alignm length:
               357
               

               Alignm identity:
               258
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               317, 55
               

               Conread position:
               117-473
               

               Cow position:
               chr12:11583376-11583046 (view UCSC Genome Browser custom track)
               

               Alignm length:
               358
               

               Alignm identity:
               262
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               265, 47
               

               Conread position:
               142-345
               

               Cow position:
               chr12:38511875-38512075 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               151
               

               Alignm E-value:
               9e-34
               

               Alignm gaps (pig, cow):
               115, 164
               

               Conread position:
               178-376
               

               Cow position:
               chr12:28804922-28804730 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               146
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               8, 0
               

               Conread position:
               178-473
               

               Cow position:
               chr12:26868866-26869156 (view UCSC Genome Browser custom track)
               

               Alignm length:
               297
               

               Alignm identity:
               233
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 83
               

               Conread position:
               183-473
               

               Cow position:
               chr12:21314945-21314662 (view UCSC Genome Browser custom track)
               

               Alignm length:
               291
               

               Alignm identity:
               211
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 0
               

               Conread position:
               217-415
               

               Cow position:
               chr12:3076728-3076925 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               159
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               130, 0
               

               Conread position:
               218-440
               

               Cow position:
               chr12:31925536-31925327 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               176
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               31, 0
               

               Conread position:
               218-473
               

               Cow position:
               chr12:20316625-20316866 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               193
               

               Alignm E-value:
               7.9874e-44
               

               Alignm gaps (pig, cow):
               31, 0
               

               Conread position:
               219-444
               

               Cow position:
               chr12:9465568-9465791 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               174
               

               Alignm E-value:
               8.40779e-45
               

               Alignm gaps (pig, cow):
               149, 97
               

               Conread position:
               248-468
               

               Cow position:
               chr12:31060119-31060335 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               170
               

               Alignm E-value:
               8.40779e-45
               

               Alignm gaps (pig, cow):
               99, 0
               

               Conread position:
               19-469
               

               Cow position:
               chr13:7663557-7663126 (view UCSC Genome Browser custom track)
               

               Alignm length:
               455
               

               Alignm identity:
               314
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 35
               

               Conread position:
               87-346
               

               Cow position:
               chr13:56605547-56605289 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               179
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               69, 115
               

               Conread position:
               87-473
               

               Cow position:
               chr13:43762099-43762478 (view UCSC Genome Browser custom track)
               

               Alignm length:
               396
               

               Alignm identity:
               272
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               76, 87
               

               Conread position:
               88-304
               

               Cow position:
               chr13:52929643-52929852 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               153
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               77, 0
               

               Conread position:
               88-406
               

               Cow position:
               chr13:10924989-10924666 (view UCSC Genome Browser custom track)
               

               Alignm length:
               333
               

               Alignm identity:
               236
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               78, 204
               

               Conread position:
               88-459
               

               Cow position:
               chr13:12546976-12546614 (view UCSC Genome Browser custom track)
               

               Alignm length:
               373
               

               Alignm identity:
               268
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               231, 79
               

               Conread position:
               89-285
               

               Cow position:
               chr13:25380896-25381086 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               138
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               71, 0
               

               Conread position:
               89-312
               

               Cow position:
               chr13:18999468-18999693 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               160
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               75, 135
               

               Conread position:
               89-324
               

               Cow position:
               chr13:25495938-25496169 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               154
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               87, 0
               

               Conread position:
               89-343
               

               Cow position:
               chr13:20231259-20231022 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               187
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               65, 72
               

               Conread position:
               89-347
               

               Cow position:
               chr13:13338789-13339046 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               177
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               89, 0
               

               Conread position:
               89-347
               

               Cow position:
               chr13:17338362-17338616 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               182
               

               Alignm E-value:
               6e-28
               

               Alignm gaps (pig, cow):
               77, 71
               

               Conread position:
               89-347
               

               Cow position:
               chr13:19188234-19188486 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               181
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               228, 85
               

               Conread position:
               89-363
               

               Cow position:
               chr13:8652509-8652240 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               200
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               77, 183
               

               Conread position:
               89-366
               

               Cow position:
               chr13:24230147-24230413 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               198
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               253, 75
               

               Conread position:
               89-367
               

               Cow position:
               chr13:52055659-52055394 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               195
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               84, 0
               

               Conread position:
               89-370
               

               Cow position:
               chr13:59170586-59170861 (view UCSC Genome Browser custom track)
               

               Alignm length:
               286
               

               Alignm identity:
               197
               

               Alignm E-value:
               9e-32
               

               Alignm gaps (pig, cow):
               165, 77
               

               Conread position:
               89-385
               

               Cow position:
               chr13:43919328-43919036 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               195
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               143, 85
               

               Conread position:
               89-391
               

               Cow position:
               chr13:37593013-37592710 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               224
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               110, 219
               

               Conread position:
               89-413
               

               Cow position:
               chr13:3315742-3315426 (view UCSC Genome Browser custom track)
               

               Alignm length:
               326
               

               Alignm identity:
               232
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               293, 92
               

               Conread position:
               89-415
               

               Cow position:
               chr13:12614186-12614509 (view UCSC Genome Browser custom track)
               

               Alignm length:
               331
               

               Alignm identity:
               236
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               75, 14
               

               Conread position:
               89-416
               

               Cow position:
               chr13:11060921-11061232 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               233
               

               Alignm E-value:
               6e-38
               

               Alignm gaps (pig, cow):
               120, 82
               

               Conread position:
               89-433
               

               Cow position:
               chr13:19023915-19023572 (view UCSC Genome Browser custom track)
               

               Alignm length:
               349
               

               Alignm identity:
               247
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               112, 97
               

               Conread position:
               89-468
               

               Cow position:
               chr13:9142212-9142584 (view UCSC Genome Browser custom track)
               

               Alignm length:
               390
               

               Alignm identity:
               279
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               76, 98
               

               Conread position:
               89-469
               

               Cow position:
               chr13:9975141-9974763 (view UCSC Genome Browser custom track)
               

               Alignm length:
               385
               

               Alignm identity:
               271
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               181, 84
               

               Conread position:
               89-469
               

               Cow position:
               chr13:25435190-25434826 (view UCSC Genome Browser custom track)
               

               Alignm length:
               383
               

               Alignm identity:
               272
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               83, 92
               

               Conread position:
               89-473
               

               Cow position:
               chr13:1043036-1042649 (view UCSC Genome Browser custom track)
               

               Alignm length:
               391
               

               Alignm identity:
               293
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               74, 172
               

               Conread position:
               89-473
               

               Cow position:
               chr13:2413962-2414331 (view UCSC Genome Browser custom track)
               

               Alignm length:
               386
               

               Alignm identity:
               265
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               332, 75
               

               Conread position:
               89-473
               

               Cow position:
               chr13:21275792-21276162 (view UCSC Genome Browser custom track)
               

               Alignm length:
               385
               

               Alignm identity:
               280
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               85, 0
               

               Conread position:
               89-473
               

               Cow position:
               chr13:34375192-34375562 (view UCSC Genome Browser custom track)
               

               Alignm length:
               391
               

               Alignm identity:
               271
               

               Alignm E-value:
               4.2039e-45
               

               Alignm gaps (pig, cow):
               92, 231
               

               Conread position:
               89-473
               

               Cow position:
               chr13:36771489-36771115 (view UCSC Genome Browser custom track)
               

               Alignm length:
               390
               

               Alignm identity:
               283
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               76, 51
               

               Conread position:
               89-473
               

               Cow position:
               chr13:37381734-37382118 (view UCSC Genome Browser custom track)
               

               Alignm length:
               390
               

               Alignm identity:
               281
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               111, 78
               

               Conread position:
               89-473
               

               Cow position:
               chr13:46515994-46516369 (view UCSC Genome Browser custom track)
               

               Alignm length:
               395
               

               Alignm identity:
               275
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               106, 77
               

               Conread position:
               89-473
               

               Cow position:
               chr13:60509187-60508816 (view UCSC Genome Browser custom track)
               

               Alignm length:
               388
               

               Alignm identity:
               271
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               76, 89
               

               Conread position:
               91-347
               

               Cow position:
               chr13:11643874-11644115 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               181
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               72, 87
               

               Conread position:
               91-473
               

               Cow position:
               chr13:17855307-17855679 (view UCSC Genome Browser custom track)
               

               Alignm length:
               383
               

               Alignm identity:
               271
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               83, 0
               

               Conread position:
               92-295
               

               Cow position:
               chr13:25579254-25579053 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               138
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               136, 0
               

               Conread position:
               92-309
               

               Cow position:
               chr13:20128602-20128813 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               154
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               152, 81
               

               Conread position:
               92-321
               

               Cow position:
               chr13:4420278-4420508 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               169
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               70, 92
               

               Conread position:
               92-367
               

               Cow position:
               chr13:61188469-61188736 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               188
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               74, 0
               

               Conread position:
               92-473
               

               Cow position:
               chr13:12045402-12045034 (view UCSC Genome Browser custom track)
               

               Alignm length:
               386
               

               Alignm identity:
               275
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               74, 93
               

               Conread position:
               92-473
               

               Cow position:
               chr13:40651870-40652240 (view UCSC Genome Browser custom track)
               

               Alignm length:
               382
               

               Alignm identity:
               268
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               94, 0
               

               Conread position:
               92-473
               

               Cow position:
               chr13:41253557-41253933 (view UCSC Genome Browser custom track)
               

               Alignm length:
               394
               

               Alignm identity:
               264
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               314, 64
               

               Conread position:
               92-482
               

               Cow position:
               chr13:6974097-6974481 (view UCSC Genome Browser custom track)
               

               Alignm length:
               396
               

               Alignm identity:
               284
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               290, 84
               

               Conread position:
               95-304
               

               Cow position:
               chr13:28552527-28552739 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               145
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               69, 0
               

               Conread position:
               95-380
               

               Cow position:
               chr13:2192650-2192922 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               196
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               18, 72
               

               Conread position:
               95-387
               

               Cow position:
               chr13:5263342-5263065 (view UCSC Genome Browser custom track)
               

               Alignm length:
               295
               

               Alignm identity:
               213
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               231, 69
               

               Conread position:
               95-468
               

               Cow position:
               chr13:17821331-17820958 (view UCSC Genome Browser custom track)
               

               Alignm length:
               381
               

               Alignm identity:
               258
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               22, 39
               

               Conread position:
               95-469
               

               Cow position:
               chr13:42113958-42114320 (view UCSC Genome Browser custom track)
               

               Alignm length:
               375
               

               Alignm identity:
               265
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               57, 0
               

               Conread position:
               95-473
               

               Cow position:
               chr13:45604477-45604105 (view UCSC Genome Browser custom track)
               

               Alignm length:
               385
               

               Alignm identity:
               267
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               313, 71
               

               Conread position:
               96-464
               

               Cow position:
               chr13:25695828-25695470 (view UCSC Genome Browser custom track)
               

               Alignm length:
               369
               

               Alignm identity:
               258
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               70, 0
               

               Conread position:
               97-452
               

               Cow position:
               chr13:13306033-13306390 (view UCSC Genome Browser custom track)
               

               Alignm length:
               361
               

               Alignm identity:
               257
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               54, 64
               

               Conread position:
               98-473
               

               Cow position:
               chr13:17158936-17158557 (view UCSC Genome Browser custom track)
               

               Alignm length:
               384
               

               Alignm identity:
               263
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 81
               

               Conread position:
               98-473
               

               Cow position:
               chr13:53536366-53535996 (view UCSC Genome Browser custom track)
               

               Alignm length:
               382
               

               Alignm identity:
               244
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               68, 58
               

               Conread position:
               99-428
               

               Cow position:
               chr13:19393234-19393547 (view UCSC Genome Browser custom track)
               

               Alignm length:
               331
               

               Alignm identity:
               230
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               65, 111
               

               Conread position:
               99-472
               

               Cow position:
               chr13:17622231-17622590 (view UCSC Genome Browser custom track)
               

               Alignm length:
               374
               

               Alignm identity:
               274
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               74, 0
               

               Conread position:
               100-417
               

               Cow position:
               chr13:9665003-9665326 (view UCSC Genome Browser custom track)
               

               Alignm length:
               326
               

               Alignm identity:
               218
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               94, 99
               

               Conread position:
               101-417
               

               Cow position:
               chr13:33517978-33517673 (view UCSC Genome Browser custom track)
               

               Alignm length:
               319
               

               Alignm identity:
               233
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               65, 14
               

               Conread position:
               102-306
               

               Cow position:
               chr13:14870478-14870674 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               148
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               64, 0
               

               Conread position:
               103-309
               

               Cow position:
               chr13:39367910-39368103 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               146
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               68, 0
               

               Conread position:
               115-417
               

               Cow position:
               chr13:52284767-52285066 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               219
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               81, 61
               

               Conread position:
               115-440
               

               Cow position:
               chr13:6079453-6079145 (view UCSC Genome Browser custom track)
               

               Alignm length:
               326
               

               Alignm identity:
               239
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               56, 0
               

               Conread position:
               115-469
               

               Cow position:
               chr13:19178231-19178576 (view UCSC Genome Browser custom track)
               

               Alignm length:
               356
               

               Alignm identity:
               254
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               49, 61
               

               Conread position:
               120-473
               

               Cow position:
               chr13:61170754-61170417 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               258
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               54, 0
               

               Conread position:
               178-413
               

               Cow position:
               chr13:60599921-60599695 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               173
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               108, 0
               

               Conread position:
               178-473
               

               Cow position:
               chr13:32949982-32949699 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               226
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 0
               

               Conread position:
               178-473
               

               Cow position:
               chr13:34507896-34508183 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               231
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 0
               

               Conread position:
               178-494
               

               Cow position:
               chr13:32017506-32017194 (view UCSC Genome Browser custom track)
               

               Alignm length:
               318
               

               Alignm identity:
               244
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               297, 74
               

               Conread position:
               183-472
               

               Cow position:
               chr13:21708210-21708487 (view UCSC Genome Browser custom track)
               

               Alignm length:
               291
               

               Alignm identity:
               219
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               31, 20
               

               Conread position:
               186-473
               

               Cow position:
               chr13:6606995-6606713 (view UCSC Genome Browser custom track)
               

               Alignm length:
               290
               

               Alignm identity:
               213
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               116, 54
               

               Conread position:
               190-401
               

               Cow position:
               chr13:18551476-18551683 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               160
               

               Alignm E-value:
               6e-39
               

               Alignm gaps (pig, cow):
               109, 0
               

               Conread position:
               217-473
               

               Cow position:
               chr13:37947944-37947708 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               193
               

               Alignm E-value:
               7e-40
               

               Alignm gaps (pig, cow):
               70, 0
               

               Conread position:
               222-473
               

               Cow position:
               chr13:60436822-60436576 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               190
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               85, 0
               

               Conread position:
               239-467
               

               Cow position:
               chr13:13344034-13344256 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               173
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               208, 75
               

               Conread position:
               243-386
               

               Cow position:
               chr13:31581667-31581526 (view UCSC Genome Browser custom track)
               

               Alignm length:
               144
               

               Alignm identity:
               108
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               43, 0
               

               Conread position:
               247-420
               

               Cow position:
               chr13:8195168-8195335 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               133
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               52, 0
               

               Conread position:
               38-313
               

               Cow position:
               chr14:1868442-1868174 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               185
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               27, 16
               

               Conread position:
               85-345
               

               Cow position:
               chr14:25002020-25002274 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               180
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               5, 83
               

               Conread position:
               85-473
               

               Cow position:
               chr14:33538950-33538564 (view UCSC Genome Browser custom track)
               

               Alignm length:
               401
               

               Alignm identity:
               293
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               65, 211
               

               Conread position:
               88-408
               

               Cow position:
               chr14:49929755-49929435 (view UCSC Genome Browser custom track)
               

               Alignm length:
               328
               

               Alignm identity:
               216
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               77, 210
               

               Conread position:
               88-416
               

               Cow position:
               chr14:27305133-27305464 (view UCSC Genome Browser custom track)
               

               Alignm length:
               335
               

               Alignm identity:
               209
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               43, 178
               

               Conread position:
               89-269
               

               Cow position:
               chr14:35503352-35503533 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               136
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               56, 63
               

               Conread position:
               89-269
               

               Cow position:
               chr14:40754257-40754074 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               135
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               75, 86
               

               Conread position:
               89-314
               

               Cow position:
               chr14:19394351-19394570 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               156
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               85, 0
               

               Conread position:
               89-332
               

               Cow position:
               chr14:15313551-15313782 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               170
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               67, 72
               

               Conread position:
               89-367
               

               Cow position:
               chr14:28115197-28114924 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               204
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               94, 0
               

               Conread position:
               89-370
               

               Cow position:
               chr14:33309513-33309248 (view UCSC Genome Browser custom track)
               

               Alignm length:
               282
               

               Alignm identity:
               198
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               87, 0
               

               Conread position:
               89-385
               

               Cow position:
               chr14:11043501-11043211 (view UCSC Genome Browser custom track)
               

               Alignm length:
               300
               

               Alignm identity:
               211
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               104, 97
               

               Conread position:
               89-387
               

               Cow position:
               chr14:10609670-10609969 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               212
               

               Alignm E-value:
               9e-34
               

               Alignm gaps (pig, cow):
               75, 147
               

               Conread position:
               89-388
               

               Cow position:
               chr14:6190940-6190658 (view UCSC Genome Browser custom track)
               

               Alignm length:
               300
               

               Alignm identity:
               202
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               39, 0
               

               Conread position:
               89-388
               

               Cow position:
               chr14:19129496-19129791 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               227
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               88, 176
               

               Conread position:
               89-403
               

               Cow position:
               chr14:5222301-5221992 (view UCSC Genome Browser custom track)
               

               Alignm length:
               316
               

               Alignm identity:
               212
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               75, 95
               

               Conread position:
               89-415
               

               Cow position:
               chr14:35018763-35018449 (view UCSC Genome Browser custom track)
               

               Alignm length:
               328
               

               Alignm identity:
               227
               

               Alignm E-value:
               5.99994e-41
               

               Alignm gaps (pig, cow):
               75, 95
               

               Conread position:
               89-416
               

               Cow position:
               chr14:19594147-19593832 (view UCSC Genome Browser custom track)
               

               Alignm length:
               333
               

               Alignm identity:
               232
               

               Alignm E-value:
               4e-37
               

               Alignm gaps (pig, cow):
               76, 140
               

               Conread position:
               89-432
               

               Cow position:
               chr14:24236815-24237142 (view UCSC Genome Browser custom track)
               

               Alignm length:
               345
               

               Alignm identity:
               241
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               242, 119
               

               Conread position:
               89-439
               

               Cow position:
               chr14:28795662-28796009 (view UCSC Genome Browser custom track)
               

               Alignm length:
               353
               

               Alignm identity:
               249
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               342, 160
               

               Conread position:
               89-439
               

               Cow position:
               chr14:39618386-39618046 (view UCSC Genome Browser custom track)
               

               Alignm length:
               352
               

               Alignm identity:
               247
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               74, 86
               

               Conread position:
               89-453
               

               Cow position:
               chr14:17238342-17238707 (view UCSC Genome Browser custom track)
               

               Alignm length:
               373
               

               Alignm identity:
               263
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               75, 88
               

               Conread position:
               89-472
               

               Cow position:
               chr14:43249578-43249948 (view UCSC Genome Browser custom track)
               

               Alignm length:
               384
               

               Alignm identity:
               281
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 0
               

               Conread position:
               89-473
               

               Cow position:
               chr14:12520312-12519967 (view UCSC Genome Browser custom track)
               

               Alignm length:
               386
               

               Alignm identity:
               265
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               75, 86
               

               Conread position:
               89-473
               

               Cow position:
               chr14:16237522-16237142 (view UCSC Genome Browser custom track)
               

               Alignm length:
               393
               

               Alignm identity:
               292
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               76, 148
               

               Conread position:
               89-473
               

               Cow position:
               chr14:25403945-25403580 (view UCSC Genome Browser custom track)
               

               Alignm length:
               386
               

               Alignm identity:
               276
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               382, 78
               

               Conread position:
               89-473
               

               Cow position:
               chr14:37103200-37103564 (view UCSC Genome Browser custom track)
               

               Alignm length:
               385
               

               Alignm identity:
               264
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               129, 0
               

               Conread position:
               89-473
               

               Cow position:
               chr14:37883926-37883552 (view UCSC Genome Browser custom track)
               

               Alignm length:
               387
               

               Alignm identity:
               272
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               321, 131
               

               Conread position:
               89-473
               

               Cow position:
               chr14:41479672-41479294 (view UCSC Genome Browser custom track)
               

               Alignm length:
               385
               

               Alignm identity:
               280
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               77, 0
               

               Conread position:
               89-473
               

               Cow position:
               chr14:47609592-47609239 (view UCSC Genome Browser custom track)
               

               Alignm length:
               385
               

               Alignm identity:
               263
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               94, 0
               

               Conread position:
               89-484
               

               Cow position:
               chr14:38168682-38169052 (view UCSC Genome Browser custom track)
               

               Alignm length:
               396
               

               Alignm identity:
               275
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               77, 0
               

               Conread position:
               92-346
               

               Cow position:
               chr14:12324412-12324663 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               173
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               137, 216
               

               Conread position:
               92-358
               

               Cow position:
               chr14:12667722-12667982 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               185
               

               Alignm E-value:
               8e-33
               

               Alignm gaps (pig, cow):
               105, 85
               

               Conread position:
               92-360
               

               Cow position:
               chr14:29029822-29030080 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               184
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               124, 9
               

               Conread position:
               92-366
               

               Cow position:
               chr14:34983863-34984122 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               189
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               68, 0
               

               Conread position:
               92-383
               

               Cow position:
               chr14:50055391-50055676 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               198
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               139, 61
               

               Conread position:
               92-386
               

               Cow position:
               chr14:3868435-3868152 (view UCSC Genome Browser custom track)
               

               Alignm length:
               295
               

               Alignm identity:
               198
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               94, 0
               

               Conread position:
               92-464
               

               Cow position:
               chr14:20010318-20009962 (view UCSC Genome Browser custom track)
               

               Alignm length:
               374
               

               Alignm identity:
               251
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               72, 83
               

               Conread position:
               92-473
               

               Cow position:
               chr14:44742388-44742022 (view UCSC Genome Browser custom track)
               

               Alignm length:
               382
               

               Alignm identity:
               272
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 0
               

               Conread position:
               94-473
               

               Cow position:
               chr14:7558445-7558074 (view UCSC Genome Browser custom track)
               

               Alignm length:
               387
               

               Alignm identity:
               274
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               75, 7
               

               Conread position:
               95-343
               

               Cow position:
               chr14:26191108-26190860 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               169
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               59, 80
               
95-388UCSC Genome Browser
               Conread position:
               
               

               Cow position:
               chr14:36289801-36289536 (view  custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               208
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               11, 0
               
95-414UCSC Genome Browser
               
               
               
Conread position: 

               
               
               
Cow position: chr14:26097697-26097382 (view  custom track)

               
               
               
Alignm length: 320

               
               
               
Alignm identity: 218

               
               
               
Alignm E-value: 1.99965e-42

               
               
               
Alignm gaps (pig, cow): 88, 0
95-435UCSC Genome Browser
               
               
               
Conread position: 

               
               
               
Cow position: chr14:18485258-18484914 (view  custom track)

               
               
               
Alignm length: 346

               
               
               
Alignm identity: 239

               
               
               
Alignm E-value: 0

               
               
               
Alignm gaps (pig, cow): 140, 257

               
               
               Conread position:95-472
               
               
               Cow position:chr14:50362790-50363160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):167, 69

               
               
               Conread position:95-473
               
               
               Cow position:chr14:33326399-33326030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 71

               
               
               Conread position:95-474
               
               
               Cow position:chr14:35420768-35420394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 92

               
               
               Conread position:97-324
               
               
               Cow position:chr14:29592728-29592502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):66, 31

               
               
               Conread position:97-473
               
               
               Cow position:chr14:6599959-6599588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 99

               
               
               Conread position:98-411
               
               
               Cow position:chr14:5630161-5630466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):294, 78

               
               
               Conread position:100-420
               
               
               Cow position:chr14:25385886-25385580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:106-393
               
               
               Cow position:chr14:35498498-35498216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:202
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):119, 155

               
               
               Conread position:107-473
               
               
               Cow position:chr14:43453172-43452815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 70

               
               
               Conread position:112-315
               
               
               Cow position:chr14:41966257-41966451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:142
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:112-318
               
               
               Cow position:chr14:14580882-14581080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:153
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:112-388
               
               
               Cow position:chr14:24981468-24981734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:200
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:112-473
               
               
               Cow position:chr14:8101803-8102141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:244
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:113-412
               
               
               Cow position:chr14:7482070-7482359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:215
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):82, 53

               
               
               Conread position:115-347
               
               
               Cow position:chr14:33643764-33643551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:115-473
               
               
               Cow position:chr14:7959792-7960125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:264
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):21, 41

               
               
               Conread position:130-417
               
               
               Cow position:chr14:14280442-14280726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):58, 36

               
               
               Conread position:177-404
               
               
               Cow position:chr14:36151482-36151688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:177-406
               
               
               Cow position:chr14:19624161-19624388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:170
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):121, 83

               
               
               Conread position:178-473
               
               
               Cow position:chr14:106500-106211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:179-464
               
               
               Cow position:chr14:46965637-46965916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:207
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):233, 81

               
               
               Conread position:183-469
               
               
               Cow position:chr14:6490628-6490341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 136

               
               
               Conread position:183-472
               
               
               Cow position:chr14:20468025-20467749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:183-472
               
               
               Cow position:chr14:46735386-46735680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 166

               
               
               Conread position:187-417
               
               
               Cow position:chr14:19996402-19996627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):128, 0

               
               
               Conread position:190-370
               
               
               Cow position:chr14:50504263-50504087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:129
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):24, 118

               
               
               Conread position:195-361
               
               
               Cow position:chr14:26470721-26470882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:215-469
               
               
               Cow position:chr14:27866024-27865777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:187
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):131, 0

               
               
               Conread position:218-460
               
               
               Cow position:chr14:19206975-19207216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:186
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):134, 0

               
               
               Conread position:224-469
               
               
               Cow position:chr14:47507221-47507465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:186
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 0

               
               
               Conread position:246-381
               
               
               Cow position:chr14:37441312-37441182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:104
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:246-381
               
               
               Cow position:chr14:37442958-37442828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:104
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:246-415
               
               
               Cow position:chr14:19985963-19986131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:130
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:247-406
               
               
               Cow position:chr14:4868351-4868195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:117
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:247-473
               
               
               Cow position:chr14:13634566-13634341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:173
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):167, 100

               
               
               Conread position:88-367
               
               
               Cow position:chr15:26573415-26573692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:204
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):76, 87

               
               
               Conread position:88-402
               
               
               Cow position:chr15:47821852-47822140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:218
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):312, 18

               
               
               Conread position:88-417
               
               
               Cow position:chr15:4534945-4535262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 40

               
               
               Conread position:88-473
               
               
               Cow position:chr15:37381661-37382033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 6

               
               
               Conread position:88-473
               
               
               Cow position:chr15:43626505-43626869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 77

               
               
               Conread position:89-306
               
               
               Cow position:chr15:5726362-5726573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:89-312
               
               
               Cow position:chr15:39316805-39316580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:164
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):75, 128

               
               
               Conread position:89-347
               
               
               Cow position:chr15:9526441-9526182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:174
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):88, 77

               
               
               Conread position:89-367
               
               
               Cow position:chr15:225767-225498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):242, 77

               
               
               Conread position:89-386
               
               
               Cow position:chr15:49922171-49922463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:211
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):148, 75

               
               
               Conread position:89-387
               
               
               Cow position:chr15:50322631-50322920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:89-398
               
               
               Cow position:chr15:35945566-35945878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):77, 86

               
               
               Conread position:89-403
               
               
               Cow position:chr15:39621375-39621679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 85

               
               
               Conread position:89-408
               
               
               Cow position:chr15:35417588-35417276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):16, 22

               
               
               Conread position:89-409
               
               
               Cow position:chr15:12723126-12723425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):23, 57

               
               
               Conread position:89-409
               
               
               Cow position:chr15:27973180-27972868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:89-414
               
               
               Cow position:chr15:21893816-21894134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 21

               
               
               Conread position:89-416
               
               
               Cow position:chr15:2953097-2952776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:232
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):82, 147

               
               
               Conread position:89-417
               
               
               Cow position:chr15:23768220-23767910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:89-467
               
               
               Cow position:chr15:22939288-22938931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:269
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):90, 77

               
               
               Conread position:89-473
               
               
               Cow position:chr15:6905570-6905963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 75

               
               
               Conread position:89-473
               
               
               Cow position:chr15:15880963-15881332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 72

               
               
               Conread position:89-473
               
               
               Cow position:chr15:17233230-17233595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:258
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:89-473
               
               
               Cow position:chr15:20370418-20370061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:272
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):40, 61

               
               
               Conread position:89-473
               
               
               Cow position:chr15:20472511-20472135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):137, 0

               
               
               Conread position:89-473
               
               
               Cow position:chr15:32979996-32979623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 49

               
               
               Conread position:90-342
               
               
               Cow position:chr15:41045444-41045686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:179
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):76, 89

               
               
               Conread position:91-381
               
               
               Cow position:chr15:11995988-11995706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:207
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:91-416
               
               
               Cow position:chr15:1297778-1298090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:91-473
               
               
               Cow position:chr15:42142898-42143261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):230, 72

               
               
               Conread position:92-294
               
               
               Cow position:chr15:10512232-10512034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:142
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):87, 74

               
               
               Conread position:92-295
               
               
               Cow position:chr15:12870824-12870626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:92-312
               
               
               Cow position:chr15:12655876-12655657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):85, 61

               
               
               Conread position:92-313
               
               
               Cow position:chr15:4295803-4296020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):99, 75

               
               
               Conread position:92-315
               
               
               Cow position:chr15:11560475-11560257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:150
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):115, 82

               
               
               Conread position:92-345
               
               
               Cow position:chr15:18671416-18671157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):73, 86

               
               
               Conread position:92-365
               
               
               Cow position:chr15:1804295-1804028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:192
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):160, 61

               
               
               Conread position:92-400
               
               
               Cow position:chr15:31857631-31857930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:92-473
               
               
               Cow position:chr15:21608680-21608320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:252
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:92-473
               
               
               Cow position:chr15:52482788-52482418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):323, 72

               
               
               Conread position:92-473
               
               
               Cow position:chr15:53164061-53164430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:92-500
               
               
               Cow position:chr15:41000030-40999614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 16

               
               
               Conread position:94-401
               
               
               Cow position:chr15:10245955-10245670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:95-345
               
               
               Cow position:chr15:21821881-21821636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):221, 71

               
               
               Conread position:95-347
               
               
               Cow position:chr15:16667460-16667213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):69, 123

               
               
               Conread position:95-415
               
               
               Cow position:chr15:21941803-21941496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:222
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):216, 113

               
               
               Conread position:95-473
               
               
               Cow position:chr15:1301179-1301551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:95-473
               
               
               Cow position:chr15:6227139-6226786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:261
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):316, 78

               
               
               Conread position:95-473
               
               
               Cow position:chr15:24797767-24797390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):164, 68

               
               
               Conread position:96-416
               
               
               Cow position:chr15:51427782-51427469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:224
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):59, 83

               
               
               Conread position:96-417
               
               
               Cow position:chr15:1083332-1083025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:222
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:96-469
               
               
               Cow position:chr15:53353504-53353148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:254
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):56, 67

               
               
               Conread position:98-469
               
               
               Cow position:chr15:7962123-7962495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:257
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):66, 86

               
               
               Conread position:100-384
               
               
               Cow position:chr15:14856419-14856155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:100-416
               
               
               Cow position:chr15:41620143-41619832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 67

               
               
               Conread position:101-417
               
               
               Cow position:chr15:33303372-33303688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:220
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):65, 245

               
               
               Conread position:102-393
               
               
               Cow position:chr15:41225513-41225232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:106-473
               
               
               Cow position:chr15:236789-237139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 80

               
               
               Conread position:107-473
               
               
               Cow position:chr15:45361-45009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:113-386
               
               
               Cow position:chr15:47105102-47105361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):55, 47

               
               
               Conread position:115-321
               
               
               Cow position:chr15:12441762-12441561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):107, 62

               
               
               Conread position:115-339
               
               
               Cow position:chr15:32324145-32323927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):50, 80

               
               
               Conread position:115-347
               
               
               Cow position:chr15:36773635-36773408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):103, 51

               
               
               Conread position:115-409
               
               
               Cow position:chr15:22136746-22137030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:213
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):48, 62

               
               
               Conread position:115-469
               
               
               Cow position:chr15:46610995-46611325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:252
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:115-473
               
               
               Cow position:chr15:26912013-26911670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:130-368
               
               
               Cow position:chr15:10845797-10846028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:130-473
               
               
               Cow position:chr15:32204821-32204496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:236
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):57, 29

               
               
               Conread position:142-452
               
               
               Cow position:chr15:36621499-36621809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 150

               
               
               Conread position:178-386
               
               
               Cow position:chr15:38394542-38394744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:151
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:178-473
               
               
               Cow position:chr15:33314325-33314036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:179-326
               
               
               Cow position:chr15:18322807-18322661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:186-446
               
               
               Cow position:chr15:24128782-24129031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:187-473
               
               
               Cow position:chr15:6082511-6082232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 38

               
               
               Conread position:190-419
               
               
               Cow position:chr15:33525553-33525785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):99, 8

               
               
               Conread position:190-482
               
               
               Cow position:chr15:4676873-4676586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 114

               
               
               Conread position:195-367
               
               
               Cow position:chr15:6168380-6168210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:197-417
               
               
               Cow position:chr15:9062454-9062239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:171
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:206-473
               
               
               Cow position:chr15:28924614-28924358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:217-394
               
               
               Cow position:chr15:4501139-4501312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:226-473
               
               
               Cow position:chr15:18605561-18605792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:228-362
               
               
               Cow position:chr15:39832294-39832161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:247-473
               
               
               Cow position:chr15:27123364-27123139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:42-393
               
               
               Cow position:chr16:30096032-30096372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:238
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):22, 7

               
               
               Conread position:75-473
               
               
               Cow position:chr16:31978121-31978510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:86-416
               
               
               Cow position:chr16:52889354-52889675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 88

               
               
               Conread position:88-304
               
               
               Cow position:chr16:29712473-29712262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:156
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):121, 58

               
               
               Conread position:88-387
               
               
               Cow position:chr16:45535231-45534947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):78, 6

               
               
               Conread position:88-417
               
               
               Cow position:chr16:48145348-48145665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:230
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):31, 56

               
               
               Conread position:88-435
               
               
               Cow position:chr16:12633938-12633620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:247
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):55, 51

               
               
               Conread position:88-473
               
               
               Cow position:chr16:23472803-23472421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 96

               
               
               Conread position:88-473
               
               
               Cow position:chr16:38663655-38664030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 73

               
               
               Conread position:89-264
               
               
               Cow position:chr16:56796613-56796785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:89-280
               
               
               Cow position:chr16:19047381-19047572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:89-308
               
               
               Cow position:chr16:7550021-7549806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):142, 0

               
               
               Conread position:89-310
               
               
               Cow position:chr16:25380442-25380660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:156
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):42, 78

               
               
               Conread position:89-312
               
               
               Cow position:chr16:6319256-6319032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):37, 176

               
               
               Conread position:89-313
               
               
               Cow position:chr16:31269193-31268974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):76, 115

               
               
               Conread position:89-315
               
               
               Cow position:chr16:50521530-50521309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:159
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:89-318
               
               
               Cow position:chr16:4902641-4902417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:162
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):74, 107

               
               
               Conread position:89-318
               
               
               Cow position:chr16:52133464-52133687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:89-341
               
               
               Cow position:chr16:591758-592007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:89-341
               
               
               Cow position:chr16:42200952-42200699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:174
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):174, 86

               
               
               Conread position:89-341
               
               
               Cow position:chr16:54084089-54083843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:180
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:89-343
               
               
               Cow position:chr16:56787723-56787971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:172
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:89-347
               
               
               Cow position:chr16:16552614-16552365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):58, 84

               
               
               Conread position:89-347
               
               
               Cow position:chr16:17626982-17626733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:189
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:89-347
               
               
               Cow position:chr16:52275076-52275327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):76, 95

               
               
               Conread position:89-370
               
               
               Cow position:chr16:42444209-42443935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):117, 76

               
               
               Conread position:89-371
               
               
               Cow position:chr16:52636331-52636602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):74, 86

               
               
               Conread position:89-375
               
               
               Cow position:chr16:22773032-22772744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):77, 89

               
               
               Conread position:89-379
               
               
               Cow position:chr16:50289205-50288929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):75, 172

               
               
               Conread position:89-384
               
               
               Cow position:chr16:54664748-54665036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:207
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):74, 14

               
               
               Conread position:89-385
               
               
               Cow position:chr16:594171-594465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):67, 226

               
               
               Conread position:89-386
               
               
               Cow position:chr16:32327711-32327417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:215
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):76, 113

               
               
               Conread position:89-389
               
               
               Cow position:chr16:21905215-21904925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:89-391
               
               
               Cow position:chr16:7152118-7152414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:218
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):197, 87

               
               
               Conread position:89-391
               
               
               Cow position:chr16:53048605-53048311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:206
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:89-399
               
               
               Cow position:chr16:45702919-45703224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):166, 61

               
               
               Conread position:89-405
               
               
               Cow position:chr16:26372897-26373205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 14

               
               
               Conread position:89-405
               
               
               Cow position:chr16:43661503-43661198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:227
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):88, 126

               
               
               Conread position:89-409
               
               
               Cow position:chr16:35195560-35195868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):214, 77

               
               
               Conread position:89-409
               
               
               Cow position:chr16:47245642-47245330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:223
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):77, 98

               
               
               Conread position:89-410
               
               
               Cow position:chr16:20025494-20025185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:89-412
               
               
               Cow position:chr16:14242422-14242114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:232
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):37, 41

               
               
               Conread position:89-415
               
               
               Cow position:chr16:11102768-11103090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 75

               
               
               Conread position:89-416
               
               
               Cow position:chr16:17745889-17745569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 178

               
               
               Conread position:89-416
               
               
               Cow position:chr16:24672305-24672624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:89-417
               
               
               Cow position:chr16:22842004-22842319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:232
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):79, 109

               
               
               Conread position:89-417
               
               
               Cow position:chr16:30515536-30515846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:230
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):86, 107

               
               
               Conread position:89-420
               
               
               Cow position:chr16:11619802-11619485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:237
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):77, 97

               
               
               Conread position:89-432
               
               
               Cow position:chr16:15960237-15960575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):171, 0

               
               
               Conread position:89-437
               
               
               Cow position:chr16:34168639-34168309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 77

               
               
               Conread position:89-442
               
               
               Cow position:chr16:51869692-51869347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 87

               
               
               Conread position:89-447
               
               
               Cow position:chr16:35343420-35343771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:89-459
               
               
               Cow position:chr16:2223344-2223712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 178

               
               
               Conread position:89-463
               
               
               Cow position:chr16:7077690-7078050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 77

               
               
               Conread position:89-464
               
               
               Cow position:chr16:820303-819942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):171, 0

               
               
               Conread position:89-469
               
               
               Cow position:chr16:9497215-9497591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):113, 87

               
               
               Conread position:89-469
               
               
               Cow position:chr16:13611401-13611771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:273
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):101, 85

               
               
               Conread position:89-469
               
               
               Cow position:chr16:26676633-26676995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 63

               
               
               Conread position:89-469
               
               
               Cow position:chr16:42340249-42339887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):288, 77

               
               
               Conread position:89-473
               
               
               Cow position:chr16:600999-600623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:89-473
               
               
               Cow position:chr16:7665690-7665305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):325, 85

               
               
               Conread position:89-473
               
               
               Cow position:chr16:8025802-8026163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:89-473
               
               
               Cow position:chr16:17142987-17142614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):332, 76

               
               
               Conread position:89-473
               
               
               Cow position:chr16:21450900-21450532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:89-473
               
               
               Cow position:chr16:26610692-26610320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 86

               
               
               Conread position:89-473
               
               
               Cow position:chr16:29655378-29655006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 88

               
               
               Conread position:89-473
               
               
               Cow position:chr16:41590830-41590466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:267
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):76, 110

               
               
               Conread position:89-473
               
               
               Cow position:chr16:44744080-44744471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:277
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):178, 77

               
               
               Conread position:89-473
               
               
               Cow position:chr16:48086815-48087192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 89

               
               
               Conread position:89-473
               
               
               Cow position:chr16:49169328-49169701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 174

               
               
               Conread position:89-473
               
               
               Cow position:chr16:49229715-49230092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:268
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):75, 98

               
               
               Conread position:89-473
               
               
               Cow position:chr16:51112827-51113196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:90-467
               
               
               Cow position:chr16:30143154-30143530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):166, 84

               
               
               Conread position:90-473
               
               
               Cow position:chr16:35188305-35187932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):322, 77

               
               
               Conread position:91-376
               
               
               Cow position:chr16:12360925-12361197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):78, 12

               
               
               Conread position:91-460
               
               
               Cow position:chr16:14361154-14360798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 60

               
               
               Conread position:92-283
               
               
               Cow position:chr16:40446311-40446115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):73, 14

               
               
               Conread position:92-329
               
               
               Cow position:chr16:38119400-38119628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):14, 19

               
               
               Conread position:92-354
               
               
               Cow position:chr16:49404109-49404359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):74, 86

               
               
               Conread position:92-370
               
               
               Cow position:chr16:8322932-8323205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:203
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):72, 83

               
               
               Conread position:92-436
               
               
               Cow position:chr16:3246155-3246477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:237
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:92-438
               
               
               Cow position:chr16:43308511-43308847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 44

               
               
               Conread position:92-464
               
               
               Cow position:chr16:18757789-18758153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 48

               
               
               Conread position:92-468
               
               
               Cow position:chr16:5725517-5725163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:259
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):72, 104

               
               
               Conread position:92-468
               
               
               Cow position:chr16:28922823-28922472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 19

               
               
               Conread position:92-469
               
               
               Cow position:chr16:11775002-11775366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):290, 74

               
               
               Conread position:92-471
               
               
               Cow position:chr16:1548828-1549194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):210, 61

               
               
               Conread position:92-472
               
               
               Cow position:chr16:4145113-4144739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):319, 39

               
               
               Conread position:92-473
               
               
               Cow position:chr16:24826123-24825745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):293, 165

               
               
               Conread position:92-473
               
               
               Cow position:chr16:52854982-52855338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:262
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:92-473
               
               
               Cow position:chr16:53553669-53554034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 84

               
               
               Conread position:94-383
               
               
               Cow position:chr16:26342314-26342045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:95-292
               
               
               Cow position:chr16:7583444-7583251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:95-321
               
               
               Cow position:chr16:31348716-31348942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):21, 168

               
               
               Conread position:95-325
               
               
               Cow position:chr16:7442054-7442281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):151, 13

               
               
               Conread position:95-334
               
               
               Cow position:chr16:8076455-8076692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):70, 169

               
               
               Conread position:95-376
               
               
               Cow position:chr16:5351795-5352056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:194
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):119, 33

               
               
               Conread position:95-385
               
               
               Cow position:chr16:14568442-14568719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:210
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:95-388
               
               
               Cow position:chr16:56082318-56082597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:200
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:95-401
               
               
               Cow position:chr16:56522423-56522722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:210
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):146, 91

               
               
               Conread position:95-406
               
               
               Cow position:chr16:7429426-7429123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:217
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):162, 195

               
               
               Conread position:95-417
               
               
               Cow position:chr16:37117122-37116808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 70

               
               
               Conread position:95-469
               
               
               Cow position:chr16:675537-675184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:256
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):34, 48

               
               
               Conread position:95-473
               
               
               Cow position:chr16:35758249-35757895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:258
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:96-417
               
               
               Cow position:chr16:46521936-46521636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):89, 77

               
               
               Conread position:97-390
               
               
               Cow position:chr16:8193498-8193205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:217
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):67, 88

               
               
               Conread position:97-400
               
               
               Cow position:chr16:50282387-50282680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):8, 70

               
               
               Conread position:97-433
               
               
               Cow position:chr16:22804553-22804863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:237
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):67, 53

               
               
               Conread position:98-473
               
               
               Cow position:chr16:13195295-13195650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:251
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):67, 155

               
               
               Conread position:98-473
               
               
               Cow position:chr16:42969882-42970253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 81

               
               
               Conread position:98-473
               
               
               Cow position:chr16:56831697-56832062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:100-406
               
               
               Cow position:chr16:238310-238006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):66, 161

               
               
               Conread position:103-383
               
               
               Cow position:chr16:33790789-33791076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):42, 65

               
               
               Conread position:112-469
               
               
               Cow position:chr16:13791547-13791187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 104

               
               
               Conread position:112-473
               
               
               Cow position:chr16:29159154-29158810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:113-412
               
               
               Cow position:chr16:48385370-48385662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 62

               
               
               Conread position:113-467
               
               
               Cow position:chr16:5654539-5654200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 48

               
               
               Conread position:115-412
               
               
               Cow position:chr16:23058409-23058697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:200
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:117-323
               
               
               Cow position:chr16:34153542-34153752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):146, 66

               
               
               Conread position:131-473
               
               
               Cow position:chr16:26501169-26500842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:242
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):47, 34

               
               
               Conread position:142-417
               
               
               Cow position:chr16:53613310-53613033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:205
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):22, 105

               
               
               Conread position:162-469
               
               
               Cow position:chr16:18496180-18496483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 99

               
               
               Conread position:162-473
               
               
               Cow position:chr16:40333345-40333643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:163-386
               
               
               Cow position:chr16:4134852-4134631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:160
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):24, 10

               
               
               Conread position:164-431
               
               
               Cow position:chr16:29380240-29379974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 147

               
               
               Conread position:189-417
               
               
               Cow position:chr16:24403695-24403464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 167

               
               
               Conread position:217-383
               
               
               Cow position:chr16:2396258-2396095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:247-435
               
               
               Cow position:chr16:38903538-38903718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:247-445
               
               
               Cow position:chr16:43724690-43724496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:157
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):147, 68

               
               
               Conread position:247-473
               
               
               Cow position:chr16:3333323-3333103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:179
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):166, 74

               
               
               Conread position:252-472
               
               
               Cow position:chr16:45173652-45173869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:172
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:19-376
               
               
               Cow position:chr17:8836790-8837133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:236
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):9, 30

               
               
               Conread position:73-469
               
               
               Cow position:chr17:923986-923603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):184, 15

               
               
               Conread position:87-346
               
               
               Cow position:chr17:17682809-17683053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):117, 85

               
               
               Conread position:89-275
               
               
               Cow position:chr17:27202953-27203132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:89-301
               
               
               Cow position:chr17:23798374-23798168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):75, 88

               
               
               Conread position:89-305
               
               
               Cow position:chr17:31856766-31856545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):142, 0

               
               
               Conread position:89-312
               
               
               Cow position:chr17:20884616-20884398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:89-325
               
               
               Cow position:chr17:26233737-26233964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:89-338
               
               
               Cow position:chr17:6329208-6328961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:180
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:89-345
               
               
               Cow position:chr17:14762029-14762273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:89-347
               
               
               Cow position:chr17:7142954-7142708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:184
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:89-358
               
               
               Cow position:chr17:27058464-27058720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:179
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:89-402
               
               
               Cow position:chr17:20932424-20932126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 88

               
               
               Conread position:89-406
               
               
               Cow position:chr17:25097548-25097249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:89-410
               
               
               Cow position:chr17:21738781-21739102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):167, 78

               
               
               Conread position:89-416
               
               
               Cow position:chr17:17410386-17410074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:226
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):89, 77

               
               
               Conread position:89-465
               
               
               Cow position:chr17:11277935-11278295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):159, 170

               
               
               Conread position:89-469
               
               
               Cow position:chr17:21335599-21335974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 101

               
               
               Conread position:89-469
               
               
               Cow position:chr17:32027359-32027739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 78

               
               
               Conread position:89-473
               
               
               Cow position:chr17:11618677-11618299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 17

               
               
               Conread position:89-473
               
               
               Cow position:chr17:12289316-12289700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 157

               
               
               Conread position:89-473
               
               
               Cow position:chr17:14248917-14249314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:277
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):15, 22

               
               
               Conread position:89-473
               
               
               Cow position:chr17:15664770-15664388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 232

               
               
               Conread position:89-473
               
               
               Cow position:chr17:17222433-17222064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:89-473
               
               
               Cow position:chr17:21959595-21959959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:89-473
               
               
               Cow position:chr17:23063812-23063433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 14

               
               
               Conread position:89-473
               
               
               Cow position:chr17:34079018-34079379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 61

               
               
               Conread position:89-473
               
               
               Cow position:chr17:40288907-40289281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):237, 84

               
               
               Conread position:89-484
               
               
               Cow position:chr17:18860628-18861010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):297, 87

               
               
               Conread position:92-302
               
               
               Cow position:chr17:24559380-24559178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:92-318
               
               
               Cow position:chr17:1113978-1113754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):162, 73

               
               
               Conread position:92-410
               
               
               Cow position:chr17:20870008-20870311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):80, 89

               
               
               Conread position:92-469
               
               
               Cow position:chr17:16446346-16446706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 71

               
               
               Conread position:92-473
               
               
               Cow position:chr17:30665362-30664998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:93-473
               
               
               Cow position:chr17:22564282-22563915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 176

               
               
               Conread position:94-414
               
               
               Cow position:chr17:7132352-7132677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 178

               
               
               Conread position:95-304
               
               
               Cow position:chr17:20874483-20874273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):119, 58

               
               
               Conread position:95-342
               
               
               Cow position:chr17:12946262-12946516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):55, 126

               
               
               Conread position:95-345
               
               
               Cow position:chr17:25916982-25916738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):102, 78

               
               
               Conread position:95-369
               
               
               Cow position:chr17:24149271-24149000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:196
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):61, 66

               
               
               Conread position:95-454
               
               
               Cow position:chr17:11296736-11296376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 176

               
               
               Conread position:95-469
               
               
               Cow position:chr17:21973043-21973408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 170

               
               
               Conread position:101-435
               
               
               Cow position:chr17:11101722-11102037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:101-473
               
               
               Cow position:chr17:27679152-27679525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 77

               
               
               Conread position:106-291
               
               
               Cow position:chr17:17266815-17266998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):56, 69

               
               
               Conread position:107-473
               
               
               Cow position:chr17:21292967-21293326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):159, 87

               
               
               Conread position:112-312
               
               
               Cow position:chr17:32349141-32348949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):51, 63

               
               
               Conread position:112-343
               
               
               Cow position:chr17:267515-267736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):154, 64

               
               
               Conread position:112-387
               
               
               Cow position:chr17:43323695-43323952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:190
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):53, 63

               
               
               Conread position:112-396
               
               
               Cow position:chr17:44232642-44232924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:202
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):251, 150

               
               
               Conread position:112-415
               
               
               Cow position:chr17:41289952-41290240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:220
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:112-416
               
               
               Cow position:chr17:28540100-28539812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:223
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):271, 54

               
               
               Conread position:113-484
               
               
               Cow position:chr17:45881974-45881614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:233
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):147, 0

               
               
               Conread position:115-473
               
               
               Cow position:chr17:1081060-1080723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:240
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):147, 51

               
               
               Conread position:115-473
               
               
               Cow position:chr17:5898465-5898808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:255
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):176, 51

               
               
               Conread position:115-500
               
               
               Cow position:chr17:1783537-1783914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 71

               
               
               Conread position:127-402
               
               
               Cow position:chr17:966692-966949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:158-417
               
               
               Cow position:chr17:5745227-5745468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:165-424
               
               
               Cow position:chr17:27162667-27162419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:186
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):257, 30

               
               
               Conread position:176-473
               
               
               Cow position:chr17:3843488-3843211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:178-473
               
               
               Cow position:chr17:6156047-6155760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:178-473
               
               
               Cow position:chr17:30539246-30539530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):211, 82

               
               
               Conread position:179-473
               
               
               Cow position:chr17:32651625-32651335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 136

               
               
               Conread position:187-349
               
               
               Cow position:chr17:31701440-31701279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:190-468
               
               
               Cow position:chr17:37163526-37163805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):221, 157

               
               
               Conread position:217-322
               
               
               Cow position:chr17:40673355-40673251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:87
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:217-473
               
               
               Cow position:chr17:20083546-20083793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:248-464
               
               
               Cow position:chr17:5740491-5740294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:163
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:249-347
               
               
               Cow position:chr17:26797871-26797969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:99
               
               
               Alignm identity:83
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:86-328
               
               
               Cow position:chr18:32430566-32430795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:88-447
               
               
               Cow position:chr18:52637509-52637862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):292, 86

               
               
               Conread position:89-264
               
               
               Cow position:chr18:5632287-5632112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:122
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):88, 78

               
               
               Conread position:89-285
               
               
               Cow position:chr18:50974275-50974467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:135
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:89-309
               
               
               Cow position:chr18:27109273-27109492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):178, 0

               
               
               Conread position:89-350
               
               
               Cow position:chr18:1954570-1954828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):75, 88

               
               
               Conread position:89-370
               
               
               Cow position:chr18:4495867-4496139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:189
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:89-381
               
               
               Cow position:chr18:51643346-51643662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):76, 89

               
               
               Conread position:89-383
               
               
               Cow position:chr18:10322825-10322536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:209
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:89-403
               
               
               Cow position:chr18:47525427-47525122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):77, 134

               
               
               Conread position:89-413
               
               
               Cow position:chr18:21266525-21266214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:222
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:89-429
               
               
               Cow position:chr18:26355009-26355332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:237
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):168, 85

               
               
               Conread position:89-464
               
               
               Cow position:chr18:4182168-4182532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 85

               
               
               Conread position:89-469
               
               
               Cow position:chr18:40759226-40758866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:89-472
               
               
               Cow position:chr18:11867356-11867000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 77

               
               
               Conread position:89-473
               
               
               Cow position:chr18:3180430-3180066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):313, 75

               
               
               Conread position:89-473
               
               
               Cow position:chr18:7965251-7964877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 98

               
               
               Conread position:89-473
               
               
               Cow position:chr18:14586451-14586830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):167, 77

               
               
               Conread position:89-473
               
               
               Cow position:chr18:17005279-17004900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 88

               
               
               Conread position:89-473
               
               
               Cow position:chr18:19646194-19645824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:257
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:89-473
               
               
               Cow position:chr18:20174110-20174484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 83

               
               
               Conread position:89-473
               
               
               Cow position:chr18:22120866-22121234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:89-473
               
               
               Cow position:chr18:28768385-28768013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):169, 106

               
               
               Conread position:89-473
               
               
               Cow position:chr18:29371886-29371513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 89

               
               
               Conread position:89-473
               
               
               Cow position:chr18:39662798-39662423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:273
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):129, 77

               
               
               Conread position:89-473
               
               
               Cow position:chr18:43283737-43284105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:89-474
               
               
               Cow position:chr18:37023531-37023911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 33

               
               
               Conread position:90-473
               
               
               Cow position:chr18:11377383-11377017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):185, 86

               
               
               Conread position:91-258
               
               
               Cow position:chr18:22274820-22274983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:92-301
               
               
               Cow position:chr18:346482-346689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):63, 32

               
               
               Conread position:92-306
               
               
               Cow position:chr18:36746243-36746447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):137, 74

               
               
               Conread position:92-315
               
               
               Cow position:chr18:7109146-7108924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):205, 74

               
               
               Conread position:92-328
               
               
               Cow position:chr18:3211894-3211658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):72, 175

               
               
               Conread position:92-414
               
               
               Cow position:chr18:6609842-6610153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):296, 72

               
               
               Conread position:92-468
               
               
               Cow position:chr18:56159478-56159110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):330, 74

               
               
               Conread position:92-471
               
               
               Cow position:chr18:31672496-31672855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):165, 58

               
               
               Conread position:92-473
               
               
               Cow position:chr18:4927085-4926720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:94-332
               
               
               Cow position:chr18:54056564-54056344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:95-292
               
               
               Cow position:chr18:43555511-43555703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:95-341
               
               
               Cow position:chr18:2863977-2864222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):69, 224

               
               
               Conread position:95-371
               
               
               Cow position:chr18:17649725-17649988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:194
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):54, 66

               
               
               Conread position:95-401
               
               
               Cow position:chr18:51656029-51656335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):164, 71

               
               
               Conread position:95-407
               
               
               Cow position:chr18:36098225-36097913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 173

               
               
               Conread position:95-469
               
               
               Cow position:chr18:51691449-51691818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 80

               
               
               Conread position:96-473
               
               
               Cow position:chr18:52635058-52635435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 230

               
               
               Conread position:99-421
               
               
               Cow position:chr18:16726658-16726345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:220
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):56, 23

               
               
               Conread position:100-385
               
               
               Cow position:chr18:2480664-2480376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):156, 63

               
               
               Conread position:107-411
               
               
               Cow position:chr18:20271018-20271312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:217
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):58, 68

               
               
               Conread position:112-363
               
               
               Cow position:chr18:12809851-12809615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:112-366
               
               
               Cow position:chr18:20481886-20482121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:183
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:112-473
               
               
               Cow position:chr18:7487246-7486898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):236, 61

               
               
               Conread position:112-473
               
               
               Cow position:chr18:35636350-35636701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:114-469
               
               
               Cow position:chr18:10861435-10861766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:239
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):142, 52

               
               
               Conread position:115-473
               
               
               Cow position:chr18:39001810-39002149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):267, 51

               
               
               Conread position:117-415
               
               
               Cow position:chr18:1144192-1144489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):146, 87

               
               
               Conread position:119-416
               
               
               Cow position:chr18:52632418-52632702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:219
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):190, 58

               
               
               Conread position:142-469
               
               
               Cow position:chr18:26937687-26937377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):267, 24

               
               
               Conread position:143-347
               
               
               Cow position:chr18:55715882-55716077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:142
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:144-444
               
               
               Cow position:chr18:52382668-52382372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:202
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):22, 151

               
               
               Conread position:178-469
               
               
               Cow position:chr18:20864922-20864637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 8

               
               
               Conread position:195-388
               
               
               Cow position:chr18:21773413-21773220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):40, 78

               
               
               Conread position:213-478
               
               
               Cow position:chr18:21721379-21721639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:226-431
               
               
               Cow position:chr18:4625787-4625589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:243-473
               
               
               Cow position:chr18:7966130-7965917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:184
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:247-469
               
               
               Cow position:chr18:6877753-6877979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):66, 111

               
               
               Conread position:247-473
               
               
               Cow position:chr18:46108509-46108732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:169
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:83-411
               
               
               Cow position:chr19:53371849-53372166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 69

               
               
               Conread position:85-341
               
               
               Cow position:chr19:33116642-33116391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):106, 89

               
               
               Conread position:88-312
               
               
               Cow position:chr19:25526326-25526108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:153
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):76, 145

               
               
               Conread position:88-345
               
               
               Cow position:chr19:11424273-11424515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:184
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:88-472
               
               
               Cow position:chr19:31595343-31594967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:88-473
               
               
               Cow position:chr19:23005315-23005698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 18

               
               
               Conread position:89-258
               
               
               Cow position:chr19:2221034-2221204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:119
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:89-292
               
               
               Cow position:chr19:9408728-9408527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:139
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):77, 89

               
               
               Conread position:89-321
               
               
               Cow position:chr19:53900099-53900332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:154
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):97, 213

               
               
               Conread position:89-325
               
               
               Cow position:chr19:6849154-6849390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):165, 76

               
               
               Conread position:89-345
               
               
               Cow position:chr19:32506076-32506316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):52, 86

               
               
               Conread position:89-347
               
               
               Cow position:chr19:22039815-22039563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):77, 141

               
               
               Conread position:89-347
               
               
               Cow position:chr19:34166408-34166156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:188
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):175, 23

               
               
               Conread position:89-347
               
               
               Cow position:chr19:36097262-36097013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:89-405
               
               
               Cow position:chr19:33469062-33468759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 98

               
               
               Conread position:89-417
               
               
               Cow position:chr19:36845291-36844972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 77

               
               
               Conread position:89-434
               
               
               Cow position:chr19:47118459-47118790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:89-463
               
               
               Cow position:chr19:34619987-34620357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:259
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):90, 75

               
               
               Conread position:89-469
               
               
               Cow position:chr19:12698360-12697998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 38

               
               
               Conread position:89-469
               
               
               Cow position:chr19:51400973-51401339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 17

               
               
               Conread position:89-469
               
               
               Cow position:chr19:54943010-54942648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:262
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):104, 84

               
               
               Conread position:89-473
               
               
               Cow position:chr19:268395-268018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):134, 74

               
               
               Conread position:89-473
               
               
               Cow position:chr19:23403603-23403983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 94

               
               
               Conread position:89-473
               
               
               Cow position:chr19:28014520-28014148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:89-473
               
               
               Cow position:chr19:33747891-33747520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 137

               
               
               Conread position:89-482
               
               
               Cow position:chr19:25053623-25054013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:270
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):61, 222

               
               
               Conread position:89-482
               
               
               Cow position:chr19:31874162-31873765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:274
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):40, 177

               
               
               Conread position:91-302
               
               
               Cow position:chr19:22449887-22450104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:91-473
               
               
               Cow position:chr19:42205965-42205598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:275
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):325, 38

               
               
               Conread position:92-294
               
               
               Cow position:chr19:46094598-46094798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:138
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):71, 169

               
               
               Conread position:92-298
               
               
               Cow position:chr19:4800780-4800580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:92-302
               
               
               Cow position:chr19:47859277-47859482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:92-310
               
               
               Cow position:chr19:55394939-55394731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:92-347
               
               
               Cow position:chr19:8270562-8270815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):64, 48

               
               
               Conread position:92-361
               
               
               Cow position:chr19:7158682-7158954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:193
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):74, 87

               
               
               Conread position:92-393
               
               
               Cow position:chr19:32754565-32754262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):205, 216

               
               
               Conread position:92-400
               
               
               Cow position:chr19:51185462-51185166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:218
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):294, 73

               
               
               Conread position:92-417
               
               
               Cow position:chr19:10081113-10080792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 127

               
               
               Conread position:92-445
               
               
               Cow position:chr19:18750037-18750386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):335, 65

               
               
               Conread position:92-473
               
               
               Cow position:chr19:36722350-36722002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:262
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):36, 49

               
               
               Conread position:95-309
               
               
               Cow position:chr19:11443024-11442807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):69, 172

               
               
               Conread position:95-347
               
               
               Cow position:chr19:42564180-42563924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:187
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):69, 124

               
               
               Conread position:95-410
               
               
               Cow position:chr19:30886431-30886124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:95-428
               
               
               Cow position:chr19:20622689-20622374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:235
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):69, 83

               
               
               Conread position:95-469
               
               
               Cow position:chr19:39661506-39661871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 66

               
               
               Conread position:95-473
               
               
               Cow position:chr19:7543449-7543089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 170

               
               
               Conread position:95-478
               
               
               Cow position:chr19:14253667-14253297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:98-411
               
               
               Cow position:chr19:42695028-42694717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:222
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):65, 148

               
               
               Conread position:98-473
               
               
               Cow position:chr19:35540327-35539972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):286, 67

               
               
               Conread position:101-312
               
               
               Cow position:chr19:7884609-7884406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:103-445
               
               
               Cow position:chr19:10964563-10964903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:232
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):9, 250

               
               
               Conread position:104-453
               
               
               Cow position:chr19:6417619-6417287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:247
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):60, 9

               
               
               Conread position:106-473
               
               
               Cow position:chr19:3819492-3819852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:240
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):131, 60

               
               
               Conread position:111-324
               
               
               Cow position:chr19:23463917-23464124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:144
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:111-473
               
               
               Cow position:chr19:8496277-8496633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 64

               
               
               Conread position:112-299
               
               
               Cow position:chr19:21816985-21816798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):54, 149

               
               
               Conread position:115-321
               
               
               Cow position:chr19:10173097-10173303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):41, 27

               
               
               Conread position:115-398
               
               
               Cow position:chr19:53243460-53243731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):275, 49

               
               
               Conread position:115-473
               
               
               Cow position:chr19:15863032-15863376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):294, 50

               
               
               Conread position:116-321
               
               
               Cow position:chr19:38111484-38111286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):48, 67

               
               
               Conread position:117-392
               
               
               Cow position:chr19:25851819-25852084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:199
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:117-392
               
               
               Cow position:chr19:25864911-25865176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:199
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:117-432
               
               
               Cow position:chr19:25851475-25851780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:140-435
               
               
               Cow position:chr19:4251980-4252267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 39

               
               
               Conread position:163-399
               
               
               Cow position:chr19:44125613-44125390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:175
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:177-473
               
               
               Cow position:chr19:48409466-48409183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:213
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):234, 83

               
               
               Conread position:178-315
               
               
               Cow position:chr19:9395207-9395068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:103
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:178-386
               
               
               Cow position:chr19:11534637-11534443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:157
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:178-473
               
               
               Cow position:chr19:31378647-31378948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 8

               
               
               Conread position:186-367
               
               
               Cow position:chr19:18646545-18646716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):129, 0

               
               
               Conread position:186-469
               
               
               Cow position:chr19:27348326-27348590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:190-473
               
               
               Cow position:chr19:51267837-51267573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:199-473
               
               
               Cow position:chr19:21379993-21380251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:227-416
               
               
               Cow position:chr19:35142109-35142289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:86-473
               
               
               Cow position:chr2:59396997-59397380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 115

               
               
               Conread position:88-347
               
               
               Cow position:chr2:73637118-73637373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):81, 100

               
               
               Conread position:88-428
               
               
               Cow position:chr2:13582639-13582308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 167

               
               
               Conread position:88-450
               
               
               Cow position:chr2:47090816-47090470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:255
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):66, 90

               
               
               Conread position:88-473
               
               
               Cow position:chr2:76562160-76561790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):336, 86

               
               
               Conread position:88-497
               
               
               Cow position:chr2:21681-22083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 62

               
               
               Conread position:89-296
               
               
               Cow position:chr2:54968061-54967857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):109, 75

               
               
               Conread position:89-298
               
               
               Cow position:chr2:19156131-19156337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):198, 77

               
               
               Conread position:89-312
               
               
               Cow position:chr2:26170798-26170578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):77, 71

               
               
               Conread position:89-312
               
               
               Cow position:chr2:51098032-51098257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):75, 89

               
               
               Conread position:89-312
               
               
               Cow position:chr2:67313636-67313854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:89-315
               
               
               Cow position:chr2:69199267-69199483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:89-341
               
               
               Cow position:chr2:73360060-73360301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:89-345
               
               
               Cow position:chr2:16505423-16505671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):69, 78

               
               
               Conread position:89-347
               
               
               Cow position:chr2:13000965-13000726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:177
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:89-347
               
               
               Cow position:chr2:82019074-82019319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:184
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:89-362
               
               
               Cow position:chr2:29159959-29159692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:197
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):146, 75

               
               
               Conread position:89-366
               
               
               Cow position:chr2:69823643-69823373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:200
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):13, 78

               
               
               Conread position:89-371
               
               
               Cow position:chr2:68970792-68970514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:195
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):60, 85

               
               
               Conread position:89-377
               
               
               Cow position:chr2:33531895-33532173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:193
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):55, 194

               
               
               Conread position:89-382
               
               
               Cow position:chr2:41145368-41145083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):60, 164

               
               
               Conread position:89-382
               
               
               Cow position:chr2:61136785-61136497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):188, 77

               
               
               Conread position:89-387
               
               
               Cow position:chr2:13604522-13604230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:204
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:89-387
               
               
               Cow position:chr2:50565987-50565691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:215
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):75, 175

               
               
               Conread position:89-388
               
               
               Cow position:chr2:15250235-15249947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:214
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):76, 133

               
               
               Conread position:89-393
               
               
               Cow position:chr2:39564407-39564112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:219
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):77, 88

               
               
               Conread position:89-403
               
               
               Cow position:chr2:73353845-73353537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 23

               
               
               Conread position:89-404
               
               
               Cow position:chr2:11617148-11616847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:89-405
               
               
               Cow position:chr2:17966976-17967286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:221
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):294, 51

               
               
               Conread position:89-405
               
               
               Cow position:chr2:66403878-66404181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:221
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):67, 95

               
               
               Conread position:89-406
               
               
               Cow position:chr2:33251036-33251329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:220
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):300, 75

               
               
               Conread position:89-410
               
               
               Cow position:chr2:36878165-36878476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:226
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):74, 98

               
               
               Conread position:89-410
               
               
               Cow position:chr2:49428434-49428128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):291, 114

               
               
               Conread position:89-411
               
               
               Cow position:chr2:32048533-32048229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:89-415
               
               
               Cow position:chr2:1756094-1755774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:227
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):77, 171

               
               
               Conread position:89-416
               
               
               Cow position:chr2:26102820-26102516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:89-417
               
               
               Cow position:chr2:42183425-42183106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 89

               
               
               Conread position:89-417
               
               
               Cow position:chr2:45880723-45881032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:232
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):171, 0

               
               
               Conread position:89-423
               
               
               Cow position:chr2:70539319-70539647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 77

               
               
               Conread position:89-428
               
               
               Cow position:chr2:66916653-66916999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:244
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):7, 98

               
               
               Conread position:89-435
               
               
               Cow position:chr2:54700509-54700166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 141

               
               
               Conread position:89-469
               
               
               Cow position:chr2:32264339-32264720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):165, 75

               
               
               Conread position:89-469
               
               
               Cow position:chr2:49608645-49608274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 105

               
               
               Conread position:89-469
               
               
               Cow position:chr2:69223167-69223546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:261
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):77, 92

               
               
               Conread position:89-472
               
               
               Cow position:chr2:42255488-42255111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):294, 76

               
               
               Conread position:89-472
               
               
               Cow position:chr2:56350864-56351236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 98

               
               
               Conread position:89-473
               
               
               Cow position:chr2:7524079-7524457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):258, 0

               
               
               Conread position:89-473
               
               
               Cow position:chr2:9767381-9767745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:268
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):30, 101

               
               
               Conread position:89-473
               
               
               Cow position:chr2:19212002-19212364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:89-473
               
               
               Cow position:chr2:38273603-38273219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:267
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):61, 88

               
               
               Conread position:89-473
               
               
               Cow position:chr2:44081490-44081128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 88

               
               
               Conread position:89-473
               
               
               Cow position:chr2:46293993-46294355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:89-473
               
               
               Cow position:chr2:55632829-55632454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:89-473
               
               
               Cow position:chr2:76340598-76340987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 221

               
               
               Conread position:89-473
               
               
               Cow position:chr2:85339405-85339782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 167

               
               
               Conread position:89-474
               
               
               Cow position:chr2:31355750-31355385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:89-499
               
               
               Cow position:chr2:61485676-61485290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:276
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:90-314
               
               
               Cow position:chr2:5998999-5998780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:155
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:91-386
               
               
               Cow position:chr2:36017363-36017648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:211
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):84, 26

               
               
               Conread position:91-445
               
               
               Cow position:chr2:46230712-46231059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):295, 82

               
               
               Conread position:91-469
               
               
               Cow position:chr2:39662756-39662381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 171

               
               
               Conread position:91-473
               
               
               Cow position:chr2:21644400-21644774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 49

               
               
               Conread position:92-315
               
               
               Cow position:chr2:19594772-19594548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):58, 97

               
               
               Conread position:92-333
               
               
               Cow position:chr2:13709519-13709289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:92-350
               
               
               Cow position:chr2:5130404-5130648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):72, 84

               
               
               Conread position:92-365
               
               
               Cow position:chr2:19294644-19294388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):85, 72

               
               
               Conread position:92-386
               
               
               Cow position:chr2:80963600-80963879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:92-393
               
               
               Cow position:chr2:62644637-62644358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):293, 72

               
               
               Conread position:92-411
               
               
               Cow position:chr2:76110446-76110136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:92-468
               
               
               Cow position:chr2:76313818-76314170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:92-473
               
               
               Cow position:chr2:20900413-20900790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 70

               
               
               Conread position:92-473
               
               
               Cow position:chr2:66217493-66217861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 86

               
               
               Conread position:92-473
               
               
               Cow position:chr2:74353949-74353583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:95-344
               
               
               Cow position:chr2:26851211-26850969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):167, 24

               
               
               Conread position:95-401
               
               
               Cow position:chr2:49467676-49467370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:217
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):164, 82

               
               
               Conread position:95-473
               
               
               Cow position:chr2:24271275-24270903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):172, 72

               
               
               Conread position:95-473
               
               
               Cow position:chr2:41147915-41147555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):155, 70

               
               
               Conread position:95-473
               
               
               Cow position:chr2:70896081-70895709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):287, 70

               
               
               Conread position:95-473
               
               
               Cow position:chr2:72528007-72527634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:95-484
               
               
               Cow position:chr2:70945451-70945067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):294, 114

               
               
               Conread position:96-416
               
               
               Cow position:chr2:67595974-67596279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):68, 44

               
               
               Conread position:96-473
               
               
               Cow position:chr2:15298585-15298220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:273
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):80, 99

               
               
               Conread position:100-410
               
               
               Cow position:chr2:51799280-51799579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:218
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):144, 0

               
               
               Conread position:102-378
               
               
               Cow position:chr2:55960571-55960834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):93, 70

               
               
               Conread position:102-417
               
               
               Cow position:chr2:45470047-45469739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:102-473
               
               
               Cow position:chr2:15674583-15674225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):319, 65

               
               
               Conread position:112-406
               
               
               Cow position:chr2:68190609-68190890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:207
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):26, 53

               
               
               Conread position:112-409
               
               
               Cow position:chr2:14555718-14556008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:207
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):52, 33

               
               
               Conread position:113-417
               
               
               Cow position:chr2:29802100-29802373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:211
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):270, 60

               
               
               Conread position:113-417
               
               
               Cow position:chr2:37113160-37113463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:219
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):91, 53

               
               
               Conread position:115-463
               
               
               Cow position:chr2:55278571-55278904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:115-472
               
               
               Cow position:chr2:85091006-85091356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 73

               
               
               Conread position:115-473
               
               
               Cow position:chr2:29269095-29268743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 152

               
               
               Conread position:115-473
               
               
               Cow position:chr2:81388720-81388370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 113

               
               
               Conread position:124-469
               
               
               Cow position:chr2:36007571-36007890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:243
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:130-299
               
               
               Cow position:chr2:85498782-85498951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):34, 44

               
               
               Conread position:145-473
               
               
               Cow position:chr2:818583-818256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:235
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):263, 17

               
               
               Conread position:160-428
               
               
               Cow position:chr2:12979030-12979298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:199
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):19, 14

               
               
               Conread position:177-406
               
               
               Cow position:chr2:16594577-16594353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:176
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:177-406
               
               
               Cow position:chr2:16632906-16632682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:176
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:177-473
               
               
               Cow position:chr2:13342014-13342301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:177-484
               
               
               Cow position:chr2:78744668-78744369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:178-365
               
               
               Cow position:chr2:39513991-39513813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):9, 82

               
               
               Conread position:181-460
               
               
               Cow position:chr2:48617945-48617670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:199
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:182-408
               
               
               Cow position:chr2:36630935-36630713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:172
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:183-472
               
               
               Cow position:chr2:841125-840839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:187-473
               
               
               Cow position:chr2:16693112-16692836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:190-473
               
               
               Cow position:chr2:60471138-60470861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:205
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):224, 92

               
               
               Conread position:195-469
               
               
               Cow position:chr2:8505767-8505500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:195-473
               
               
               Cow position:chr2:84997271-84996995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):152, 0

               
               
               Conread position:247-419
               
               
               Cow position:chr2:58310595-58310429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:247-453
               
               
               Cow position:chr2:17800420-17800220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:247-472
               
               
               Cow position:chr2:78750438-78750217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:174
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):142, 68

               
               
               Conread position:88-358
               
               
               Cow position:chr20:13652271-13652521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:192
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:88-406
               
               
               Cow position:chr20:14879885-14879574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:221
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):303, 170

               
               
               Conread position:88-473
               
               
               Cow position:chr20:4945156-4945524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):164, 10

               
               
               Conread position:88-473
               
               
               Cow position:chr20:12995909-12996288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 172

               
               
               Conread position:89-256
               
               
               Cow position:chr20:23506375-23506539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:119
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:89-292
               
               
               Cow position:chr20:24711936-24711732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):27, 169

               
               
               Conread position:89-302
               
               
               Cow position:chr20:24000702-24000911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:89-340
               
               
               Cow position:chr20:4334435-4334667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:89-370
               
               
               Cow position:chr20:3141669-3141407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:89-388
               
               
               Cow position:chr20:21929000-21928711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:212
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:89-415
               
               
               Cow position:chr20:11482039-11482360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:89-417
               
               
               Cow position:chr20:14759570-14759887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):166, 75

               
               
               Conread position:89-417
               
               
               Cow position:chr20:18551457-18551140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:232
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):60, 26

               
               
               Conread position:89-418
               
               
               Cow position:chr20:6890809-6890481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:233
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):226, 77

               
               
               Conread position:89-454
               
               
               Cow position:chr20:39417808-39418152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:258
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):121, 40

               
               
               Conread position:89-473
               
               
               Cow position:chr20:3599305-3599671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):322, 17

               
               
               Conread position:89-473
               
               
               Cow position:chr20:6054414-6054784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 228

               
               
               Conread position:89-473
               
               
               Cow position:chr20:8429842-8429469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 63

               
               
               Conread position:89-473
               
               
               Cow position:chr20:9433682-9433323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:89-473
               
               
               Cow position:chr20:10884262-10884645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):228, 101

               
               
               Conread position:89-473
               
               
               Cow position:chr20:20967416-20967078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:264
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:89-473
               
               
               Cow position:chr20:35146116-35145728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):150, 74

               
               
               Conread position:89-473
               
               
               Cow position:chr20:35797704-35797327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 17

               
               
               Conread position:89-473
               
               
               Cow position:chr20:36779634-36780009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:89-473
               
               
               Cow position:chr20:39415845-39415476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:261
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):60, 174

               
               
               Conread position:91-309
               
               
               Cow position:chr20:30992235-30992019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):72, 59

               
               
               Conread position:92-321
               
               
               Cow position:chr20:4332222-4332005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):165, 81

               
               
               Conread position:92-330
               
               
               Cow position:chr20:32523556-32523328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):63, 82

               
               
               Conread position:92-397
               
               
               Cow position:chr20:15565735-15566034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:214
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:92-416
               
               
               Cow position:chr20:1139675-1139995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 173

               
               
               Conread position:92-472
               
               
               Cow position:chr20:34001297-34001670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 173

               
               
               Conread position:92-473
               
               
               Cow position:chr20:9014255-9014627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:92-473
               
               
               Cow position:chr20:22959255-22959622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):321, 54

               
               
               Conread position:92-473
               
               
               Cow position:chr20:29845143-29844766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 86

               
               
               Conread position:94-378
               
               
               Cow position:chr20:14980419-14980698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):70, 85

               
               
               Conread position:95-343
               
               
               Cow position:chr20:36010885-36010639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:178
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):26, 39

               
               
               Conread position:95-412
               
               
               Cow position:chr20:34777269-34776968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:229
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):91, 70

               
               
               Conread position:95-417
               
               
               Cow position:chr20:14735758-14735454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:227
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:95-425
               
               
               Cow position:chr20:35176688-35177004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):224, 108

               
               
               Conread position:95-427
               
               
               Cow position:chr20:3331196-3331527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:229
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):61, 67

               
               
               Conread position:95-464
               
               
               Cow position:chr20:35958737-35958379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):169, 0

               
               
               Conread position:95-473
               
               
               Cow position:chr20:40782050-40781698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:261
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:95-474
               
               
               Cow position:chr20:580831-581208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 115

               
               
               Conread position:97-454
               
               
               Cow position:chr20:13967169-13967519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 88

               
               
               Conread position:99-347
               
               
               Cow position:chr20:282840-283083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):74, 85

               
               
               Conread position:99-378
               
               
               Cow position:chr20:11864048-11864320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:191
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:101-420
               
               
               Cow position:chr20:30778252-30777950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:212
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:102-416
               
               
               Cow position:chr20:22704377-22704066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 156

               
               
               Conread position:106-401
               
               
               Cow position:chr20:38551450-38551167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:212
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:112-417
               
               
               Cow position:chr20:7442060-7442347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:221
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):260, 55

               
               
               Conread position:112-473
               
               
               Cow position:chr20:9537211-9536858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 66

               
               
               Conread position:114-378
               
               
               Cow position:chr20:34365096-34364851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):52, 8

               
               
               Conread position:115-339
               
               
               Cow position:chr20:39247982-39247763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:162
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):145, 0

               
               
               Conread position:115-473
               
               
               Cow position:chr20:13876633-13876988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 62

               
               
               Conread position:115-473
               
               
               Cow position:chr20:33435095-33435441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):233, 145

               
               
               Conread position:140-340
               
               
               Cow position:chr20:41089748-41089941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):24, 44

               
               
               Conread position:152-453
               
               
               Cow position:chr20:15582005-15582294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:178-417
               
               
               Cow position:chr20:22007508-22007281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:170
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:186-473
               
               
               Cow position:chr20:6501805-6501520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:247-420
               
               
               Cow position:chr20:12784139-12783971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:45-304
               
               
               Cow position:chr21:8527324-8527571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:88-309
               
               
               Cow position:chr21:26245031-26244824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:88-416
               
               
               Cow position:chr21:27521221-27521526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:230
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):6, 54

               
               
               Conread position:88-446
               
               
               Cow position:chr21:41878588-41878245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:246
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:88-463
               
               
               Cow position:chr21:40786796-40786422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 73

               
               
               Conread position:88-473
               
               
               Cow position:chr21:19766971-19766596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 85

               
               
               Conread position:88-473
               
               
               Cow position:chr21:44671861-44671495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:89-258
               
               
               Cow position:chr21:28919407-28919575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:89-307
               
               
               Cow position:chr21:17009097-17008884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:89-328
               
               
               Cow position:chr21:46551987-46552214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:170
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):104, 111

               
               
               Conread position:89-331
               
               
               Cow position:chr21:25628794-25629029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:171
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:89-341
               
               
               Cow position:chr21:20153072-20152820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):75, 88

               
               
               Conread position:89-345
               
               
               Cow position:chr21:10538139-10538394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:176
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):161, 84

               
               
               Conread position:89-347
               
               
               Cow position:chr21:29978644-29978896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:186
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):74, 86

               
               
               Conread position:89-371
               
               
               Cow position:chr21:13840443-13840166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):75, 86

               
               
               Conread position:89-386
               
               
               Cow position:chr21:22193983-22194282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:215
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):32, 49

               
               
               Conread position:89-388
               
               
               Cow position:chr21:32339624-32339910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:89-388
               
               
               Cow position:chr21:32455020-32454728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):31, 44

               
               
               Conread position:89-398
               
               
               Cow position:chr21:46144075-46143760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:224
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):181, 77

               
               
               Conread position:89-402
               
               
               Cow position:chr21:37706299-37706594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):75, 107

               
               
               Conread position:89-404
               
               
               Cow position:chr21:14452350-14452041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:231
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):263, 77

               
               
               Conread position:89-406
               
               
               Cow position:chr21:3763626-3763928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):230, 74

               
               
               Conread position:89-409
               
               
               Cow position:chr21:42841481-42841785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):75, 156

               
               
               Conread position:89-417
               
               
               Cow position:chr21:41579872-41579549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:231
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):91, 116

               
               
               Conread position:89-464
               
               
               Cow position:chr21:23321962-23322330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):175, 74

               
               
               Conread position:89-468
               
               
               Cow position:chr21:9416367-9415989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 169

               
               
               Conread position:89-468
               
               
               Cow position:chr21:18289779-18289410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):293, 76

               
               
               Conread position:89-469
               
               
               Cow position:chr21:4281759-4282118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):374, 71

               
               
               Conread position:89-469
               
               
               Cow position:chr21:18568523-18568903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 74

               
               
               Conread position:89-471
               
               
               Cow position:chr21:6834165-6833796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:89-472
               
               
               Cow position:chr21:30231578-30231957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 89

               
               
               Conread position:89-472
               
               
               Cow position:chr21:30606971-30607360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 85

               
               
               Conread position:89-473
               
               
               Cow position:chr21:5153737-5153359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 93

               
               
               Conread position:89-473
               
               
               Cow position:chr21:10727393-10727023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:89-473
               
               
               Cow position:chr21:13034922-13035307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 150

               
               
               Conread position:89-473
               
               
               Cow position:chr21:13048077-13048454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 98

               
               
               Conread position:89-473
               
               
               Cow position:chr21:15584303-15584657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:89-473
               
               
               Cow position:chr21:20160792-20160426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:89-473
               
               
               Cow position:chr21:25127720-25127352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 98

               
               
               Conread position:91-308
               
               
               Cow position:chr21:8206886-8206674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):85, 73

               
               
               Conread position:92-329
               
               
               Cow position:chr21:18155453-18155689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:162
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:92-347
               
               
               Cow position:chr21:12461854-12462104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:186
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):73, 169

               
               
               Conread position:92-347
               
               
               Cow position:chr21:17875080-17875329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:176
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:92-369
               
               
               Cow position:chr21:24642633-24642364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:199
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:92-416
               
               
               Cow position:chr21:41621238-41620918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):229, 74

               
               
               Conread position:92-417
               
               
               Cow position:chr21:34739957-34739647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):136, 0

               
               
               Conread position:92-473
               
               
               Cow position:chr21:7564194-7564580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 198

               
               
               Conread position:92-474
               
               
               Cow position:chr21:20044651-20045026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 126

               
               
               Conread position:95-291
               
               
               Cow position:chr21:30256159-30256350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:135
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:95-344
               
               
               Cow position:chr21:34151695-34151450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):69, 15

               
               
               Conread position:95-385
               
               
               Cow position:chr21:19936810-19937103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):71, 166

               
               
               Conread position:95-406
               
               
               Cow position:chr21:10118669-10118362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:213
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):68, 50

               
               
               Conread position:95-414
               
               
               Cow position:chr21:23586992-23586677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 89

               
               
               Conread position:95-416
               
               
               Cow position:chr21:3818319-3818015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):135, 79

               
               
               Conread position:95-426
               
               
               Cow position:chr21:45473648-45473969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:234
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):157, 71

               
               
               Conread position:95-428
               
               
               Cow position:chr21:6624267-6623928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:235
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):236, 72

               
               
               Conread position:95-446
               
               
               Cow position:chr21:27124011-27124359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 157

               
               
               Conread position:95-473
               
               
               Cow position:chr21:27863403-27863777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 110

               
               
               Conread position:95-482
               
               
               Cow position:chr21:24222427-24222808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):316, 71

               
               
               Conread position:96-284
               
               
               Cow position:chr21:40432554-40432375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:96-328
               
               
               Cow position:chr21:6017734-6017498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:158
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):54, 95

               
               
               Conread position:96-332
               
               
               Cow position:chr21:23980073-23980305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):223, 70

               
               
               Conread position:97-383
               
               
               Cow position:chr21:10001182-10000912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:212
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:97-473
               
               
               Cow position:chr21:3585260-3585614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:100-383
               
               
               Cow position:chr21:45439131-45439419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):29, 42

               
               
               Conread position:100-404
               
               
               Cow position:chr21:47764012-47764301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:209
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):217, 64

               
               
               Conread position:112-387
               
               
               Cow position:chr21:28989703-28989443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:193
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:112-473
               
               
               Cow position:chr21:39888656-39889002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:115-281
               
               
               Cow position:chr21:1511383-1511220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:121
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):80, 61

               
               
               Conread position:115-392
               
               
               Cow position:chr21:18790472-18790733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:115-473
               
               
               Cow position:chr21:6764610-6764960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 63

               
               
               Conread position:115-473
               
               
               Cow position:chr21:33563098-33562756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):312, 51

               
               
               Conread position:119-473
               
               
               Cow position:chr21:13898274-13897935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:247
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):45, 146

               
               
               Conread position:125-473
               
               
               Cow position:chr21:28617671-28617344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:237
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):135, 0

               
               
               Conread position:156-435
               
               
               Cow position:chr21:28626291-28626021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:204
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:160-389
               
               
               Cow position:chr21:10608406-10608630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):210, 23

               
               
               Conread position:178-473
               
               
               Cow position:chr21:11706716-11707008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):169, 0

               
               
               Conread position:179-393
               
               
               Cow position:chr21:29979731-29979934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:188-402
               
               
               Cow position:chr21:9998698-9998908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):212, 72

               
               
               Conread position:190-473
               
               
               Cow position:chr21:12366399-12366129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:195-406
               
               
               Cow position:chr21:13850053-13850262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:151
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):152, 0

               
               
               Conread position:195-452
               
               
               Cow position:chr21:1483503-1483255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:195-473
               
               
               Cow position:chr21:4080371-4080096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):152, 0

               
               
               Conread position:200-402
               
               
               Cow position:chr21:4268883-4268686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:150
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:228-473
               
               
               Cow position:chr21:34254300-34254538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:180
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:230-473
               
               
               Cow position:chr21:30626202-30626441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:185
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:248-473
               
               
               Cow position:chr21:5595624-5595406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:176
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:249-473
               
               
               Cow position:chr21:46777014-46777231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:82-473
               
               
               Cow position:chr22:14376356-14376716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:276
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):82, 92

               
               
               Conread position:88-446
               
               
               Cow position:chr22:11130922-11130573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 170

               
               
               Conread position:88-452
               
               
               Cow position:chr22:5290900-5290540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):159, 98

               
               
               Conread position:88-473
               
               
               Cow position:chr22:47741470-47741091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:265
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):130, 18

               
               
               Conread position:89-306
               
               
               Cow position:chr22:3241654-3241859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:151
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:89-312
               
               
               Cow position:chr22:27740939-27740719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):163, 39

               
               
               Conread position:89-318
               
               
               Cow position:chr22:6096968-6097198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:157
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):76, 109

               
               
               Conread position:89-371
               
               
               Cow position:chr22:27825889-27825613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):61, 96

               
               
               Conread position:89-386
               
               
               Cow position:chr22:22223236-22222954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:202
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:89-386
               
               
               Cow position:chr22:25221849-25222140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 21

               
               
               Conread position:89-398
               
               
               Cow position:chr22:3965235-3964935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:216
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:89-403
               
               
               Cow position:chr22:8116039-8116337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):129, 86

               
               
               Conread position:89-406
               
               
               Cow position:chr22:28351610-28351914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:223
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):243, 17

               
               
               Conread position:89-412
               
               
               Cow position:chr22:534548-534229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):133, 77

               
               
               Conread position:89-412
               
               
               Cow position:chr22:28058001-28058305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):57, 93

               
               
               Conread position:89-417
               
               
               Cow position:chr22:4060898-4061208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:89-417
               
               
               Cow position:chr22:9372570-9372251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:244
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):80, 88

               
               
               Conread position:89-419
               
               
               Cow position:chr22:28146725-28146413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:226
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):77, 128

               
               
               Conread position:89-420
               
               
               Cow position:chr22:29013929-29013607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):129, 12

               
               
               Conread position:89-429
               
               
               Cow position:chr22:36560609-36560937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:229
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:89-434
               
               
               Cow position:chr22:21568046-21567717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:243
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:89-435
               
               
               Cow position:chr22:38930458-38930801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 32

               
               
               Conread position:89-463
               
               
               Cow position:chr22:30049517-30049887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 88

               
               
               Conread position:89-468
               
               
               Cow position:chr22:1484912-1484542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 77

               
               
               Conread position:89-469
               
               
               Cow position:chr22:1326468-1326100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 37

               
               
               Conread position:89-469
               
               
               Cow position:chr22:33448032-33448407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):319, 51

               
               
               Conread position:89-472
               
               
               Cow position:chr22:16044367-16044753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 176

               
               
               Conread position:89-473
               
               
               Cow position:chr22:1265875-1266264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 170

               
               
               Conread position:89-473
               
               
               Cow position:chr22:1279336-1279711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):237, 91

               
               
               Conread position:89-473
               
               
               Cow position:chr22:4990118-4990496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:254
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:89-473
               
               
               Cow position:chr22:6092605-6092967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:272
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):60, 89

               
               
               Conread position:89-473
               
               
               Cow position:chr22:6622198-6622570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:89-473
               
               
               Cow position:chr22:8733288-8733644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:262
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):24, 88

               
               
               Conread position:89-473
               
               
               Cow position:chr22:16273689-16273309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 259

               
               
               Conread position:89-473
               
               
               Cow position:chr22:16812115-16812488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 98

               
               
               Conread position:89-473
               
               
               Cow position:chr22:20626886-20626517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:89-473
               
               
               Cow position:chr22:23857095-23856723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):290, 78

               
               
               Conread position:89-473
               
               
               Cow position:chr22:26134175-26134557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 101

               
               
               Conread position:89-473
               
               
               Cow position:chr22:30483964-30483594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:263
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):227, 70

               
               
               Conread position:89-473
               
               
               Cow position:chr22:34398407-34398780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:89-489
               
               
               Cow position:chr22:44180642-44180251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 88

               
               
               Conread position:92-399
               
               
               Cow position:chr22:4993864-4994172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:217
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):35, 75

               
               
               Conread position:92-407
               
               
               Cow position:chr22:12968023-12968328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:92-409
               
               
               Cow position:chr22:37324590-37324286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:92-417
               
               
               Cow position:chr22:34750721-34750408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:229
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:92-446
               
               
               Cow position:chr22:16911748-16912088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:230
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):74, 119

               
               
               Conread position:92-469
               
               
               Cow position:chr22:34712772-34712400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 86

               
               
               Conread position:92-473
               
               
               Cow position:chr22:12681754-12682120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 95

               
               
               Conread position:92-473
               
               
               Cow position:chr22:14091177-14091553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 92

               
               
               Conread position:92-473
               
               
               Cow position:chr22:20323602-20323981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:244
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):85, 118

               
               
               Conread position:94-427
               
               
               Cow position:chr22:1975658-1975334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 83

               
               
               Conread position:95-342
               
               
               Cow position:chr22:1849117-1848869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):81, 215

               
               
               Conread position:95-402
               
               
               Cow position:chr22:28665326-28665015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:228
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):205, 69

               
               
               Conread position:95-469
               
               
               Cow position:chr22:25943518-25943160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:95-471
               
               
               Cow position:chr22:34475957-34476323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 71

               
               
               Conread position:95-473
               
               
               Cow position:chr22:4075844-4076223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 83

               
               
               Conread position:95-473
               
               
               Cow position:chr22:23176398-23176784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):163, 69

               
               
               Conread position:95-473
               
               
               Cow position:chr22:27328851-27329210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:269
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):164, 45

               
               
               Conread position:96-416
               
               
               Cow position:chr22:26339796-26339491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:231
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):286, 69

               
               
               Conread position:97-385
               
               
               Cow position:chr22:25629723-25630008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:206
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):229, 66

               
               
               Conread position:98-473
               
               
               Cow position:chr22:3960243-3960621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 67

               
               
               Conread position:99-314
               
               
               Cow position:chr22:22553201-22553405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:149
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:100-346
               
               
               Cow position:chr22:2524000-2523763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):64, 75

               
               
               Conread position:100-404
               
               
               Cow position:chr22:36562981-36563280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):272, 66

               
               
               Conread position:101-391
               
               
               Cow position:chr22:2010839-2010556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:204
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:101-416
               
               
               Cow position:chr22:19047778-19048071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:220
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):63, 77

               
               
               Conread position:102-473
               
               
               Cow position:chr22:15959731-15960100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 58

               
               
               Conread position:104-280
               
               
               Cow position:chr22:27681751-27681578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:124
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:112-412
               
               
               Cow position:chr22:37029578-37029866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:222
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):75, 52

               
               
               Conread position:112-473
               
               
               Cow position:chr22:6122878-6123210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:258
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:112-473
               
               
               Cow position:chr22:39494171-39494529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 67

               
               
               Conread position:114-473
               
               
               Cow position:chr22:22022913-22022565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 64

               
               
               Conread position:115-473
               
               
               Cow position:chr22:36539640-36540000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 37

               
               
               Conread position:130-439
               
               
               Cow position:chr22:10363076-10362775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):129, 35

               
               
               Conread position:134-473
               
               
               Cow position:chr22:28179862-28179519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:238
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):32, 169

               
               
               Conread position:155-347
               
               
               Cow position:chr22:1081489-1081303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):25, 40

               
               
               Conread position:186-378
               
               
               Cow position:chr22:22148032-22147840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):70, 55

               
               
               Conread position:186-473
               
               
               Cow position:chr22:15919675-15919960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:194-473
               
               
               Cow position:chr22:11200982-11200721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:193
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:196-473
               
               
               Cow position:chr22:37817700-37817440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:206-386
               
               
               Cow position:chr22:37066856-37067036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):33, 147

               
               
               Conread position:213-406
               
               
               Cow position:chr22:38313535-38313722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:243-473
               
               
               Cow position:chr22:2551281-2551070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:173
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:61-312
               
               
               Cow position:chr23:1636358-1636114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:184
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):27, 8

               
               
               Conread position:87-473
               
               
               Cow position:chr23:9594779-9595149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 19

               
               
               Conread position:88-321
               
               
               Cow position:chr23:12334267-12334037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):6, 79

               
               
               Conread position:88-415
               
               
               Cow position:chr23:8006299-8005979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 91

               
               
               Conread position:88-417
               
               
               Cow position:chr23:26794857-26795168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:235
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:88-473
               
               
               Cow position:chr23:37065905-37065521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 177

               
               
               Conread position:89-284
               
               
               Cow position:chr23:5436948-5437134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):58, 63

               
               
               Conread position:89-285
               
               
               Cow position:chr23:3244859-3245059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):77, 89

               
               
               Conread position:89-315
               
               
               Cow position:chr23:18415996-18416215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:89-342
               
               
               Cow position:chr23:33570189-33569945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):108, 71

               
               
               Conread position:89-342
               
               
               Cow position:chr23:34356697-34356443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:190
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):52, 86

               
               
               Conread position:89-346
               
               
               Cow position:chr23:38973902-38973652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:188
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):99, 17

               
               
               Conread position:89-347
               
               
               Cow position:chr23:40443915-40443670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):75, 115

               
               
               Conread position:89-370
               
               
               Cow position:chr23:20557790-20558076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):73, 94

               
               
               Conread position:89-385
               
               
               Cow position:chr23:29521527-29521237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):77, 87

               
               
               Conread position:89-388
               
               
               Cow position:chr23:24704339-24704040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:211
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):76, 167

               
               
               Conread position:89-401
               
               
               Cow position:chr23:18402235-18402534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:220
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:89-412
               
               
               Cow position:chr23:4968469-4968778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:230
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:89-418
               
               
               Cow position:chr23:16582855-16583174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:231
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):165, 87

               
               
               Conread position:89-445
               
               
               Cow position:chr23:31601396-31601750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:89-452
               
               
               Cow position:chr23:31970483-31970819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:242
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):93, 21

               
               
               Conread position:89-469
               
               
               Cow position:chr23:1397984-1398350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):177, 84

               
               
               Conread position:89-473
               
               
               Cow position:chr23:1254742-1254350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):146, 89

               
               
               Conread position:89-473
               
               
               Cow position:chr23:4528822-4529212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 177

               
               
               Conread position:89-473
               
               
               Cow position:chr23:18697971-18698346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 60

               
               
               Conread position:89-473
               
               
               Cow position:chr23:18802215-18802593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 85

               
               
               Conread position:89-473
               
               
               Cow position:chr23:21336429-21336809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 221

               
               
               Conread position:89-473
               
               
               Cow position:chr23:34314899-34315288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 225

               
               
               Conread position:91-469
               
               
               Cow position:chr23:25864647-25864995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:265
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):38, 47

               
               
               Conread position:91-482
               
               
               Cow position:chr23:1605281-1604898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 70

               
               
               Conread position:92-296
               
               
               Cow position:chr23:24984118-24984318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):174, 18

               
               
               Conread position:92-301
               
               
               Cow position:chr23:33153141-33153342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:144
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:92-308
               
               
               Cow position:chr23:33622098-33622312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):72, 130

               
               
               Conread position:92-346
               
               
               Cow position:chr23:19371023-19371265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:92-393
               
               
               Cow position:chr23:1885121-1885416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:92-398
               
               
               Cow position:chr23:16699990-16700284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):174, 68

               
               
               Conread position:92-469
               
               
               Cow position:chr23:28206649-28206299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:261
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:92-473
               
               
               Cow position:chr23:40502463-40502822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 70

               
               
               Conread position:95-306
               
               
               Cow position:chr23:1921178-1921385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:155
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:95-314
               
               
               Cow position:chr23:1767877-1767664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):138, 69

               
               
               Conread position:95-403
               
               
               Cow position:chr23:4562934-4562638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:211
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:95-423
               
               
               Cow position:chr23:187227-186901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):237, 71

               
               
               Conread position:95-469
               
               
               Cow position:chr23:11129282-11128917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 130

               
               
               Conread position:96-363
               
               
               Cow position:chr23:1742405-1742147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:183
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:97-304
               
               
               Cow position:chr23:3191078-3191284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:141
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):67, 81

               
               
               Conread position:106-473
               
               
               Cow position:chr23:6720243-6720597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:249
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):350, 154

               
               
               Conread position:107-315
               
               
               Cow position:chr23:9713359-9713153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):70, 59

               
               
               Conread position:107-341
               
               
               Cow position:chr23:40844687-40844460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:159
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:112-416
               
               
               Cow position:chr23:13555406-13555691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:211
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:115-347
               
               
               Cow position:chr23:29786317-29786548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):108, 35

               
               
               Conread position:115-406
               
               
               Cow position:chr23:38503077-38503379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):48, 60

               
               
               Conread position:115-469
               
               
               Cow position:chr23:14164369-14164720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 147

               
               
               Conread position:130-432
               
               
               Cow position:chr23:33232892-33233184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):11, 150

               
               
               Conread position:168-473
               
               
               Cow position:chr23:406195-406478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:177-459
               
               
               Cow position:chr23:3247553-3247285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:178-432
               
               
               Cow position:chr23:2316765-2316527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:181-401
               
               
               Cow position:chr23:36725948-36726162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):138, 68

               
               
               Conread position:183-473
               
               
               Cow position:chr23:7175581-7175303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:86-346
               
               
               Cow position:chr24:3664208-3663944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:185
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):64, 150

               
               
               Conread position:88-438
               
               
               Cow position:chr24:42344968-42345319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 73

               
               
               Conread position:88-473
               
               
               Cow position:chr24:27290900-27290534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:88-473
               
               
               Cow position:chr24:32054690-32054325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):300, 88

               
               
               Conread position:89-302
               
               
               Cow position:chr24:10300104-10299903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):77, 34

               
               
               Conread position:89-303
               
               
               Cow position:chr24:19000075-18999866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):158, 77

               
               
               Conread position:89-304
               
               
               Cow position:chr24:16895409-16895618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):74, 86

               
               
               Conread position:89-306
               
               
               Cow position:chr24:19800875-19800662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):75, 88

               
               
               Conread position:89-332
               
               
               Cow position:chr24:28253735-28253500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):76, 107

               
               
               Conread position:89-341
               
               
               Cow position:chr24:15373433-15373194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):186, 85

               
               
               Conread position:89-363
               
               
               Cow position:chr24:18344091-18343812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):77, 223

               
               
               Conread position:89-409
               
               
               Cow position:chr24:7914034-7913716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):171, 0

               
               
               Conread position:89-412
               
               
               Cow position:chr24:30229501-30229181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):299, 145

               
               
               Conread position:89-417
               
               
               Cow position:chr24:27096717-27096396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:226
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):77, 23

               
               
               Conread position:89-444
               
               
               Cow position:chr24:19535228-19535562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:246
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):353, 77

               
               
               Conread position:89-469
               
               
               Cow position:chr24:11840215-11839838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):142, 74

               
               
               Conread position:89-469
               
               
               Cow position:chr24:27874623-27874260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):294, 77

               
               
               Conread position:89-472
               
               
               Cow position:chr24:41986023-41985621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 21

               
               
               Conread position:89-473
               
               
               Cow position:chr24:3493912-3493548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:89-473
               
               
               Cow position:chr24:18484966-18485346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 154

               
               
               Conread position:89-473
               
               
               Cow position:chr24:18741544-18741915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:89-473
               
               
               Cow position:chr24:20024641-20024261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):172, 75

               
               
               Conread position:89-473
               
               
               Cow position:chr24:20225764-20225391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):165, 17

               
               
               Conread position:89-473
               
               
               Cow position:chr24:23616724-23616349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):147, 72

               
               
               Conread position:89-473
               
               
               Cow position:chr24:27906466-27906082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 72

               
               
               Conread position:89-473
               
               
               Cow position:chr24:29673550-29673173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 95

               
               
               Conread position:89-473
               
               
               Cow position:chr24:32693747-32693359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 171

               
               
               Conread position:89-473
               
               
               Cow position:chr24:33944429-33944047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:273
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):325, 64

               
               
               Conread position:92-344
               
               
               Cow position:chr24:33465593-33465819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:176
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:92-347
               
               
               Cow position:chr24:10841182-10841437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):105, 81

               
               
               Conread position:92-358
               
               
               Cow position:chr24:20249871-20250135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:188
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):64, 69

               
               
               Conread position:92-465
               
               
               Cow position:chr24:29679288-29679650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):165, 14

               
               
               Conread position:92-472
               
               
               Cow position:chr24:44040980-44041351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 172

               
               
               Conread position:93-339
               
               
               Cow position:chr24:10125898-10125648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):36, 49

               
               
               Conread position:94-469
               
               
               Cow position:chr24:29170986-29170634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:258
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):169, 69

               
               
               Conread position:95-308
               
               
               Cow position:chr24:16645298-16645512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:148
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):82, 198

               
               
               Conread position:95-338
               
               
               Cow position:chr24:34008551-34008793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):69, 163

               
               
               Conread position:96-326
               
               
               Cow position:chr24:352585-352809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:96-473
               
               
               Cow position:chr24:19465896-19466279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 83

               
               
               Conread position:97-469
               
               
               Cow position:chr24:30483928-30484276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 80

               
               
               Conread position:98-388
               
               
               Cow position:chr24:2970586-2970868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):67, 58

               
               
               Conread position:100-473
               
               
               Cow position:chr24:814244-814608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 124

               
               
               Conread position:107-469
               
               
               Cow position:chr24:15473368-15473016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):147, 60

               
               
               Conread position:115-458
               
               
               Cow position:chr24:18266160-18266503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 70

               
               
               Conread position:115-473
               
               
               Cow position:chr24:6160087-6160430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:243
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:118-454
               
               
               Cow position:chr24:34315355-34315032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 45

               
               
               Conread position:119-469
               
               
               Cow position:chr24:16625488-16625843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 59

               
               
               Conread position:134-473
               
               
               Cow position:chr24:29360013-29360324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:241
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:177-473
               
               
               Cow position:chr24:7301402-7301112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:212
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):125, 9

               
               
               Conread position:178-473
               
               
               Cow position:chr24:6340953-6340671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:214
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:178-473
               
               
               Cow position:chr24:39440613-39440903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):204, 136

               
               
               Conread position:190-406
               
               
               Cow position:chr24:6900756-6900545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:158
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:196-473
               
               
               Cow position:chr24:37246288-37246564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 0

               
               
               Conread position:197-393
               
               
               Cow position:chr24:25950744-25950933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):93, 52

               
               
               Conread position:247-473
               
               
               Cow position:chr24:32015001-32014778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):137, 50

               
               
               Conread position:88-469
               
               
               Cow position:chr25:6463978-6464348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 91

               
               
               Conread position:88-473
               
               
               Cow position:chr25:18294263-18294639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):301, 77

               
               
               Conread position:89-308
               
               
               Cow position:chr25:21893388-21893174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):168, 0

               
               
               Conread position:89-340
               
               
               Cow position:chr25:17342508-17342257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:183
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:89-387
               
               
               Cow position:chr25:38425411-38425127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:206
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:89-393
               
               
               Cow position:chr25:18988440-18988132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 184

               
               
               Conread position:89-399
               
               
               Cow position:chr25:12293697-12294001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:221
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):77, 92

               
               
               Conread position:89-406
               
               
               Cow position:chr25:7581381-7581684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:89-410
               
               
               Cow position:chr25:17566637-17566326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:224
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):77, 88

               
               
               Conread position:89-416
               
               
               Cow position:chr25:28187895-28188215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:89-445
               
               
               Cow position:chr25:6474037-6474396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 170

               
               
               Conread position:89-464
               
               
               Cow position:chr25:16921747-16922107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 88

               
               
               Conread position:89-471
               
               
               Cow position:chr25:33663855-33664218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 85

               
               
               Conread position:89-473
               
               
               Cow position:chr25:17658661-17658291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 85

               
               
               Conread position:89-473
               
               
               Cow position:chr25:18564536-18564171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:89-474
               
               
               Cow position:chr25:26087569-26087191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 14

               
               
               Conread position:92-264
               
               
               Cow position:chr25:30816936-30816763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:92-340
               
               
               Cow position:chr25:26134089-26133846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):74, 89

               
               
               Conread position:92-347
               
               
               Cow position:chr25:13272616-13272370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):147, 0

               
               
               Conread position:92-386
               
               
               Cow position:chr25:21289393-21289103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:92-412
               
               
               Cow position:chr25:18487715-18487411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:220
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):163, 67

               
               
               Conread position:92-417
               
               
               Cow position:chr25:37594453-37594146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:232
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):71, 86

               
               
               Conread position:92-439
               
               
               Cow position:chr25:21894837-21895177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):325, 150

               
               
               Conread position:92-464
               
               
               Cow position:chr25:16064939-16064584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 85

               
               
               Conread position:92-469
               
               
               Cow position:chr25:3145891-3145526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:92-469
               
               
               Cow position:chr25:9956991-9957354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):329, 65

               
               
               Conread position:92-473
               
               
               Cow position:chr25:20402662-20403043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 254

               
               
               Conread position:93-322
               
               
               Cow position:chr25:9002718-9002497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:95-337
               
               
               Cow position:chr25:18905929-18905692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:179
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:95-341
               
               
               Cow position:chr25:13672439-13672195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):69, 82

               
               
               Conread position:95-404
               
               
               Cow position:chr25:11666692-11666401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:207
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:95-417
               
               
               Cow position:chr25:22203645-22203958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):214, 26

               
               
               Conread position:95-469
               
               
               Cow position:chr25:12097884-12097522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:255
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):371, 113

               
               
               Conread position:95-473
               
               
               Cow position:chr25:10643265-10643632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 70

               
               
               Conread position:97-347
               
               
               Cow position:chr25:40904788-40905028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:175
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):150, 67

               
               
               Conread position:97-385
               
               
               Cow position:chr25:61692-61421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:203
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):162, 76

               
               
               Conread position:97-499
               
               
               Cow position:chr25:6885929-6886320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:269
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):68, 80

               
               
               Conread position:115-347
               
               
               Cow position:chr25:26269913-26270133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):49, 62

               
               
               Conread position:115-471
               
               
               Cow position:chr25:10504313-10504659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:238
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):273, 52

               
               
               Conread position:142-406
               
               
               Cow position:chr25:16001528-16001778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):241, 34

               
               
               Conread position:163-368
               
               
               Cow position:chr25:12899733-12899536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:178-387
               
               
               Cow position:chr25:15286579-15286778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:147
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:178-412
               
               
               Cow position:chr25:11139611-11139387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:238-473
               
               
               Cow position:chr25:10657117-10657361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):141, 78

               
               
               Conread position:239-473
               
               
               Cow position:chr25:6803458-6803240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:173
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:72-484
               
               
               Cow position:chr26:33045165-33044768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):224, 17

               
               
               Conread position:88-413
               
               
               Cow position:chr26:34314761-34314432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:229
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):201, 98

               
               
               Conread position:89-298
               
               
               Cow position:chr26:33074428-33074634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:147
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):74, 61

               
               
               Conread position:89-299
               
               
               Cow position:chr26:14905739-14905946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):89, 172

               
               
               Conread position:89-304
               
               
               Cow position:chr26:33253247-33253461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:150
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):85, 75

               
               
               Conread position:89-337
               
               
               Cow position:chr26:22249408-22249652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):157, 87

               
               
               Conread position:89-344
               
               
               Cow position:chr26:22354482-22354236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:180
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:89-345
               
               
               Cow position:chr26:34060402-34060155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:89-346
               
               
               Cow position:chr26:35449132-35448884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:182
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):89, 164

               
               
               Conread position:89-360
               
               
               Cow position:chr26:4167284-4167548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):102, 74

               
               
               Conread position:89-380
               
               
               Cow position:chr26:10764281-10764007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:205
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):12, 25

               
               
               Conread position:89-387
               
               
               Cow position:chr26:23000971-23001264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:89-388
               
               
               Cow position:chr26:6005985-6006266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):208, 114

               
               
               Conread position:89-396
               
               
               Cow position:chr26:19774230-19774531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 77

               
               
               Conread position:89-402
               
               
               Cow position:chr26:6794214-6793906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):169, 84

               
               
               Conread position:89-412
               
               
               Cow position:chr26:33160433-33160741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:215
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):57, 63

               
               
               Conread position:89-441
               
               
               Cow position:chr26:4363369-4363032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:244
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):77, 111

               
               
               Conread position:89-453
               
               
               Cow position:chr26:16550053-16549698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):214, 84

               
               
               Conread position:89-469
               
               
               Cow position:chr26:3706861-3706502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:89-473
               
               
               Cow position:chr26:6714233-6714588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 49

               
               
               Conread position:89-473
               
               
               Cow position:chr26:32683185-32682809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 0

               
               
               Conread position:89-506
               
               
               Cow position:chr26:19459762-19459336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 148

               
               
               Conread position:90-405
               
               
               Cow position:chr26:33096490-33096803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 69

               
               
               Conread position:92-384
               
               
               Cow position:chr26:33857128-33857414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):284, 82

               
               
               Conread position:92-397
               
               
               Cow position:chr26:26200903-26200616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:206
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):64, 86

               
               
               Conread position:92-416
               
               
               Cow position:chr26:4854611-4854289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):74, 220

               
               
               Conread position:92-469
               
               
               Cow position:chr26:5102758-5103123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 32

               
               
               Conread position:92-469
               
               
               Cow position:chr26:32601416-32601050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):137, 58

               
               
               Conread position:92-473
               
               
               Cow position:chr26:8353035-8352654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 156

               
               
               Conread position:93-304
               
               
               Cow position:chr26:31633793-31633585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:94-469
               
               
               Cow position:chr26:31701876-31701514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:95-321
               
               
               Cow position:chr26:14578390-14578168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:95-344
               
               
               Cow position:chr26:30568600-30568833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:99-473
               
               
               Cow position:chr26:4585151-4585515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):153, 75

               
               
               Conread position:100-388
               
               
               Cow position:chr26:30254575-30254854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):142, 73

               
               
               Conread position:100-465
               
               
               Cow position:chr26:16166857-16167207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 0

               
               
               Conread position:101-473
               
               
               Cow position:chr26:8699990-8700355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:115-444
               
               
               Cow position:chr26:11134644-11134972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 27

               
               
               Conread position:130-406
               
               
               Cow position:chr26:9850069-9850331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):35, 47

               
               
               Conread position:130-406
               
               
               Cow position:chr26:9853579-9853841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):35, 47

               
               
               Conread position:131-406
               
               
               Cow position:chr26:32688463-32688191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:197
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):35, 49

               
               
               Conread position:183-311
               
               
               Cow position:chr26:20855370-20855243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:98
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:190-406
               
               
               Cow position:chr26:30808012-30807796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):129, 158

               
               
               Conread position:224-468
               
               
               Cow position:chr26:29576326-29576090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:183
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:247-472
               
               
               Cow position:chr26:14395319-14395539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:172
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:249-473
               
               
               Cow position:chr26:22180418-22180200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:83-473
               
               
               Cow position:chr27:10992253-10992645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 11

               
               
               Conread position:86-410
               
               
               Cow position:chr27:27641111-27640777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 273

               
               
               Conread position:87-507
               
               
               Cow position:chr27:26920009-26919602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 148

               
               
               Conread position:88-309
               
               
               Cow position:chr27:27442266-27442051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):89, 78

               
               
               Conread position:89-343
               
               
               Cow position:chr27:7649678-7649433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):27, 85

               
               
               Conread position:89-347
               
               
               Cow position:chr27:7731353-7731095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:174
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):61, 218

               
               
               Conread position:89-347
               
               
               Cow position:chr27:11480732-11480476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):76, 174

               
               
               Conread position:89-347
               
               
               Cow position:chr27:22513773-22513521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):134, 85

               
               
               Conread position:89-366
               
               
               Cow position:chr27:13841273-13841548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):67, 75

               
               
               Conread position:89-387
               
               
               Cow position:chr27:18739281-18739580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:214
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):65, 232

               
               
               Conread position:89-404
               
               
               Cow position:chr27:22454871-22454570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):197, 85

               
               
               Conread position:89-414
               
               
               Cow position:chr27:30354440-30354126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:224
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:89-417
               
               
               Cow position:chr27:19660836-19661165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 246

               
               
               Conread position:89-427
               
               
               Cow position:chr27:7935253-7934931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:220
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):9, 89

               
               
               Conread position:89-432
               
               
               Cow position:chr27:6499965-6500302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:89-435
               
               
               Cow position:chr27:10979767-10980104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 77

               
               
               Conread position:89-461
               
               
               Cow position:chr27:6550368-6550717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:89-467
               
               
               Cow position:chr27:11435418-11435060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):322, 77

               
               
               Conread position:89-469
               
               
               Cow position:chr27:23128364-23128728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 39

               
               
               Conread position:89-472
               
               
               Cow position:chr27:26413350-26412981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:89-473
               
               
               Cow position:chr27:15871065-15871440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:263
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):67, 103

               
               
               Conread position:89-473
               
               
               Cow position:chr27:29831793-29831410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 73

               
               
               Conread position:90-440
               
               
               Cow position:chr27:11081106-11081441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:238
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:92-304
               
               
               Cow position:chr27:30672651-30672449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:92-322
               
               
               Cow position:chr27:715408-715635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):72, 50

               
               
               Conread position:92-363
               
               
               Cow position:chr27:29184930-29184674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:183
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:92-472
               
               
               Cow position:chr27:1353490-1353872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:275
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):72, 170

               
               
               Conread position:92-473
               
               
               Cow position:chr27:16786736-16787110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):315, 81

               
               
               Conread position:92-473
               
               
               Cow position:chr27:21408656-21408270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 74

               
               
               Conread position:92-473
               
               
               Cow position:chr27:24999833-24999458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:95-329
               
               
               Cow position:chr27:20918801-20919028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:160
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):80, 30

               
               
               Conread position:95-473
               
               
               Cow position:chr27:26428222-26427850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:95-473
               
               
               Cow position:chr27:27064529-27064166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:96-472
               
               
               Cow position:chr27:4386150-4385788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):287, 69

               
               
               Conread position:98-473
               
               
               Cow position:chr27:21978221-21977859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:99-385
               
               
               Cow position:chr27:20037202-20036938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):65, 78

               
               
               Conread position:99-468
               
               
               Cow position:chr27:30582648-30583010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 163

               
               
               Conread position:100-473
               
               
               Cow position:chr27:15925261-15925613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:249
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):356, 71

               
               
               Conread position:112-410
               
               
               Cow position:chr27:18558284-18558579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:211
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):53, 66

               
               
               Conread position:115-337
               
               
               Cow position:chr27:7538147-7537929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:164
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):142, 25

               
               
               Conread position:115-393
               
               
               Cow position:chr27:21569910-21569645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:115-417
               
               
               Cow position:chr27:6522974-6523268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 51

               
               
               Conread position:115-473
               
               
               Cow position:chr27:23882442-23882087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):296, 13

               
               
               Conread position:117-410
               
               
               Cow position:chr27:26135069-26135375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:217
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):60, 49

               
               
               Conread position:119-314
               
               
               Cow position:chr27:20570053-20570246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):12, 56

               
               
               Conread position:121-472
               
               
               Cow position:chr27:18543928-18544275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 63

               
               
               Conread position:135-446
               
               
               Cow position:chr27:23929925-23930215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:224
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:183-416
               
               
               Cow position:chr27:13638998-13638771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:173
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:195-458
               
               
               Cow position:chr27:2930591-2930332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):252, 104

               
               
               Conread position:88-473
               
               
               Cow position:chr28:10681765-10682138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 6

               
               
               Conread position:89-347
               
               
               Cow position:chr28:4881183-4881437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:186
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):165, 84

               
               
               Conread position:89-350
               
               
               Cow position:chr28:10999612-10999863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):76, 147

               
               
               Conread position:89-357
               
               
               Cow position:chr28:26982681-26982949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):168, 75

               
               
               Conread position:89-361
               
               
               Cow position:chr28:19055071-19054812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:184
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):77, 101

               
               
               Conread position:89-367
               
               
               Cow position:chr28:3714858-3714591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:192
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):75, 88

               
               
               Conread position:89-388
               
               
               Cow position:chr28:5144464-5144754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:217
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):177, 75

               
               
               Conread position:89-393
               
               
               Cow position:chr28:34430366-34430663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:89-405
               
               
               Cow position:chr28:4914034-4914350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 100

               
               
               Conread position:89-406
               
               
               Cow position:chr28:19079788-19080097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:89-407
               
               
               Cow position:chr28:2899046-2898745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:89-414
               
               
               Cow position:chr28:22485310-22484991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:223
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):77, 103

               
               
               Conread position:89-415
               
               
               Cow position:chr28:8408791-8408479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:230
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):294, 75

               
               
               Conread position:89-415
               
               
               Cow position:chr28:21502449-21502137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:229
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:89-423
               
               
               Cow position:chr28:34230285-34229963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:89-431
               
               
               Cow position:chr28:26743683-26743348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 94

               
               
               Conread position:89-441
               
               
               Cow position:chr28:2819832-2819474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:247
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):77, 217

               
               
               Conread position:89-445
               
               
               Cow position:chr28:27218380-27218033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):344, 84

               
               
               Conread position:89-446
               
               
               Cow position:chr28:31109947-31110294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 86

               
               
               Conread position:89-469
               
               
               Cow position:chr28:8347788-8347410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:270
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):296, 75

               
               
               Conread position:89-473
               
               
               Cow position:chr28:662163-661797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:267
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):97, 78

               
               
               Conread position:89-473
               
               
               Cow position:chr28:5827007-5826632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):142, 77

               
               
               Conread position:89-473
               
               
               Cow position:chr28:12758443-12758823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:89-473
               
               
               Cow position:chr28:19222094-19222461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:89-473
               
               
               Cow position:chr28:28765846-28766227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):382, 87

               
               
               Conread position:89-473
               
               
               Cow position:chr28:34442701-34443079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:256
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):197, 63

               
               
               Conread position:89-474
               
               
               Cow position:chr28:6059413-6059785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):182, 76

               
               
               Conread position:89-474
               
               
               Cow position:chr28:16109996-16109636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 106

               
               
               Conread position:89-495
               
               
               Cow position:chr28:14657754-14657358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 77

               
               
               Conread position:89-500
               
               
               Cow position:chr28:4307840-4308242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 92

               
               
               Conread position:92-341
               
               
               Cow position:chr28:11866611-11866855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):191, 84

               
               
               Conread position:92-384
               
               
               Cow position:chr28:10053271-10053566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):30, 184

               
               
               Conread position:92-406
               
               
               Cow position:chr28:25249408-25249106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:222
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):103, 73

               
               
               Conread position:95-378
               
               
               Cow position:chr28:18625285-18625001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):109, 251

               
               
               Conread position:95-409
               
               
               Cow position:chr28:3078630-3078930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:95-420
               
               
               Cow position:chr28:3408167-3408480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:223
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):68, 97

               
               
               Conread position:95-473
               
               
               Cow position:chr28:10615895-10616266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:280
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):51, 119

               
               
               Conread position:95-473
               
               
               Cow position:chr28:25763073-25762716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):138, 71

               
               
               Conread position:95-478
               
               
               Cow position:chr28:23530925-23530543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 167

               
               
               Conread position:98-264
               
               
               Cow position:chr28:3011221-3011388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:100-416
               
               
               Cow position:chr28:19025959-19026262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:230
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):66, 164

               
               
               Conread position:100-469
               
               
               Cow position:chr28:9285324-9285676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 161

               
               
               Conread position:106-416
               
               
               Cow position:chr28:16252816-16253114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 152

               
               
               Conread position:112-339
               
               
               Cow position:chr28:15944188-15943965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):207, 52

               
               
               Conread position:112-469
               
               
               Cow position:chr28:7267909-7268245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:248
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:115-417
               
               
               Cow position:chr28:13176650-13176939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:127-447
               
               
               Cow position:chr28:22170690-22171009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 137

               
               
               Conread position:129-453
               
               
               Cow position:chr28:16407108-16406791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:211
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):49, 11

               
               
               Conread position:130-409
               
               
               Cow position:chr28:16386490-16386758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:178-410
               
               
               Cow position:chr28:24367962-24368204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):70, 8

               
               
               Conread position:183-473
               
               
               Cow position:chr28:14151199-14150922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):153, 41

               
               
               Conread position:186-391
               
               
               Cow position:chr28:26340305-26340102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:152
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:88-385
               
               
               Cow position:chr29:6286110-6286393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:89-285
               
               
               Cow position:chr29:36220584-36220387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):75, 139

               
               
               Conread position:89-309
               
               
               Cow position:chr29:17297186-17296967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:147
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:89-361
               
               
               Cow position:chr29:26653994-26654252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):38, 79

               
               
               Conread position:89-366
               
               
               Cow position:chr29:31489369-31489103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:195
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:89-380
               
               
               Cow position:chr29:868825-868542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:203
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:89-400
               
               
               Cow position:chr29:18735589-18735893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 70

               
               
               Conread position:89-407
               
               
               Cow position:chr29:17222463-17222151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:220
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:89-415
               
               
               Cow position:chr29:41530900-41530585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:226
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):201, 170

               
               
               Conread position:89-416
               
               
               Cow position:chr29:40298970-40299279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):311, 74

               
               
               Conread position:89-417
               
               
               Cow position:chr29:22068690-22069014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:231
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):75, 201

               
               
               Conread position:89-422
               
               
               Cow position:chr29:7966296-7965981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:241
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):61, 96

               
               
               Conread position:89-428
               
               
               Cow position:chr29:14501643-14501316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 86

               
               
               Conread position:89-473
               
               
               Cow position:chr29:465349-465722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 76

               
               
               Conread position:89-473
               
               
               Cow position:chr29:1022346-1021946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 70

               
               
               Conread position:89-473
               
               
               Cow position:chr29:2744217-2744595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 173

               
               
               Conread position:89-473
               
               
               Cow position:chr29:21196599-21196973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 79

               
               
               Conread position:89-473
               
               
               Cow position:chr29:21443288-21443667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 88

               
               
               Conread position:89-473
               
               
               Cow position:chr29:23874510-23874134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 77

               
               
               Conread position:89-473
               
               
               Cow position:chr29:34745608-34745977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 48

               
               
               Conread position:91-473
               
               
               Cow position:chr29:9638272-9638635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:92-312
               
               
               Cow position:chr29:10018626-10018407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:150
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):64, 69

               
               
               Conread position:92-347
               
               
               Cow position:chr29:26270115-26269869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:170
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):74, 87

               
               
               Conread position:92-367
               
               
               Cow position:chr29:35677496-35677762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:186
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):64, 97

               
               
               Conread position:92-392
               
               
               Cow position:chr29:25474970-25474665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 92

               
               
               Conread position:92-406
               
               
               Cow position:chr29:34297521-34297821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):115, 107

               
               
               Conread position:92-472
               
               
               Cow position:chr29:31926242-31926612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:92-473
               
               
               Cow position:chr29:3704151-3704522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 118

               
               
               Conread position:92-473
               
               
               Cow position:chr29:4120901-4120529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 220

               
               
               Conread position:92-473
               
               
               Cow position:chr29:26017455-26017834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 84

               
               
               Conread position:95-347
               
               
               Cow position:chr29:11434163-11433924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:95-473
               
               
               Cow position:chr29:86967-87336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 84

               
               
               Conread position:95-473
               
               
               Cow position:chr29:19428703-19428350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:260
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:96-314
               
               
               Cow position:chr29:29942684-29942902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:149
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):59, 82

               
               
               Conread position:96-333
               
               
               Cow position:chr29:20910649-20910885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):34, 45

               
               
               Conread position:97-447
               
               
               Cow position:chr29:17065-17401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 112

               
               
               Conread position:97-473
               
               
               Cow position:chr29:19792234-19792590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:261
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):59, 64

               
               
               Conread position:98-365
               
               
               Cow position:chr29:14484496-14484761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:186
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):77, 170

               
               
               Conread position:100-469
               
               
               Cow position:chr29:32521913-32521544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:258
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):63, 122

               
               
               Conread position:101-347
               
               
               Cow position:chr29:44384155-44384399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):86, 94

               
               
               Conread position:112-473
               
               
               Cow position:chr29:12004735-12005087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):135, 52

               
               
               Conread position:112-473
               
               
               Cow position:chr29:28868666-28868308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 92

               
               
               Conread position:123-452
               
               
               Cow position:chr29:26735045-26734731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:163-469
               
               
               Cow position:chr29:2414835-2415126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):106, 100

               
               
               Conread position:164-462
               
               
               Cow position:chr29:44310047-44310340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:211
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):16, 152

               
               
               Conread position:178-383
               
               
               Cow position:chr29:19253856-19254056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):129, 0

               
               
               Conread position:178-410
               
               
               Cow position:chr29:19389451-19389226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):129, 0

               
               
               Conread position:178-473
               
               
               Cow position:chr29:36037665-36037389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:209
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:180-473
               
               
               Cow position:chr29:961886-961597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:186-347
               
               
               Cow position:chr29:3100301-3100460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:125
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:186-464
               
               
               Cow position:chr29:8163902-8164176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 75

               
               
               Conread position:190-345
               
               
               Cow position:chr29:26508445-26508290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:115
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):47, 136

               
               
               Conread position:195-414
               
               
               Cow position:chr29:5919375-5919589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:217-417
               
               
               Cow position:chr29:21933187-21933380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:253-393
               
               
               Cow position:chr29:23577884-23578019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:109
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:73-417
               
               
               Cow position:chr3:63179903-63179579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:243
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):21, 103

               
               
               Conread position:83-411
               
               
               Cow position:chr3:20674840-20675162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):218, 81

               
               
               Conread position:88-269
               
               
               Cow position:chr3:43727108-43726926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):170, 143

               
               
               Conread position:88-473
               
               
               Cow position:chr3:61539832-61539452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 6

               
               
               Conread position:89-282
               
               
               Cow position:chr3:15153719-15153533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):82, 107

               
               
               Conread position:89-282
               
               
               Cow position:chr3:19793562-19793752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):76, 86

               
               
               Conread position:89-285
               
               
               Cow position:chr3:59884041-59884235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):89, 77

               
               
               Conread position:89-290
               
               
               Cow position:chr3:30222219-30222018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):28, 176

               
               
               Conread position:89-299
               
               
               Cow position:chr3:19792933-19792716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):58, 98

               
               
               Conread position:89-308
               
               
               Cow position:chr3:53318429-53318218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:153
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:89-313
               
               
               Cow position:chr3:76267947-76268170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):74, 194

               
               
               Conread position:89-314
               
               
               Cow position:chr3:63269251-63269034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:89-329
               
               
               Cow position:chr3:27696950-27697185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:171
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:89-332
               
               
               Cow position:chr3:57760526-57760293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:163
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:89-338
               
               
               Cow position:chr3:59621620-59621849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:89-343
               
               
               Cow position:chr3:35005804-35005561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:89-360
               
               
               Cow position:chr3:21547072-21547334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:89-368
               
               
               Cow position:chr3:39661429-39661690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:89-371
               
               
               Cow position:chr3:23444860-23445133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):76, 125

               
               
               Conread position:89-398
               
               
               Cow position:chr3:13301822-13302126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:226
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):246, 85

               
               
               Conread position:89-400
               
               
               Cow position:chr3:45279494-45279185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:213
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):75, 101

               
               
               Conread position:89-400
               
               
               Cow position:chr3:60933445-60933143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:215
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):65, 72

               
               
               Conread position:89-404
               
               
               Cow position:chr3:57624492-57624187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):282, 75

               
               
               Conread position:89-406
               
               
               Cow position:chr3:57764246-57763945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:89-408
               
               
               Cow position:chr3:70334667-70334983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:228
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):170, 77

               
               
               Conread position:89-410
               
               
               Cow position:chr3:66900705-66901024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 115

               
               
               Conread position:89-412
               
               
               Cow position:chr3:52863156-52863467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:89-417
               
               
               Cow position:chr3:5097235-5096914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):296, 84

               
               
               Conread position:89-417
               
               
               Cow position:chr3:15228795-15229108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):130, 84

               
               
               Conread position:89-417
               
               
               Cow position:chr3:17957495-17957178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:89-417
               
               
               Cow position:chr3:23471431-23471757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 165

               
               
               Conread position:89-417
               
               
               Cow position:chr3:74878561-74878893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:237
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):266, 69

               
               
               Conread position:89-419
               
               
               Cow position:chr3:55124252-55124569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 140

               
               
               Conread position:89-429
               
               
               Cow position:chr3:72473943-72473606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:229
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):171, 0

               
               
               Conread position:89-432
               
               
               Cow position:chr3:2518511-2518841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:230
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:89-435
               
               
               Cow position:chr3:82461207-82460876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):297, 78

               
               
               Conread position:89-439
               
               
               Cow position:chr3:53270858-53270514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):342, 71

               
               
               Conread position:89-439
               
               
               Cow position:chr3:66292148-66292484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:244
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):206, 105

               
               
               Conread position:89-442
               
               
               Cow position:chr3:46901227-46900881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 80

               
               
               Conread position:89-446
               
               
               Cow position:chr3:28898195-28898546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):330, 85

               
               
               Conread position:89-446
               
               
               Cow position:chr3:55970535-55970189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:89-446
               
               
               Cow position:chr3:57754448-57754798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:89-446
               
               
               Cow position:chr3:67704574-67704218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 177

               
               
               Conread position:89-458
               
               
               Cow position:chr3:17934910-17935257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:256
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):75, 86

               
               
               Conread position:89-461
               
               
               Cow position:chr3:61171480-61171835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):168, 84

               
               
               Conread position:89-467
               
               
               Cow position:chr3:73709075-73708720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:89-469
               
               
               Cow position:chr3:2675057-2674688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:89-469
               
               
               Cow position:chr3:53572724-53573091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 94

               
               
               Conread position:89-469
               
               
               Cow position:chr3:53588355-53588733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):146, 172

               
               
               Conread position:89-469
               
               
               Cow position:chr3:59474150-59473775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:263
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):100, 77

               
               
               Conread position:89-472
               
               
               Cow position:chr3:14552903-14552535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:89-472
               
               
               Cow position:chr3:65237052-65236675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):324, 77

               
               
               Conread position:89-472
               
               
               Cow position:chr3:79292856-79292491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):141, 14

               
               
               Conread position:89-473
               
               
               Cow position:chr3:18459500-18459865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:89-473
               
               
               Cow position:chr3:24935393-24935010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:266
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):169, 75

               
               
               Conread position:89-473
               
               
               Cow position:chr3:33698759-33698380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):172, 83

               
               
               Conread position:89-473
               
               
               Cow position:chr3:48252913-48252551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 89

               
               
               Conread position:89-473
               
               
               Cow position:chr3:49382977-49382607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):173, 71

               
               
               Conread position:89-473
               
               
               Cow position:chr3:49460898-49461282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 259

               
               
               Conread position:89-473
               
               
               Cow position:chr3:52017799-52017415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:268
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):77, 95

               
               
               Conread position:89-473
               
               
               Cow position:chr3:57577725-57577355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):169, 94

               
               
               Conread position:89-473
               
               
               Cow position:chr3:66375347-66374984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 5

               
               
               Conread position:89-473
               
               
               Cow position:chr3:68145815-68146169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:273
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):322, 75

               
               
               Conread position:89-473
               
               
               Cow position:chr3:72391110-72390738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):319, 77

               
               
               Conread position:89-473
               
               
               Cow position:chr3:79902524-79902158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:90-347
               
               
               Cow position:chr3:83215289-83215033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):173, 228

               
               
               Conread position:91-365
               
               
               Cow position:chr3:17134360-17134102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:186
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:91-467
               
               
               Cow position:chr3:81471070-81471436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):155, 82

               
               
               Conread position:92-339
               
               
               Cow position:chr3:55712465-55712213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:185
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):72, 171

               
               
               Conread position:92-343
               
               
               Cow position:chr3:4319736-4319494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:179
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:92-347
               
               
               Cow position:chr3:45211326-45211075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):72, 104

               
               
               Conread position:92-386
               
               
               Cow position:chr3:71238179-71237899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:211
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:92-446
               
               
               Cow position:chr3:31309329-31309680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 83

               
               
               Conread position:92-467
               
               
               Cow position:chr3:76172644-76173001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 27

               
               
               Conread position:92-473
               
               
               Cow position:chr3:83815762-83816146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):322, 168

               
               
               Conread position:92-474
               
               
               Cow position:chr3:37599403-37599762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:265
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:92-474
               
               
               Cow position:chr3:49679157-49678775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:259
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):127, 81

               
               
               Conread position:94-404
               
               
               Cow position:chr3:74500266-74499948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 261

               
               
               Conread position:95-298
               
               
               Cow position:chr3:55819780-55819572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:147
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:95-308
               
               
               Cow position:chr3:74502303-74502507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:95-318
               
               
               Cow position:chr3:78896669-78896454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:95-361
               
               
               Cow position:chr3:55106417-55106676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:95-467
               
               
               Cow position:chr3:7566395-7566755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 138

               
               
               Conread position:95-469
               
               
               Cow position:chr3:25690815-25690452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:95-471
               
               
               Cow position:chr3:4457049-4457419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 71

               
               
               Conread position:95-472
               
               
               Cow position:chr3:4050215-4049859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:270
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):316, 43

               
               
               Conread position:95-473
               
               
               Cow position:chr3:13899425-13899798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:95-473
               
               
               Cow position:chr3:22089255-22089627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 71

               
               
               Conread position:95-473
               
               
               Cow position:chr3:53592667-53593044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 65

               
               
               Conread position:95-474
               
               
               Cow position:chr3:45524289-45523919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:97-462
               
               
               Cow position:chr3:42423306-42423665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 67

               
               
               Conread position:97-468
               
               
               Cow position:chr3:77271257-77271618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:259
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):286, 84

               
               
               Conread position:98-306
               
               
               Cow position:chr3:26739395-26739603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:147
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):57, 80

               
               
               Conread position:98-414
               
               
               Cow position:chr3:27545800-27546119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):132, 205

               
               
               Conread position:100-473
               
               
               Cow position:chr3:5100755-5101105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:112-370
               
               
               Cow position:chr3:8393944-8393697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):148, 0

               
               
               Conread position:112-417
               
               
               Cow position:chr3:29360141-29360424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:209
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):227, 62

               
               
               Conread position:112-428
               
               
               Cow position:chr3:45648140-45647835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):54, 75

               
               
               Conread position:112-473
               
               
               Cow position:chr3:36671986-36672349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 53

               
               
               Conread position:112-474
               
               
               Cow position:chr3:49218309-49218653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):174, 53

               
               
               Conread position:115-387
               
               
               Cow position:chr3:16362733-16362998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):264, 62

               
               
               Conread position:115-434
               
               
               Cow position:chr3:65800594-65800289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 79

               
               
               Conread position:115-473
               
               
               Cow position:chr3:19708102-19708442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:130-473
               
               
               Cow position:chr3:27286216-27285884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:133-383
               
               
               Cow position:chr3:52650544-52650788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):127, 0

               
               
               Conread position:134-430
               
               
               Cow position:chr3:49787397-49787108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):123, 42

               
               
               Conread position:160-472
               
               
               Cow position:chr3:7858328-7858008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 6

               
               
               Conread position:178-473
               
               
               Cow position:chr3:20129886-20129602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):211, 8

               
               
               Conread position:178-473
               
               
               Cow position:chr3:74088228-74088506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:216
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:178-473
               
               
               Cow position:chr3:79591940-79592233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):169, 0

               
               
               Conread position:183-307
               
               
               Cow position:chr3:79092455-79092579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:95
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:183-473
               
               
               Cow position:chr3:8717189-8716902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):164, 0

               
               
               Conread position:183-473
               
               
               Cow position:chr3:61361343-61361072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):165, 128

               
               
               Conread position:186-381
               
               
               Cow position:chr3:5044869-5045063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):161, 0

               
               
               Conread position:186-473
               
               
               Cow position:chr3:31298219-31298502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):161, 0

               
               
               Conread position:190-471
               
               
               Cow position:chr3:61857433-61857153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 0

               
               
               Conread position:190-473
               
               
               Cow position:chr3:72777178-72776895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 64

               
               
               Conread position:195-471
               
               
               Cow position:chr3:48852036-48852304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):152, 0

               
               
               Conread position:197-416
               
               
               Cow position:chr3:18855018-18854805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:170
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:204-473
               
               
               Cow position:chr3:31056083-31056347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:223-420
               
               
               Cow position:chr3:59392207-59392399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:235-473
               
               
               Cow position:chr3:13512853-13513079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:247-417
               
               
               Cow position:chr3:58135160-58135323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:252-473
               
               
               Cow position:chr3:6403167-6402952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:252-473
               
               
               Cow position:chr3:66978714-66978498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:83-473
               
               
               Cow position:chr4:20139464-20139857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:276
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):93, 83

               
               
               Conread position:88-409
               
               
               Cow position:chr4:46060988-46060681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:229
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:88-469
               
               
               Cow position:chr4:12591168-12591535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 87

               
               
               Conread position:89-299
               
               
               Cow position:chr4:65950700-65950488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):174, 87

               
               
               Conread position:89-304
               
               
               Cow position:chr4:66547723-66547932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:89-308
               
               
               Cow position:chr4:2885495-2885713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):60, 90

               
               
               Conread position:89-308
               
               
               Cow position:chr4:34369405-34369622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):153, 0

               
               
               Conread position:89-321
               
               
               Cow position:chr4:31505979-31506214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):77, 159

               
               
               Conread position:89-323
               
               
               Cow position:chr4:48143883-48143645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):76, 205

               
               
               Conread position:89-345
               
               
               Cow position:chr4:29106952-29106697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:89-346
               
               
               Cow position:chr4:13973925-13974175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:179
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):59, 86

               
               
               Conread position:89-366
               
               
               Cow position:chr4:16762681-16762954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):65, 90

               
               
               Conread position:89-386
               
               
               Cow position:chr4:65432195-65431903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):208, 163

               
               
               Conread position:89-387
               
               
               Cow position:chr4:12127594-12127886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):114, 78

               
               
               Conread position:89-401
               
               
               Cow position:chr4:45367784-45367479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:218
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):76, 89

               
               
               Conread position:89-406
               
               
               Cow position:chr4:32726269-32725962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:89-406
               
               
               Cow position:chr4:37691267-37691570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:219
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):75, 99

               
               
               Conread position:89-409
               
               
               Cow position:chr4:27665058-27664740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 71

               
               
               Conread position:89-412
               
               
               Cow position:chr4:50203799-50203479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:218
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):61, 90

               
               
               Conread position:89-416
               
               
               Cow position:chr4:5460816-5461125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:237
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):75, 142

               
               
               Conread position:89-416
               
               
               Cow position:chr4:21874847-21874562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:89-420
               
               
               Cow position:chr4:203098-203424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:227
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):300, 75

               
               
               Conread position:89-428
               
               
               Cow position:chr4:18095629-18095960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):173, 40

               
               
               Conread position:89-432
               
               
               Cow position:chr4:37343172-37342829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 152

               
               
               Conread position:89-442
               
               
               Cow position:chr4:45775293-45775639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 94

               
               
               Conread position:89-454
               
               
               Cow position:chr4:43148456-43148094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 144

               
               
               Conread position:89-463
               
               
               Cow position:chr4:19008091-19007721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:258
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):77, 93

               
               
               Conread position:89-464
               
               
               Cow position:chr4:66256731-66256366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):133, 77

               
               
               Conread position:89-467
               
               
               Cow position:chr4:37935240-37935604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:89-468
               
               
               Cow position:chr4:20957-20603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:265
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:89-469
               
               
               Cow position:chr4:17832856-17833230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 144

               
               
               Conread position:89-469
               
               
               Cow position:chr4:25197450-25197822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:89-469
               
               
               Cow position:chr4:44782419-44782049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:89-471
               
               
               Cow position:chr4:25806944-25806572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 22

               
               
               Conread position:89-472
               
               
               Cow position:chr4:12004259-12003895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:89-472
               
               
               Cow position:chr4:67445190-67444817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:89-473
               
               
               Cow position:chr4:13590128-13589765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:271
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):16, 27

               
               
               Conread position:89-473
               
               
               Cow position:chr4:15905145-15904772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 110

               
               
               Conread position:89-473
               
               
               Cow position:chr4:40414583-40414960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 95

               
               
               Conread position:89-473
               
               
               Cow position:chr4:42673221-42672842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 75

               
               
               Conread position:89-473
               
               
               Cow position:chr4:51903650-51903272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 84

               
               
               Conread position:89-478
               
               
               Cow position:chr4:28836581-28836198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 106

               
               
               Conread position:89-486
               
               
               Cow position:chr4:34208982-34208587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 78

               
               
               Conread position:90-370
               
               
               Cow position:chr4:41602893-41602622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):74, 105

               
               
               Conread position:92-332
               
               
               Cow position:chr4:4843202-4843440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):87, 71

               
               
               Conread position:92-347
               
               
               Cow position:chr4:13284426-13284172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:186
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):130, 161

               
               
               Conread position:92-406
               
               
               Cow position:chr4:23445004-23445313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 87

               
               
               Conread position:92-416
               
               
               Cow position:chr4:4084408-4084718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:224
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:92-417
               
               
               Cow position:chr4:21371433-21371127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):74, 92

               
               
               Conread position:92-417
               
               
               Cow position:chr4:59785364-59785043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 83

               
               
               Conread position:92-454
               
               
               Cow position:chr4:60370784-60371142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 21

               
               
               Conread position:92-469
               
               
               Cow position:chr4:36893401-36893031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 105

               
               
               Conread position:92-473
               
               
               Cow position:chr4:22138180-22138563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 175

               
               
               Conread position:92-473
               
               
               Cow position:chr4:43865815-43866176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 43

               
               
               Conread position:92-473
               
               
               Cow position:chr4:56239818-56240175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:263
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):329, 71

               
               
               Conread position:92-489
               
               
               Cow position:chr4:23564057-23563654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:257
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):48, 265

               
               
               Conread position:95-340
               
               
               Cow position:chr4:65175106-65175341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):240, 78

               
               
               Conread position:95-403
               
               
               Cow position:chr4:35939968-35940270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:95-406
               
               
               Cow position:chr4:55395802-55395506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):69, 89

               
               
               Conread position:95-424
               
               
               Cow position:chr4:17052554-17052876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:233
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):73, 166

               
               
               Conread position:95-465
               
               
               Cow position:chr4:22236445-22236799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 30

               
               
               Conread position:95-469
               
               
               Cow position:chr4:508870-509223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:95-473
               
               
               Cow position:chr4:22101226-22101594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:266
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):215, 71

               
               
               Conread position:98-473
               
               
               Cow position:chr4:37619852-37620216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):106, 69

               
               
               Conread position:100-284
               
               
               Cow position:chr4:18756468-18756288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):64, 94

               
               
               Conread position:102-416
               
               
               Cow position:chr4:52748422-52748730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 160

               
               
               Conread position:106-473
               
               
               Cow position:chr4:21058348-21058719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 148

               
               
               Conread position:111-446
               
               
               Cow position:chr4:49424849-49424542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:240
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:112-346
               
               
               Cow position:chr4:36929338-36929110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:112-416
               
               
               Cow position:chr4:17660165-17660477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:218
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):64, 244

               
               
               Conread position:115-401
               
               
               Cow position:chr4:45583100-45583385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):142, 61

               
               
               Conread position:115-405
               
               
               Cow position:chr4:51867015-51866733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:210
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):63, 51

               
               
               Conread position:115-473
               
               
               Cow position:chr4:58822896-58823249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:226
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):227, 61

               
               
               Conread position:115-473
               
               
               Cow position:chr4:59871498-59871176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:260
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):75, 50

               
               
               Conread position:116-473
               
               
               Cow position:chr4:14920012-14919681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:248
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):339, 60

               
               
               Conread position:129-399
               
               
               Cow position:chr4:49089796-49089539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):49, 132

               
               
               Conread position:163-478
               
               
               Cow position:chr4:39009937-39009635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):235, 20

               
               
               Conread position:171-468
               
               
               Cow position:chr4:34171607-34171893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:177-385
               
               
               Cow position:chr4:11004763-11004957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:177-416
               
               
               Cow position:chr4:57147275-57147038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:175
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):171, 10

               
               
               Conread position:178-381
               
               
               Cow position:chr4:23911626-23911826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:158
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:180-354
               
               
               Cow position:chr4:29238082-29238254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:128
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:182-473
               
               
               Cow position:chr4:55270804-55271086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 21

               
               
               Conread position:186-473
               
               
               Cow position:chr4:68944221-68944505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:195-468
               
               
               Cow position:chr4:26163032-26163297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:197
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):216, 92

               
               
               Conread position:197-348
               
               
               Cow position:chr4:6413247-6413396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):10, 46

               
               
               Conread position:200-406
               
               
               Cow position:chr4:36396187-36396386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):95, 49

               
               
               Conread position:219-473
               
               
               Cow position:chr4:9795454-9795700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:186
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:223-366
               
               
               Cow position:chr4:61869926-61870064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:108
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:247-441
               
               
               Cow position:chr4:10703789-10703982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:154
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:247-474
               
               
               Cow position:chr4:1404937-1404710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):172, 100

               
               
               Conread position:75-469
               
               
               Cow position:chr5:6503791-6504158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:276
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):112, 13

               
               
               Conread position:86-416
               
               
               Cow position:chr5:458570-458233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:241
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):145, 79

               
               
               Conread position:87-482
               
               
               Cow position:chr5:13691487-13691880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 108

               
               
               Conread position:88-314
               
               
               Cow position:chr5:19335702-19335932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):82, 70

               
               
               Conread position:88-325
               
               
               Cow position:chr5:35459215-35459444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:168
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):76, 89

               
               
               Conread position:88-414
               
               
               Cow position:chr5:5257207-5257535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:242
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):9, 116

               
               
               Conread position:88-468
               
               
               Cow position:chr5:14550505-14550877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:88-472
               
               
               Cow position:chr5:33414330-33414700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:88-473
               
               
               Cow position:chr5:15479205-15478812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 84

               
               
               Conread position:89-281
               
               
               Cow position:chr5:23678624-23678813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):77, 17

               
               
               Conread position:89-285
               
               
               Cow position:chr5:33560656-33560847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:89-285
               
               
               Cow position:chr5:53710611-53710807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:141
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):168, 92

               
               
               Conread position:89-303
               
               
               Cow position:chr5:63426927-63427137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):173, 0

               
               
               Conread position:89-303
               
               
               Cow position:chr5:64140616-64140399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):37, 31

               
               
               Conread position:89-304
               
               
               Cow position:chr5:45273423-45273633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:89-318
               
               
               Cow position:chr5:65883694-65883922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:155
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:89-323
               
               
               Cow position:chr5:36255179-36255411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):112, 162

               
               
               Conread position:89-325
               
               
               Cow position:chr5:12761040-12761270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:171
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):167, 77

               
               
               Conread position:89-339
               
               
               Cow position:chr5:16214765-16214524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):75, 163

               
               
               Conread position:89-346
               
               
               Cow position:chr5:30178426-30178681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):77, 108

               
               
               Conread position:89-386
               
               
               Cow position:chr5:48154387-48154682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:204
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):52, 221

               
               
               Conread position:89-397
               
               
               Cow position:chr5:11427155-11427463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 87

               
               
               Conread position:89-406
               
               
               Cow position:chr5:36868815-36868516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:89-406
               
               
               Cow position:chr5:64137334-64137022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:219
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):67, 95

               
               
               Conread position:89-407
               
               
               Cow position:chr5:28926102-28926415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 100

               
               
               Conread position:89-410
               
               
               Cow position:chr5:41165166-41164855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:231
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):75, 95

               
               
               Conread position:89-411
               
               
               Cow position:chr5:43992402-43992091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:224
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):75, 88

               
               
               Conread position:89-412
               
               
               Cow position:chr5:29353047-29353364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:236
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):76, 147

               
               
               Conread position:89-417
               
               
               Cow position:chr5:54350283-54350601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 88

               
               
               Conread position:89-431
               
               
               Cow position:chr5:32140630-32140959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 86

               
               
               Conread position:89-455
               
               
               Cow position:chr5:40889219-40889561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:89-468
               
               
               Cow position:chr5:39447457-39447827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 52

               
               
               Conread position:89-469
               
               
               Cow position:chr5:26094088-26094462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 95

               
               
               Conread position:89-469
               
               
               Cow position:chr5:59082116-59082484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 85

               
               
               Conread position:89-470
               
               
               Cow position:chr5:64523785-64524172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 98

               
               
               Conread position:89-472
               
               
               Cow position:chr5:50723124-50722755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:89-473
               
               
               Cow position:chr5:16893693-16894065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):148, 0

               
               
               Conread position:89-473
               
               
               Cow position:chr5:32153241-32153612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:89-473
               
               
               Cow position:chr5:39094628-39094257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:89-473
               
               
               Cow position:chr5:41951018-41951377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:264
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:89-473
               
               
               Cow position:chr5:42845515-42845896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 77

               
               
               Conread position:89-473
               
               
               Cow position:chr5:47313551-47313177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 52

               
               
               Conread position:89-473
               
               
               Cow position:chr5:50821861-50821492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 67

               
               
               Conread position:89-474
               
               
               Cow position:chr5:55068784-55068424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:264
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):230, 77

               
               
               Conread position:90-385
               
               
               Cow position:chr5:64758690-64758972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):75, 176

               
               
               Conread position:92-312
               
               
               Cow position:chr5:7057326-7057541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):164, 72

               
               
               Conread position:92-312
               
               
               Cow position:chr5:11539975-11540188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:92-347
               
               
               Cow position:chr5:51935265-51935011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):164, 74

               
               
               Conread position:92-397
               
               
               Cow position:chr5:2309481-2309785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):168, 74

               
               
               Conread position:92-416
               
               
               Cow position:chr5:11668110-11668417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:233
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):122, 81

               
               
               Conread position:92-469
               
               
               Cow position:chr5:58793532-58793907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):139, 193

               
               
               Conread position:92-473
               
               
               Cow position:chr5:31481223-31480857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 74

               
               
               Conread position:92-473
               
               
               Cow position:chr5:54713657-54714038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):162, 18

               
               
               Conread position:94-298
               
               
               Cow position:chr5:56680324-56680121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):70, 90

               
               
               Conread position:94-419
               
               
               Cow position:chr5:34885090-34885397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:95-379
               
               
               Cow position:chr5:45409395-45409123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):261, 91

               
               
               Conread position:95-414
               
               
               Cow position:chr5:20128124-20127817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:95-462
               
               
               Cow position:chr5:61576617-61576255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 70

               
               
               Conread position:95-469
               
               
               Cow position:chr5:48829226-48828855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):225, 79

               
               
               Conread position:95-470
               
               
               Cow position:chr5:37190025-37190386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:95-473
               
               
               Cow position:chr5:3281907-3281535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 84

               
               
               Conread position:96-417
               
               
               Cow position:chr5:49685200-49685521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):184, 68

               
               
               Conread position:96-464
               
               
               Cow position:chr5:58856174-58855815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):150, 68

               
               
               Conread position:97-347
               
               
               Cow position:chr5:28957544-28957788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:180
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):90, 77

               
               
               Conread position:97-473
               
               
               Cow position:chr5:18574245-18573874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 87

               
               
               Conread position:98-358
               
               
               Cow position:chr5:71723144-71722879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):53, 255

               
               
               Conread position:98-416
               
               
               Cow position:chr5:43737894-43738187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):92, 53

               
               
               Conread position:98-469
               
               
               Cow position:chr5:17028164-17027806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:248
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):139, 0

               
               
               Conread position:100-387
               
               
               Cow position:chr5:18899043-18898773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:202
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:103-345
               
               
               Cow position:chr5:12866754-12866998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:180
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):112, 60

               
               
               Conread position:107-473
               
               
               Cow position:chr5:54404830-54405190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 20

               
               
               Conread position:107-474
               
               
               Cow position:chr5:34528611-34528267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 59

               
               
               Conread position:111-315
               
               
               Cow position:chr5:51800916-51801113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:112-346
               
               
               Cow position:chr5:3668953-3668727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):135, 96

               
               
               Conread position:115-347
               
               
               Cow position:chr5:41452613-41452838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:163
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):48, 127

               
               
               Conread position:115-386
               
               
               Cow position:chr5:29212996-29212739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:115-403
               
               
               Cow position:chr5:18090790-18090501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):51, 109

               
               
               Conread position:115-410
               
               
               Cow position:chr5:36855256-36854979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:115-416
               
               
               Cow position:chr5:52000275-51999980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:115-473
               
               
               Cow position:chr5:21039926-21040269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:115-473
               
               
               Cow position:chr5:72564816-72564463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 51

               
               
               Conread position:118-452
               
               
               Cow position:chr5:53855749-53855429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:239
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):47, 60

               
               
               Conread position:149-370
               
               
               Cow position:chr5:74019752-74019964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):112, 17

               
               
               Conread position:163-404
               
               
               Cow position:chr5:51490753-51490981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:168-446
               
               
               Cow position:chr5:4506951-4507230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 181

               
               
               Conread position:177-473
               
               
               Cow position:chr5:22565626-22565342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:220
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):195, 10

               
               
               Conread position:177-484
               
               
               Cow position:chr5:65932936-65933236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):278, 83

               
               
               Conread position:178-344
               
               
               Cow position:chr5:44028753-44028914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:178-469
               
               
               Cow position:chr5:45706036-45705755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:178-473
               
               
               Cow position:chr5:21525161-21524868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:186-386
               
               
               Cow position:chr5:71158278-71158473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:186-427
               
               
               Cow position:chr5:61600402-61600162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:186
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):160, 0

               
               
               Conread position:187-368
               
               
               Cow position:chr5:74610710-74610883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:188-425
               
               
               Cow position:chr5:63388775-63388547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:179
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:190-374
               
               
               Cow position:chr5:4322388-4322214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:190-432
               
               
               Cow position:chr5:26370674-26370452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:190-467
               
               
               Cow position:chr5:31469603-31469873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:190-473
               
               
               Cow position:chr5:28330354-28330625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:196-472
               
               
               Cow position:chr5:23140600-23140873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:208
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):15, 92

               
               
               Conread position:213-473
               
               
               Cow position:chr5:38853322-38853063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):139, 0

               
               
               Conread position:215-473
               
               
               Cow position:chr5:54875725-54875973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):45, 101

               
               
               Conread position:217-462
               
               
               Cow position:chr5:33661809-33661569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:217-473
               
               
               Cow position:chr5:50729452-50729203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:228-400
               
               
               Cow position:chr5:15412639-15412469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:248-413
               
               
               Cow position:chr5:56201195-56201357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:126
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:33-469
               
               
               Cow position:chr6:31526198-31525774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:300
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):31, 46

               
               
               Conread position:88-366
               
               
               Cow position:chr6:59104692-59104433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:88-393
               
               
               Cow position:chr6:528191-528478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:203
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:88-422
               
               
               Cow position:chr6:34475468-34475774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:236
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:89-246
               
               
               Cow position:chr6:2585034-2584882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:89-298
               
               
               Cow position:chr6:10039815-10039609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:89-302
               
               
               Cow position:chr6:21514516-21514735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):79, 95

               
               
               Conread position:89-309
               
               
               Cow position:chr6:36189789-36189574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:155
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:89-312
               
               
               Cow position:chr6:582181-582397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:156
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:89-312
               
               
               Cow position:chr6:23401901-23402115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:89-325
               
               
               Cow position:chr6:60118242-60118011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:89-329
               
               
               Cow position:chr6:38610060-38609825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:167
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):165, 87

               
               
               Conread position:89-329
               
               
               Cow position:chr6:47833029-47833257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:163
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):75, 99

               
               
               Conread position:89-346
               
               
               Cow position:chr6:60740106-60739859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:89-365
               
               
               Cow position:chr6:35993676-35993403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):166, 87

               
               
               Conread position:89-379
               
               
               Cow position:chr6:47799385-47799110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:198
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:89-386
               
               
               Cow position:chr6:12091901-12092179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:203
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:89-388
               
               
               Cow position:chr6:8787945-8788234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:218
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):147, 104

               
               
               Conread position:89-391
               
               
               Cow position:chr6:67456810-67456503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:227
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):133, 77

               
               
               Conread position:89-396
               
               
               Cow position:chr6:20157425-20157120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 77

               
               
               Conread position:89-398
               
               
               Cow position:chr6:31261086-31260780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):146, 87

               
               
               Conread position:89-403
               
               
               Cow position:chr6:57405033-57405336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):174, 76

               
               
               Conread position:89-413
               
               
               Cow position:chr6:38207398-38207717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 61

               
               
               Conread position:89-417
               
               
               Cow position:chr6:66434041-66433722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):143, 14

               
               
               Conread position:89-463
               
               
               Cow position:chr6:4864455-4864810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:89-473
               
               
               Cow position:chr6:10176210-10176580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):168, 74

               
               
               Conread position:89-473
               
               
               Cow position:chr6:13367377-13367019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:262
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):127, 0

               
               
               Conread position:89-473
               
               
               Cow position:chr6:15937763-15938146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):220, 68

               
               
               Conread position:89-473
               
               
               Cow position:chr6:16700353-16699980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):153, 71

               
               
               Conread position:89-473
               
               
               Cow position:chr6:18048932-18049307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):133, 77

               
               
               Conread position:89-473
               
               
               Cow position:chr6:35181165-35181534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 60

               
               
               Conread position:89-473
               
               
               Cow position:chr6:35726186-35725810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:248
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):104, 83

               
               
               Conread position:89-473
               
               
               Cow position:chr6:60057563-60057947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):287, 77

               
               
               Conread position:89-473
               
               
               Cow position:chr6:61631517-61631895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):259, 85

               
               
               Conread position:89-484
               
               
               Cow position:chr6:6060480-6060850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:89-490
               
               
               Cow position:chr6:48567260-48567640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):190, 64

               
               
               Conread position:91-469
               
               
               Cow position:chr6:11169788-11169430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):243, 24

               
               
               Conread position:92-315
               
               
               Cow position:chr6:60667502-60667292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:92-408
               
               
               Cow position:chr6:4468857-4468530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:240
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):72, 68

               
               
               Conread position:92-432
               
               
               Cow position:chr6:61113856-61113509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 36

               
               
               Conread position:92-473
               
               
               Cow position:chr6:6343515-6343146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):117, 73

               
               
               Conread position:92-473
               
               
               Cow position:chr6:47305430-47305046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:270
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):72, 122

               
               
               Conread position:93-416
               
               
               Cow position:chr6:46865504-46865824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:229
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):161, 65

               
               
               Conread position:94-423
               
               
               Cow position:chr6:50984309-50983976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):254, 70

               
               
               Conread position:95-306
               
               
               Cow position:chr6:44127697-44127486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):69, 170

               
               
               Conread position:95-308
               
               
               Cow position:chr6:16266810-16266597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):87, 71

               
               
               Conread position:95-308
               
               
               Cow position:chr6:43134853-43135066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:152
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):143, 79

               
               
               Conread position:95-345
               
               
               Cow position:chr6:67323395-67323161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:175
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:95-387
               
               
               Cow position:chr6:16191764-16191471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:212
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):71, 236

               
               
               Conread position:95-417
               
               
               Cow position:chr6:37149275-37148973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:95-464
               
               
               Cow position:chr6:60474216-60473861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 69

               
               
               Conread position:95-473
               
               
               Cow position:chr6:28148342-28147969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:260
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):49, 180

               
               
               Conread position:95-473
               
               
               Cow position:chr6:32126142-32125785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:95-473
               
               
               Cow position:chr6:48170024-48169663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):212, 68

               
               
               Conread position:96-318
               
               
               Cow position:chr6:53841421-53841631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:96-342
               
               
               Cow position:chr6:4691890-4692136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:182
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):73, 162

               
               
               Conread position:96-363
               
               
               Cow position:chr6:17333968-17334229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):60, 65

               
               
               Conread position:96-464
               
               
               Cow position:chr6:50747083-50746704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 260

               
               
               Conread position:96-473
               
               
               Cow position:chr6:44099171-44098806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):188, 16

               
               
               Conread position:97-347
               
               
               Cow position:chr6:31854437-31854195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:97-473
               
               
               Cow position:chr6:25407308-25407688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):286, 70

               
               
               Conread position:98-347
               
               
               Cow position:chr6:26450395-26450160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:99-473
               
               
               Cow position:chr6:12338075-12337703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 220

               
               
               Conread position:101-347
               
               
               Cow position:chr6:19013151-19012912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):63, 161

               
               
               Conread position:112-403
               
               
               Cow position:chr6:59069555-59069840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:204
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):52, 63

               
               
               Conread position:112-469
               
               
               Cow position:chr6:28483084-28482737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 52

               
               
               Conread position:113-398
               
               
               Cow position:chr6:61137443-61137158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):256, 70

               
               
               Conread position:115-312
               
               
               Cow position:chr6:57299081-57298890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:115-400
               
               
               Cow position:chr6:47989238-47988981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:115-414
               
               
               Cow position:chr6:5445689-5445406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):49, 102

               
               
               Conread position:115-416
               
               
               Cow position:chr6:60239329-60239613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:217
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:115-473
               
               
               Cow position:chr6:28148901-28148564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:240
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):297, 61

               
               
               Conread position:115-473
               
               
               Cow position:chr6:36928727-36928371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 149

               
               
               Conread position:115-482
               
               
               Cow position:chr6:38771351-38771007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:250
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):322, 61

               
               
               Conread position:118-406
               
               
               Cow position:chr6:60442477-60442204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:211
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:130-393
               
               
               Cow position:chr6:52025599-52025857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:191
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):35, 54

               
               
               Conread position:134-406
               
               
               Cow position:chr6:48344380-48344113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 34

               
               
               Conread position:144-411
               
               
               Cow position:chr6:1907580-1907319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):242, 93

               
               
               Conread position:177-416
               
               
               Cow position:chr6:14201706-14201473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:177
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:178-386
               
               
               Cow position:chr6:33277048-33276844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:178-405
               
               
               Cow position:chr6:65702398-65702615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):108, 8

               
               
               Conread position:180-424
               
               
               Cow position:chr6:54884907-54885146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:183
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):128, 0

               
               
               Conread position:183-432
               
               
               Cow position:chr6:7103229-7103476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:189
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):206, 164

               
               
               Conread position:187-474
               
               
               Cow position:chr6:10605684-10605401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):241, 55

               
               
               Conread position:188-473
               
               
               Cow position:chr6:3978667-3978943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:207
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):131, 99

               
               
               Conread position:190-386
               
               
               Cow position:chr6:48187586-48187776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:142
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:190-405
               
               
               Cow position:chr6:59620662-59620455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:156
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:217-399
               
               
               Cow position:chr6:7989443-7989621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):130, 0

               
               
               Conread position:217-403
               
               
               Cow position:chr6:2896722-2896539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:218-428
               
               
               Cow position:chr6:61978209-61978418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):43, 54

               
               
               Conread position:222-392
               
               
               Cow position:chr6:46245356-46245524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:131
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):44, 82

               
               
               Conread position:239-377
               
               
               Cow position:chr6:6226970-6226838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:109
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:247-428
               
               
               Cow position:chr6:66087893-66087718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:247-440
               
               
               Cow position:chr6:65676197-65676008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:158
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:247-473
               
               
               Cow position:chr6:65711767-65711545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:181
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-400
               
               
               Cow position:chr7:44986756-44986451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:228
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):11, 181

               
               
               Conread position:88-332
               
               
               Cow position:chr7:9781629-9781871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:173
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):78, 90

               
               
               Conread position:88-384
               
               
               Cow position:chr7:5723798-5723506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:194
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):76, 100

               
               
               Conread position:88-435
               
               
               Cow position:chr7:48721808-48722147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 24

               
               
               Conread position:89-236
               
               
               Cow position:chr7:33914065-33913918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:108
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):76, 89

               
               
               Conread position:89-309
               
               
               Cow position:chr7:14524573-14524359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):75, 88

               
               
               Conread position:89-325
               
               
               Cow position:chr7:21122165-21122393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):230, 78

               
               
               Conread position:89-337
               
               
               Cow position:chr7:2579143-2579389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):127, 88

               
               
               Conread position:89-347
               
               
               Cow position:chr7:46051750-46051500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):16, 95

               
               
               Conread position:89-367
               
               
               Cow position:chr7:61790258-61790529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:203
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):74, 86

               
               
               Conread position:89-386
               
               
               Cow position:chr7:52536159-52536443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:199
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):70, 117

               
               
               Conread position:89-387
               
               
               Cow position:chr7:32079546-32079265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):163, 0

               
               
               Conread position:89-387
               
               
               Cow position:chr7:51039526-51039238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:208
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):40, 53

               
               
               Conread position:89-393
               
               
               Cow position:chr7:59075944-59075653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):75, 116

               
               
               Conread position:89-417
               
               
               Cow position:chr7:37455412-37455098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:234
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):133, 77

               
               
               Conread position:89-421
               
               
               Cow position:chr7:54513311-54513649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 78

               
               
               Conread position:89-424
               
               
               Cow position:chr7:27132861-27133189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:212
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:89-432
               
               
               Cow position:chr7:41293652-41293988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):322, 75

               
               
               Conread position:89-438
               
               
               Cow position:chr7:33386016-33385689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:243
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:89-454
               
               
               Cow position:chr7:22624008-22624363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:89-461
               
               
               Cow position:chr7:53097685-53097331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 99

               
               
               Conread position:89-464
               
               
               Cow position:chr7:9136932-9136571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 170

               
               
               Conread position:89-467
               
               
               Cow position:chr7:18388305-18388670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):367, 98

               
               
               Conread position:89-469
               
               
               Cow position:chr7:17757127-17756769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:89-469
               
               
               Cow position:chr7:64228798-64229176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):327, 106

               
               
               Conread position:89-472
               
               
               Cow position:chr7:14005975-14005596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 96

               
               
               Conread position:89-472
               
               
               Cow position:chr7:46823764-46823401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):294, 78

               
               
               Conread position:89-473
               
               
               Cow position:chr7:4418365-4418739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 43

               
               
               Conread position:89-473
               
               
               Cow position:chr7:13593862-13593495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 21

               
               
               Conread position:89-473
               
               
               Cow position:chr7:19466156-19466541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 96

               
               
               Conread position:89-473
               
               
               Cow position:chr7:23568642-23569020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 30

               
               
               Conread position:89-473
               
               
               Cow position:chr7:26485667-26485303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:271
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):75, 51

               
               
               Conread position:89-473
               
               
               Cow position:chr7:28563296-28563660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:89-473
               
               
               Cow position:chr7:32316989-32316620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 70

               
               
               Conread position:89-473
               
               
               Cow position:chr7:39939830-39939459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 98

               
               
               Conread position:89-473
               
               
               Cow position:chr7:45158216-45157853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:89-473
               
               
               Cow position:chr7:45593133-45592760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):361, 77

               
               
               Conread position:89-473
               
               
               Cow position:chr7:47547503-47547115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):239, 171

               
               
               Conread position:91-469
               
               
               Cow position:chr7:19981754-19982110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:267
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):167, 75

               
               
               Conread position:92-300
               
               
               Cow position:chr7:53579300-53579504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:92-388
               
               
               Cow position:chr7:11011591-11011887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:206
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):130, 107

               
               
               Conread position:92-410
               
               
               Cow position:chr7:1558825-1558519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:226
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:92-454
               
               
               Cow position:chr7:47931705-47932057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):165, 84

               
               
               Conread position:92-459
               
               
               Cow position:chr7:9075143-9074794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 81

               
               
               Conread position:92-473
               
               
               Cow position:chr7:42429968-42429589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 93

               
               
               Conread position:92-473
               
               
               Cow position:chr7:44454189-44454545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:92-473
               
               
               Cow position:chr7:51019869-51019516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 72

               
               
               Conread position:92-473
               
               
               Cow position:chr7:66894448-66894820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 74

               
               
               Conread position:93-473
               
               
               Cow position:chr7:42222852-42223226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 112

               
               
               Conread position:95-317
               
               
               Cow position:chr7:6608318-6608089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:95-386
               
               
               Cow position:chr7:13963299-13963010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):77, 217

               
               
               Conread position:95-393
               
               
               Cow position:chr7:43882169-43881878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:202
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:95-406
               
               
               Cow position:chr7:16022383-16022089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:95-417
               
               
               Cow position:chr7:40405933-40405628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:214
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:95-464
               
               
               Cow position:chr7:32791789-32791419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 18

               
               
               Conread position:95-469
               
               
               Cow position:chr7:47775949-47775594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:95-473
               
               
               Cow position:chr7:53551852-53552220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 71

               
               
               Conread position:95-473
               
               
               Cow position:chr7:57258935-57259310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 158

               
               
               Conread position:95-473
               
               
               Cow position:chr7:59692161-59691796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 84

               
               
               Conread position:96-406
               
               
               Cow position:chr7:48406408-48406713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:98-385
               
               
               Cow position:chr7:37697886-37697612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):66, 107

               
               
               Conread position:98-416
               
               
               Cow position:chr7:37952264-37951958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:99-473
               
               
               Cow position:chr7:35286556-35286893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:259
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:101-321
               
               
               Cow position:chr7:37184441-37184234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):62, 74

               
               
               Conread position:101-390
               
               
               Cow position:chr7:40303183-40303461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:206
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:106-393
               
               
               Cow position:chr7:41879412-41879702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:209
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):58, 164

               
               
               Conread position:112-406
               
               
               Cow position:chr7:42894515-42894238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:112-469
               
               
               Cow position:chr7:11161315-11160972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:115-451
               
               
               Cow position:chr7:11066551-11066216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 150

               
               
               Conread position:115-469
               
               
               Cow position:chr7:40952790-40953140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 146

               
               
               Conread position:115-469
               
               
               Cow position:chr7:44589785-44590118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:251
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):226, 50

               
               
               Conread position:115-473
               
               
               Cow position:chr7:22357414-22357768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:115-506
               
               
               Cow position:chr7:4892932-4892551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:274
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):49, 64

               
               
               Conread position:117-464
               
               
               Cow position:chr7:51072310-51071968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 49

               
               
               Conread position:119-412
               
               
               Cow position:chr7:40305507-40305781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:200
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):264, 54

               
               
               Conread position:123-387
               
               
               Cow position:chr7:12201868-12202110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:138-404
               
               
               Cow position:chr7:7142013-7142278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:194
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):28, 48

               
               
               Conread position:165-473
               
               
               Cow position:chr7:39401980-39401678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):263, 97

               
               
               Conread position:168-473
               
               
               Cow position:chr7:35779467-35779170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:178-473
               
               
               Cow position:chr7:23664083-23664374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):169, 0

               
               
               Conread position:183-446
               
               
               Cow position:chr7:28324640-28324382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:183-450
               
               
               Cow position:chr7:8812924-8813180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:186-417
               
               
               Cow position:chr7:22730209-22729981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):151, 0

               
               
               Conread position:186-424
               
               
               Cow position:chr7:3175950-3176179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:177
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):28, 53

               
               
               Conread position:190-339
               
               
               Cow position:chr7:47187527-47187379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):24, 13

               
               
               Conread position:190-473
               
               
               Cow position:chr7:37569034-37568748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 159

               
               
               Conread position:198-471
               
               
               Cow position:chr7:25083682-25083415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:217-345
               
               
               Cow position:chr7:40099394-40099265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:100
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:217-482
               
               
               Cow position:chr7:64269015-64269271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:247-473
               
               
               Cow position:chr7:21296523-21296295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):161, 84

               
               
               Conread position:88-344
               
               
               Cow position:chr8:20150494-20150744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:88-388
               
               
               Cow position:chr8:20926567-20926863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):53, 97

               
               
               Conread position:88-472
               
               
               Cow position:chr8:22273926-22273549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):352, 6

               
               
               Conread position:89-303
               
               
               Cow position:chr8:51694751-51694960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):75, 98

               
               
               Conread position:89-304
               
               
               Cow position:chr8:935768-935560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:89-308
               
               
               Cow position:chr8:29149802-29150023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):77, 90

               
               
               Conread position:89-310
               
               
               Cow position:chr8:53633160-53633384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):78, 71

               
               
               Conread position:89-314
               
               
               Cow position:chr8:19011732-19011952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:89-325
               
               
               Cow position:chr8:21083228-21083459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):230, 77

               
               
               Conread position:89-347
               
               
               Cow position:chr8:10764927-10765198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:190
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):87, 75

               
               
               Conread position:89-385
               
               
               Cow position:chr8:8097204-8097493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):171, 76

               
               
               Conread position:89-386
               
               
               Cow position:chr8:59043035-59043326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):67, 91

               
               
               Conread position:89-387
               
               
               Cow position:chr8:50310788-50311073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):52, 91

               
               
               Conread position:89-400
               
               
               Cow position:chr8:51403021-51402730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:212
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:89-403
               
               
               Cow position:chr8:9315965-9315669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:222
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):77, 99

               
               
               Conread position:89-404
               
               
               Cow position:chr8:46964798-46964473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):80, 142

               
               
               Conread position:89-406
               
               
               Cow position:chr8:1024022-1023716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):279, 17

               
               
               Conread position:89-414
               
               
               Cow position:chr8:47328405-47328091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:89-416
               
               
               Cow position:chr8:37571641-37571962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):320, 77

               
               
               Conread position:89-417
               
               
               Cow position:chr8:1394294-1393975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 115

               
               
               Conread position:89-417
               
               
               Cow position:chr8:7149637-7149941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:89-417
               
               
               Cow position:chr8:20783201-20783536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:236
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):104, 47

               
               
               Conread position:89-417
               
               
               Cow position:chr8:48775882-48775560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 70

               
               
               Conread position:89-422
               
               
               Cow position:chr8:16487239-16487563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:237
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):47, 91

               
               
               Conread position:89-425
               
               
               Cow position:chr8:31776254-31775920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 56

               
               
               Conread position:89-434
               
               
               Cow position:chr8:47664843-47665179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 48

               
               
               Conread position:89-454
               
               
               Cow position:chr8:19642531-19642178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:89-461
               
               
               Cow position:chr8:45781606-45781966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):300, 17

               
               
               Conread position:89-463
               
               
               Cow position:chr8:18730510-18730135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 77

               
               
               Conread position:89-467
               
               
               Cow position:chr8:9942462-9942830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:89-469
               
               
               Cow position:chr8:1187984-1187630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:268
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):76, 89

               
               
               Conread position:89-473
               
               
               Cow position:chr8:537850-538224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 107

               
               
               Conread position:89-473
               
               
               Cow position:chr8:3446034-3446386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:274
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):41, 89

               
               
               Conread position:89-473
               
               
               Cow position:chr8:10297674-10298047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:89-473
               
               
               Cow position:chr8:18049657-18049292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:89-473
               
               
               Cow position:chr8:21222255-21221890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):327, 84

               
               
               Conread position:89-473
               
               
               Cow position:chr8:28378704-28379085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:270
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):77, 118

               
               
               Conread position:89-473
               
               
               Cow position:chr8:30324386-30324016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 148

               
               
               Conread position:89-473
               
               
               Cow position:chr8:47549881-47550247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:89-473
               
               
               Cow position:chr8:53429838-53429466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 88

               
               
               Conread position:89-478
               
               
               Cow position:chr8:47342800-47342418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:89-484
               
               
               Cow position:chr8:14947233-14947624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):177, 77

               
               
               Conread position:91-473
               
               
               Cow position:chr8:46952576-46952220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:92-315
               
               
               Cow position:chr8:37347395-37347614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):72, 169

               
               
               Conread position:92-386
               
               
               Cow position:chr8:11278045-11278339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:217
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):167, 203

               
               
               Conread position:92-401
               
               
               Cow position:chr8:8668127-8668437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:228
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):76, 181

               
               
               Conread position:92-417
               
               
               Cow position:chr8:18831803-18831484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:241
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):30, 75

               
               
               Conread position:92-439
               
               
               Cow position:chr8:36249358-36249695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:241
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):62, 83

               
               
               Conread position:92-473
               
               
               Cow position:chr8:28884897-28884502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:266
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):68, 50

               
               
               Conread position:95-343
               
               
               Cow position:chr8:47284013-47284246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:95-347
               
               
               Cow position:chr8:4552691-4552956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:95-387
               
               
               Cow position:chr8:5933984-5934270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):71, 26

               
               
               Conread position:95-403
               
               
               Cow position:chr8:20157703-20158001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:224
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):68, 185

               
               
               Conread position:95-409
               
               
               Cow position:chr8:34799743-34799425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:225
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):71, 224

               
               
               Conread position:95-468
               
               
               Cow position:chr8:9641412-9641047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 10

               
               
               Conread position:95-469
               
               
               Cow position:chr8:3704680-3704314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 168

               
               
               Conread position:95-473
               
               
               Cow position:chr8:10699408-10699768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:96-473
               
               
               Cow position:chr8:29765316-29764944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 165

               
               
               Conread position:97-312
               
               
               Cow position:chr8:27731092-27730887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:97-416
               
               
               Cow position:chr8:45127648-45127951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:220
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:97-469
               
               
               Cow position:chr8:24871815-24872175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):117, 68

               
               
               Conread position:97-473
               
               
               Cow position:chr8:45493934-45493570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):214, 69

               
               
               Conread position:97-473
               
               
               Cow position:chr8:47751859-47752227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 37

               
               
               Conread position:99-473
               
               
               Cow position:chr8:13374599-13374232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:257
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):67, 104

               
               
               Conread position:101-386
               
               
               Cow position:chr8:3976285-3975995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):86, 252

               
               
               Conread position:101-462
               
               
               Cow position:chr8:24471703-24471347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 76

               
               
               Conread position:103-370
               
               
               Cow position:chr8:59438231-59438492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:196
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):62, 74

               
               
               Conread position:107-366
               
               
               Cow position:chr8:57208429-57208684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):59, 77

               
               
               Conread position:112-321
               
               
               Cow position:chr8:32332444-32332655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):18, 14

               
               
               Conread position:115-293
               
               
               Cow position:chr8:16413773-16413946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:126
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:115-411
               
               
               Cow position:chr8:40743318-40743600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):147, 58

               
               
               Conread position:115-473
               
               
               Cow position:chr8:20837161-20836816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:142-473
               
               
               Cow position:chr8:21826739-21827056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 123

               
               
               Conread position:164-459
               
               
               Cow position:chr8:38356860-38357147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 23

               
               
               Conread position:168-482
               
               
               Cow position:chr8:21224086-21224393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 19

               
               
               Conread position:177-473
               
               
               Cow position:chr8:16296776-16297070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:178-346
               
               
               Cow position:chr8:21222614-21222447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:178-473
               
               
               Cow position:chr8:37090106-37090391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 51

               
               
               Conread position:179-453
               
               
               Cow position:chr8:26961100-26960828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:200
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):202, 132

               
               
               Conread position:187-473
               
               
               Cow position:chr8:49721108-49720824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):230, 160

               
               
               Conread position:190-357
               
               
               Cow position:chr8:35932395-35932229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):140, 0

               
               
               Conread position:190-473
               
               
               Cow position:chr8:6681951-6682233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 0

               
               
               Conread position:195-386
               
               
               Cow position:chr8:51493070-51493255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:222-473
               
               
               Cow position:chr8:2621659-2621409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:185
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:226-345
               
               
               Cow position:chr8:37019940-37020059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:94
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:247-417
               
               
               Cow position:chr8:53451423-53451257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:88-312
               
               
               Cow position:chr9:11123509-11123293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):100, 78

               
               
               Conread position:88-468
               
               
               Cow position:chr9:23269005-23269372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:245
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):100, 74

               
               
               Conread position:88-473
               
               
               Cow position:chr9:16300593-16300217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:272
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):76, 109

               
               
               Conread position:88-473
               
               
               Cow position:chr9:35375400-35375772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 79

               
               
               Conread position:89-285
               
               
               Cow position:chr9:35105813-35105613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):173, 78

               
               
               Conread position:89-299
               
               
               Cow position:chr9:8901250-8901042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:150
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):90, 172

               
               
               Conread position:89-318
               
               
               Cow position:chr9:10650323-10650104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:89-318
               
               
               Cow position:chr9:37677871-37678088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):168, 17

               
               
               Conread position:89-325
               
               
               Cow position:chr9:19493489-19493255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):129, 172

               
               
               Conread position:89-341
               
               
               Cow position:chr9:17799603-17799850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:173
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):74, 172

               
               
               Conread position:89-341
               
               
               Cow position:chr9:26440835-26440576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:89-341
               
               
               Cow position:chr9:44833986-44833745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:89-347
               
               
               Cow position:chr9:27279286-27279544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):75, 86

               
               
               Conread position:89-347
               
               
               Cow position:chr9:30477798-30477558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):141, 68

               
               
               Conread position:89-384
               
               
               Cow position:chr9:22638079-22638362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:198
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:89-388
               
               
               Cow position:chr9:33597963-33598247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:214
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:89-403
               
               
               Cow position:chr9:1751315-1751616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):294, 78

               
               
               Conread position:89-403
               
               
               Cow position:chr9:47472663-47472977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:219
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):77, 17

               
               
               Conread position:89-404
               
               
               Cow position:chr9:41282992-41283310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:230
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):167, 82

               
               
               Conread position:89-406
               
               
               Cow position:chr9:44915120-44914812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):60, 112

               
               
               Conread position:89-415
               
               
               Cow position:chr9:17310585-17310269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:89-422
               
               
               Cow position:chr9:22696199-22696516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):241, 77

               
               
               Conread position:89-442
               
               
               Cow position:chr9:50977276-50976926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 98

               
               
               Conread position:89-459
               
               
               Cow position:chr9:15805946-15805584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 95

               
               
               Conread position:89-469
               
               
               Cow position:chr9:5594480-5594847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:89-472
               
               
               Cow position:chr9:1949894-1950272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 79

               
               
               Conread position:89-472
               
               
               Cow position:chr9:4646348-4645984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:262
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):143, 75

               
               
               Conread position:89-472
               
               
               Cow position:chr9:8998326-8998705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 176

               
               
               Conread position:89-473
               
               
               Cow position:chr9:3387666-3388042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):299, 77

               
               
               Conread position:89-473
               
               
               Cow position:chr9:5433609-5433982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 174

               
               
               Conread position:89-473
               
               
               Cow position:chr9:9552067-9552436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):153, 0

               
               
               Conread position:89-473
               
               
               Cow position:chr9:13994143-13994539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 229

               
               
               Conread position:89-473
               
               
               Cow position:chr9:17411216-17410838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):144, 84

               
               
               Conread position:89-473
               
               
               Cow position:chr9:17928734-17929107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:263
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):81, 74

               
               
               Conread position:89-473
               
               
               Cow position:chr9:21030285-21030668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):172, 77

               
               
               Conread position:89-473
               
               
               Cow position:chr9:30402448-30402066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 173

               
               
               Conread position:89-473
               
               
               Cow position:chr9:35167153-35167524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):299, 77

               
               
               Conread position:89-473
               
               
               Cow position:chr9:36445597-36445972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 158

               
               
               Conread position:89-473
               
               
               Cow position:chr9:41789261-41789638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:267
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):305, 77

               
               
               Conread position:89-473
               
               
               Cow position:chr9:42446006-42445622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 171

               
               
               Conread position:89-473
               
               
               Cow position:chr9:43870952-43871323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 167

               
               
               Conread position:89-473
               
               
               Cow position:chr9:52407141-52407518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 77

               
               
               Conread position:89-473
               
               
               Cow position:chr9:59386792-59386429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 88

               
               
               Conread position:89-475
               
               
               Cow position:chr9:5227195-5226812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 43

               
               
               Conread position:89-478
               
               
               Cow position:chr9:1952293-1951914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:89-484
               
               
               Cow position:chr9:45756340-45756714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:270
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):75, 140

               
               
               Conread position:89-490
               
               
               Cow position:chr9:49983112-49982729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:91-387
               
               
               Cow position:chr9:55889793-55890075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):156, 15

               
               
               Conread position:91-467
               
               
               Cow position:chr9:19714059-19714415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):291, 75

               
               
               Conread position:92-312
               
               
               Cow position:chr9:49416967-49417182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:92-347
               
               
               Cow position:chr9:6338773-6339028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:180
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):74, 87

               
               
               Conread position:92-347
               
               
               Cow position:chr9:52619630-52619878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):122, 23

               
               
               Conread position:92-385
               
               
               Cow position:chr9:9753411-9753132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):162, 71

               
               
               Conread position:92-417
               
               
               Cow position:chr9:25546620-25546927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:225
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:92-469
               
               
               Cow position:chr9:34697319-34696949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):162, 8

               
               
               Conread position:92-469
               
               
               Cow position:chr9:55075148-55074788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):174, 20

               
               
               Conread position:92-473
               
               
               Cow position:chr9:50081060-50080695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:93-473
               
               
               Cow position:chr9:18215929-18215562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):161, 80

               
               
               Conread position:94-359
               
               
               Cow position:chr9:50703129-50702875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:189
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:95-320
               
               
               Cow position:chr9:50543443-50543221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):91, 166

               
               
               Conread position:95-323
               
               
               Cow position:chr9:47500229-47500001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):61, 66

               
               
               Conread position:95-343
               
               
               Cow position:chr9:42062082-42062338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):46, 84

               
               
               Conread position:95-365
               
               
               Cow position:chr9:6839976-6840254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:198
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):71, 261

               
               
               Conread position:95-388
               
               
               Cow position:chr9:43207391-43207113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:95-398
               
               
               Cow position:chr9:8288598-8288894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:221
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):81, 69

               
               
               Conread position:95-469
               
               
               Cow position:chr9:8534707-8534339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):161, 88

               
               
               Conread position:95-472
               
               
               Cow position:chr9:47906298-47905930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:270
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):69, 116

               
               
               Conread position:95-473
               
               
               Cow position:chr9:5509707-5510075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:95-473
               
               
               Cow position:chr9:29185154-29184786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 167

               
               
               Conread position:95-473
               
               
               Cow position:chr9:64050578-64050209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 62

               
               
               Conread position:96-388
               
               
               Cow position:chr9:64637536-64637811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:97-329
               
               
               Cow position:chr9:8919976-8920206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:169
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):73, 13

               
               
               Conread position:97-417
               
               
               Cow position:chr9:49764642-49764951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:98-413
               
               
               Cow position:chr9:34468592-34468302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:98-473
               
               
               Cow position:chr9:39681325-39681709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):133, 78

               
               
               Conread position:100-344
               
               
               Cow position:chr9:42264202-42264444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):142, 66

               
               
               Conread position:100-473
               
               
               Cow position:chr9:24997531-24997153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):183, 64

               
               
               Conread position:103-314
               
               
               Cow position:chr9:40543334-40543125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:107-367
               
               
               Cow position:chr9:35360109-35359857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:185
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):212, 59

               
               
               Conread position:112-403
               
               
               Cow position:chr9:5531942-5532233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 69

               
               
               Conread position:112-417
               
               
               Cow position:chr9:5327258-5327546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:219
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:112-473
               
               
               Cow position:chr9:61997598-61997245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 65

               
               
               Conread position:115-397
               
               
               Cow position:chr9:40105470-40105751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):148, 61

               
               
               Conread position:115-401
               
               
               Cow position:chr9:30749586-30749306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:207
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):51, 45

               
               
               Conread position:130-473
               
               
               Cow position:chr9:18002934-18002601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:130-473
               
               
               Cow position:chr9:34000602-34000261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):135, 43

               
               
               Conread position:155-473
               
               
               Cow position:chr9:42998428-42998111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 106

               
               
               Conread position:176-473
               
               
               Cow position:chr9:52505247-52504953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 7

               
               
               Conread position:178-417
               
               
               Cow position:chr9:58673803-58674036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):129, 5

               
               
               Conread position:178-473
               
               
               Cow position:chr9:8997614-8997907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:179-347
               
               
               Cow position:chr9:43623322-43623486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:190-469
               
               
               Cow position:chr9:19539165-19539444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 158

               
               
               Conread position:194-473
               
               
               Cow position:chr9:38184405-38184127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):153, 0

               
               
               Conread position:210-473
               
               
               Cow position:chr9:31662559-31662817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):137, 0

               
               
               Conread position:223-410
               
               
               Cow position:chr9:17634729-17634543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:226-473
               
               
               Cow position:chr9:37510126-37510368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 9

               
               
               Conread position:231-472
               
               
               Cow position:chr9:8418265-8418027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:187
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 0

               
               
               Conread position:247-473
               
               
               Cow position:chr9:20237877-20237657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):117, 60

               
               
               Conread position:247-473
               
               
               Cow position:chr9:25969475-25969697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:176
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):142, 68

               
               
               Conread position:88-309
               
               
               Cow position:chrX:36393260-36393483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:151
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):6, 28

               
               
               Conread position:88-432
               
               
               Cow position:chrX:28878094-28878416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:246
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):102, 76

               
               
               Conread position:88-435
               
               
               Cow position:chrX:27508942-27509277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 75

               
               
               Conread position:88-473
               
               
               Cow position:chrX:34565366-34565005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:273
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):75, 168

               
               
               Conread position:89-297
               
               
               Cow position:chrX:27945975-27946183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:136
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:89-309
               
               
               Cow position:chrX:7710460-7710679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):168, 75

               
               
               Conread position:89-313
               
               
               Cow position:chrX:27685327-27685107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:89-315
               
               
               Cow position:chrX:29723819-29723599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:164
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):102, 61

               
               
               Conread position:89-321
               
               
               Cow position:chrX:27228205-27227974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):168, 75

               
               
               Conread position:89-321
               
               
               Cow position:chrX:29680182-29680409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:167
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):230, 85

               
               
               Conread position:89-340
               
               
               Cow position:chrX:41068804-41068564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):76, 177

               
               
               Conread position:89-345
               
               
               Cow position:chrX:46433570-46433314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):120, 75

               
               
               Conread position:89-347
               
               
               Cow position:chrX:36061239-36060981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:89-348
               
               
               Cow position:chrX:22921400-22921142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):159, 106

               
               
               Conread position:89-366
               
               
               Cow position:chrX:42235445-42235722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:189
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):83, 169

               
               
               Conread position:89-378
               
               
               Cow position:chrX:43779768-43780053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:202
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):207, 71

               
               
               Conread position:89-379
               
               
               Cow position:chrX:1499744-1499468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:89-383
               
               
               Cow position:chrX:29121126-29120851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:206
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:89-387
               
               
               Cow position:chrX:29601749-29602040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 86

               
               
               Conread position:89-399
               
               
               Cow position:chrX:11633761-11633457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:215
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):171, 0

               
               
               Conread position:89-401
               
               
               Cow position:chrX:6488655-6488363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):128, 17

               
               
               Conread position:89-404
               
               
               Cow position:chrX:7722067-7721758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 17

               
               
               Conread position:89-405
               
               
               Cow position:chrX:11856509-11856202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 0

               
               
               Conread position:89-410
               
               
               Cow position:chrX:6278419-6278738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 75

               
               
               Conread position:89-414
               
               
               Cow position:chrX:15815163-15814861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:224
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:89-417
               
               
               Cow position:chrX:9360966-9360644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):133, 75

               
               
               Conread position:89-417
               
               
               Cow position:chrX:34543863-34543548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 113

               
               
               Conread position:89-431
               
               
               Cow position:chrX:17542039-17541711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:237
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):139, 0

               
               
               Conread position:89-461
               
               
               Cow position:chrX:2467963-2467597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:89-468
               
               
               Cow position:chrX:4268985-4269357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 85

               
               
               Conread position:89-469
               
               
               Cow position:chrX:5872396-5872025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):167, 76

               
               
               Conread position:89-472
               
               
               Cow position:chrX:20697530-20697897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):198, 77

               
               
               Conread position:89-472
               
               
               Cow position:chrX:26625592-26625979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 22

               
               
               Conread position:89-473
               
               
               Cow position:chrX:161491-161133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:264
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):202, 87

               
               
               Conread position:89-473
               
               
               Cow position:chrX:1175903-1176269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:89-473
               
               
               Cow position:chrX:10411907-10412281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:89-473
               
               
               Cow position:chrX:11082543-11082909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):374, 120

               
               
               Conread position:89-473
               
               
               Cow position:chrX:12290798-12290442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:266
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:89-473
               
               
               Cow position:chrX:13868781-13868402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):174, 53

               
               
               Conread position:89-473
               
               
               Cow position:chrX:15147118-15147479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:89-473
               
               
               Cow position:chrX:29289657-29289281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:89-473
               
               
               Cow position:chrX:34402079-34401703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 61

               
               
               Conread position:89-473
               
               
               Cow position:chrX:34502999-34502628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:89-473
               
               
               Cow position:chrX:37489798-37489423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:277
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):319, 75

               
               
               Conread position:89-473
               
               
               Cow position:chrX:38964187-38963816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 77

               
               
               Conread position:89-473
               
               
               Cow position:chrX:40826672-40827042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):188, 72

               
               
               Conread position:89-473
               
               
               Cow position:chrX:42247103-42247471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 164

               
               
               Conread position:89-473
               
               
               Cow position:chrX:42507569-42507939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):158, 75

               
               
               Conread position:89-473
               
               
               Cow position:chrX:44054881-44054510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):175, 78

               
               
               Conread position:89-473
               
               
               Cow position:chrX:46532416-46532815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 264

               
               
               Conread position:89-478
               
               
               Cow position:chrX:30133239-30133624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 77

               
               
               Conread position:89-483
               
               
               Cow position:chrX:31948856-31949236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):141, 0

               
               
               Conread position:90-473
               
               
               Cow position:chrX:28632407-28632773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:253
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:91-417
               
               
               Cow position:chrX:8517949-8517637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):52, 41

               
               
               Conread position:91-459
               
               
               Cow position:chrX:31442752-31443102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:91-473
               
               
               Cow position:chrX:44192370-44192736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 86

               
               
               Conread position:92-258
               
               
               Cow position:chrX:40680690-40680523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:92-295
               
               
               Cow position:chrX:40320482-40320283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):64, 69

               
               
               Conread position:92-303
               
               
               Cow position:chrX:45875468-45875261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):100, 74

               
               
               Conread position:92-317
               
               
               Cow position:chrX:9365600-9365818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:92-330
               
               
               Cow position:chrX:21327989-21327750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):42, 191

               
               
               Conread position:92-346
               
               
               Cow position:chrX:31252484-31252248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:92-360
               
               
               Cow position:chrX:47165810-47166067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:187
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:92-435
               
               
               Cow position:chrX:48652645-48652988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:230
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):280, 91

               
               
               Conread position:92-446
               
               
               Cow position:chrX:45403749-45404102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 68

               
               
               Conread position:92-464
               
               
               Cow position:chrX:46722658-46723027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 88

               
               
               Conread position:92-465
               
               
               Cow position:chrX:48194959-48195328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 92

               
               
               Conread position:92-467
               
               
               Cow position:chrX:47344372-47344005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 85

               
               
               Conread position:92-473
               
               
               Cow position:chrX:27705662-27705298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 58

               
               
               Conread position:94-473
               
               
               Cow position:chrX:28846819-28847171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:95-308
               
               
               Cow position:chrX:41027232-41027022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):77, 165

               
               
               Conread position:95-346
               
               
               Cow position:chrX:35885654-35885899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):84, 79

               
               
               Conread position:95-347
               
               
               Cow position:chrX:6407617-6407378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:190
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):69, 44

               
               
               Conread position:95-384
               
               
               Cow position:chrX:842230-841952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):142, 59

               
               
               Conread position:95-385
               
               
               Cow position:chrX:3580017-3579737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:209
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):151, 78

               
               
               Conread position:95-416
               
               
               Cow position:chrX:42492450-42492748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:234
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:95-417
               
               
               Cow position:chrX:38935352-38935042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:230
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):30, 35

               
               
               Conread position:95-463
               
               
               Cow position:chrX:33640048-33639680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 73

               
               
               Conread position:95-473
               
               
               Cow position:chrX:21064356-21063991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 71

               
               
               Conread position:95-473
               
               
               Cow position:chrX:43527581-43527208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):136, 65

               
               
               Conread position:95-478
               
               
               Cow position:chrX:5638096-5638468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):243, 70

               
               
               Conread position:96-473
               
               
               Cow position:chrX:10831418-10831807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 160

               
               
               Conread position:97-473
               
               
               Cow position:chrX:31250459-31250096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):339, 86

               
               
               Conread position:107-416
               
               
               Cow position:chrX:41166901-41167202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 68

               
               
               Conread position:111-417
               
               
               Cow position:chrX:9954196-9953902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:112-312
               
               
               Cow position:chrX:18204411-18204602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:112-446
               
               
               Cow position:chrX:12018348-12018007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 65

               
               
               Conread position:112-459
               
               
               Cow position:chrX:37836642-37836308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):277, 52

               
               
               Conread position:112-473
               
               
               Cow position:chrX:7351356-7351007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:112-473
               
               
               Cow position:chrX:7718905-7718561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 54

               
               
               Conread position:115-404
               
               
               Cow position:chrX:13382384-13382098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:205
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):268, 51

               
               
               Conread position:115-472
               
               
               Cow position:chrX:12309333-12309682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):248, 59

               
               
               Conread position:115-473
               
               
               Cow position:chrX:28845886-28845549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:258
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):75, 62

               
               
               Conread position:118-438
               
               
               Cow position:chrX:15139497-15139806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:230
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):268, 55

               
               
               Conread position:129-385
               
               
               Cow position:chrX:26286018-26285772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):51, 11

               
               
               Conread position:130-345
               
               
               Cow position:chrX:9770640-9770853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):166, 13

               
               
               Conread position:130-473
               
               
               Cow position:chrX:41790405-41790735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:242
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):41, 57

               
               
               Conread position:152-420
               
               
               Cow position:chrX:35284641-35284375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):23, 115

               
               
               Conread position:165-359
               
               
               Cow position:chrX:7336833-7336645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):173, 29

               
               
               Conread position:178-445
               
               
               Cow position:chrX:40183352-40183617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:178-473
               
               
               Cow position:chrX:15485633-15485920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):192, 8

               
               
               Conread position:179-370
               
               
               Cow position:chrX:37541115-37540932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:183-435
               
               
               Cow position:chrX:32020132-32020379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 0

               
               
               Conread position:186-409
               
               
               Cow position:chrX:2648369-2648581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:190-468
               
               
               Cow position:chrX:44834830-44835106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:192
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:207-384
               
               
               Cow position:chrX:16996466-16996300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):7, 43

               
               
               Conread position:217-413
               
               
               Cow position:chrX:27514828-27514633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):57, 16

               
               
               Conread position:252-417
               
               
               Cow position:chrX:8492833-8492997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):95, 0
Conread position:	45-473
Cow position:	chr1:44769010-44769424 (view UCSC Genome Browser custom track)
Alignm length:	432
Alignm identity:	299
Alignm E-value:	0
Alignm gaps (pig, cow):	132, 28
Conread position:	83-473
Cow position:	chr1:72011748-72012121 (view UCSC Genome Browser custom track)
Alignm length:	397
Alignm identity:	273
Alignm E-value:	9.99967e-42
Alignm gaps (pig, cow):	7, 90
Conread position:	88-430
Cow position:	chr1:4032691-4032364 (view UCSC Genome Browser custom track)
Alignm length:	344
Alignm identity:	241
Alignm E-value:	0
Alignm gaps (pig, cow):	76, 224
Conread position:	88-473
Cow position:	chr1:53308330-53308707 (view UCSC Genome Browser custom track)
Alignm length:	390
Alignm identity:	280
Alignm E-value:	0
Alignm gaps (pig, cow):	76, 123
Conread position:	89-273
Cow position:	chr1:72813674-72813492 (view UCSC Genome Browser custom track)
Alignm length:	185
Alignm identity:	127
Alignm E-value:	2e-21
Alignm gaps (pig, cow):	61, 0
Conread position:	89-280
Cow position:	chr1:100569214-100569024 (view UCSC Genome Browser custom track)
Alignm length:	192
Alignm identity:	129
Alignm E-value:	5e-21
Alignm gaps (pig, cow):	83, 0
Conread position:	89-309
Cow position:	chr1:33409567-33409784 (view UCSC Genome Browser custom track)
Alignm length:	221
Alignm identity:	147
Alignm E-value:	6e-23
Alignm gaps (pig, cow):	71, 0
Conread position:	89-320
Cow position:	chr1:74927942-74927713 (view UCSC Genome Browser custom track)
Alignm length:	233
Alignm identity:	158
Alignm E-value:	9e-27
Alignm gaps (pig, cow):	173, 85
Conread position:	89-321
Cow position:	chr1:75142055-75141834 (view UCSC Genome Browser custom track)
Alignm length:	233
Alignm identity:	165
Alignm E-value:	4e-29
Alignm gaps (pig, cow):	85, 0
Conread position:	89-337
Cow position:	chr1:65904940-65905188 (view UCSC Genome Browser custom track)
Alignm length:	253
Alignm identity:	166
Alignm E-value:	2e-22
Alignm gaps (pig, cow):	77, 105
Conread position:	89-340
Cow position:	chr1:73682184-73682420 (view UCSC Genome Browser custom track)
Alignm length:	252
Alignm identity:	171
Alignm E-value:	6e-24
Alignm gaps (pig, cow):	84, 0
Conread position:	89-343
Cow position:	chr1:42398133-42398383 (view UCSC Genome Browser custom track)
Alignm length:	256
Alignm identity:	177
Alignm E-value:	5e-33
Alignm gaps (pig, cow):	67, 92
Conread position:	89-345
Cow position:	chr1:54156677-54156929 (view UCSC Genome Browser custom track)
Alignm length:	260
Alignm identity:	185
Alignm E-value:	7e-35
Alignm gaps (pig, cow):	167, 12
Conread position:	89-347
Cow position:	chr1:6788225-6788480 (view UCSC Genome Browser custom track)
Alignm length:	260
Alignm identity:	184
Alignm E-value:	9e-38
Alignm gaps (pig, cow):	74, 88
Conread position:	89-360
Cow position:	chr1:63138899-63138636 (view UCSC Genome Browser custom track)
Alignm length:	272
Alignm identity:	186
Alignm E-value:	5e-32
Alignm gaps (pig, cow):	94, 0
Conread position:	89-366
Cow position:	chr1:86482962-86482695 (view UCSC Genome Browser custom track)
Alignm length:	280
Alignm identity:	193
Alignm E-value:	1e-30
Alignm gaps (pig, cow):	61, 90
Conread position:	89-367
Cow position:	chr1:85867647-85867384 (view UCSC Genome Browser custom track)
Alignm length:	281
Alignm identity:	193
Alignm E-value:	3e-27
Alignm gaps (pig, cow):	195, 85
Conread position:	89-372
Cow position:	chr1:98311128-98310846 (view UCSC Genome Browser custom track)
Alignm length:	286
Alignm identity:	200
Alignm E-value:	4.00001e-40
Alignm gaps (pig, cow):	182, 77
Conread position:	89-381
Cow position:	chr1:70422362-70422077 (view UCSC Genome Browser custom track)
Alignm length:	294
Alignm identity:	192
Alignm E-value:	8e-26
Alignm gaps (pig, cow):	96, 61
Conread position:	89-386
Cow position:	chr1:24728782-24729068 (view UCSC Genome Browser custom track)
Alignm length:	299
Alignm identity:	200
Alignm E-value:	1e-28
Alignm gaps (pig, cow):	67, 34