Cow genome map

Conread name: Tra1-TCH01A060069

Conread position: 40-405
Cow position: chr10:24977752-24977373 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 310

Conread position: 64-405
Cow position: chr10:64302725-64302370 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 113

Conread position: 76-335
Cow position: chr10:60205671-60205403 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 183
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 55, 33

Conread position: 76-405
Cow position: chr10:6260357-6260020 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 103

Conread position: 90-245
Cow position: chr10:21076832-21076982 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 123
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 39, 89

Conread position: 98-325
Cow position: chr10:64288603-64288391 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 162
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 33, 81

Conread position: 211-405
Cow position: chr10:11820951-11821153 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 158
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 79, 24

Conread position: 229-382
Cow position: chr10:39880153-39879992 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 119
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 42, 0

Conread position: 34-338
Cow position: chr11:44231131-44231443 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 225
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 22, 100

Conread position: 34-405
Cow position: chr11:36762096-36762496 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 150

Conread position: 45-418
Cow position: chr11:18073368-18072984 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 269
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 32, 9

Conread position: 64-261
Cow position: chr11:13163002-13163200 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 153
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 15, 70

Conread position: 64-405
Cow position: chr11:13067008-13066655 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 70

Conread position: 65-405
Cow position: chr11:36713439-36713088 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 42

Conread position: 76-263
Cow position: chr11:30187342-30187532 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 144
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 19, 186

Conread position: 76-383
Cow position: chr11:30205607-30205927 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 222
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 53, 86

Conread position: 84-368
Cow position: chr12:17976829-17977121 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 206
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 45, 110

Conread position: 18-332
Cow position: chr13:21131388-21131709 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 153

Conread position: 57-245
Cow position: chr13:30261849-30262048 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 150
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 22, 62

Conread position: 65-405
Cow position: chr13:34048362-34048721 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 100

Conread position: 91-405
Cow position: chr13:22185464-22185139 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 96

Conread position: 144-405
Cow position: chr13:31556901-31556619 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 207
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 145, 34

Conread position: 33-405
Cow position: chr14:34044074-34043670 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 283
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 36, 202

Conread position: 38-405
Cow position: chr14:38816242-38815836 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 280
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 20, 146

Conread position: 40-247
Cow position: chr14:42122991-42122786 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 167
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 93, 45

Conread position: 64-366
Cow position: chr14:30706688-30706379 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 217
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 27, 145

Conread position: 76-375
Cow position: chr14:46513170-46513454 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 199
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 53, 58

Conread position: 90-401
Cow position: chr14:33487587-33487887 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 211
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 39, 12

Conread position: 105-405
Cow position: chr14:9516168-9515849 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 231
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 24, 0

Conread position: 38-333
Cow position: chr15:1254447-1254737 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 206
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 36, 18

Conread position: 64-405
Cow position: chr15:30810612-30810958 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 248

Conread position: 72-405
Cow position: chr15:20357290-20356923 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 260
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 7, 92

Conread position: 102-405
Cow position: chr15:498409-498729 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 10

Conread position: 64-394
Cow position: chr16:25170600-25170949 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 115

Conread position: 65-406
Cow position: chr16:28438139-28437784 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 245
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 14, 114

Conread position: 84-227
Cow position: chr16:41757244-41757105 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 114
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 45, 29

Conread position: 96-440
Cow position: chr16:29091006-29090657 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 249
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 68, 40

Conread position: 27-368
Cow position: chr17:15384067-15384409 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 29

Conread position: 34-252
Cow position: chr18:9186375-9186159 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 163
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 45, 22

Conread position: 40-360
Cow position: chr18:4885167-4884836 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 17

Conread position: 38-366
Cow position: chr19:32183053-32182716 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 231
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 29, 148

Conread position: 96-265
Cow position: chr19:7449531-7449369 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 132
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 33, 53

Conread position: 27-405
Cow position: chr20:18325195-18324801 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 265
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 52, 37

Conread position: 38-375
Cow position: chr20:41720564-41720902 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 235
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 41, 7

Conread position: 38-404
Cow position: chr21:21517653-21518011 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 240
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 29, 134

Conread position: 97-405
Cow position: chr21:37292737-37293064 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 5

Conread position: 38-404
Cow position: chr22:298007-297625 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 254
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 28, 0

Conread position: 40-405
Cow position: chr22:36580869-36580481 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 163

Conread position: 40-405
Cow position: chr22:36591508-36591124 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 290
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 31, 125

Conread position: 44-207
Cow position: chr22:36552802-36552633 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 125
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 26, 140

Conread position: 74-403
Cow position: chr22:8875578-8875921 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 18

Conread position: 84-407
Cow position: chr22:292493-292163 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 180

Conread position: 95-405
Cow position: chr22:8148463-8148158 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 216
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 38, 64

Conread position: 199-405
Cow position: chr22:36552352-36552136 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 169
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 96, 59

Conread position: 37-293
Cow position: chr23:13509365-13509618 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 25

Conread position: 40-405
Cow position: chr23:26836584-26836984 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 0

Conread position: 57-233
Cow position: chr23:6216930-6217114 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 135
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 22, 0

Conread position: 38-371
Cow position: chr24:14872971-14872626 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 97

Conread position: 38-405
Cow position: chr24:6048611-6048996 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 271
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 91, 38

Conread position: 38-386
Cow position: chr25:3378371-3378033 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 244
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 41, 26

Conread position: 108-355
Cow position: chr27:6013780-6014024 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 179
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 47, 10

Conread position: 34-383
Cow position: chr28:10230262-10229898 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 255
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 21, 228

Conread position: 43-402
Cow position: chr28:5800969-5801322 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 248
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 36, 21

Conread position: 43-405
Cow position: chr28:29436891-29436500 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 74

Conread position: 40-405
Cow position: chr29:16016827-16016448 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 273
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 37, 17

Conread position: 64-398
Cow position: chr29:8062523-8062182 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 241
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 15, 100

Conread position: 38-371
Cow position: chr7:67812555-67812889 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 222
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 91, 98

Conread position: 38-386
Cow position: chr7:57564964-57564619 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 235
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 47, 18

Conread position: 38-405
Cow position: chr7:26851672-26852042 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 34

Conread position: 39-429
Cow position: chr7:30302596-30302998 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 66

Conread position: 61-405
Cow position: chr7:41876253-41875891 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 54

Conread position: 120-386
Cow position: chr7:19048471-19048198 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 199
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 59, 41

Conread position: 38-222
Cow position: chr8:51328127-51328323 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 147
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 33, 0

Conread position: 38-384
Cow position: chr8:16084914-16085269 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 252
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 80, 38

Conread position: 66-405
Cow position: chr8:38578168-38577817 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 97

Conread position: 90-405
Cow position: chr8:38586064-38585747 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 60

Conread position: 109-405
Cow position: chr8:24874878-24874555 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 241
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 20, 51

Conread position: 34-405
Cow position: chr9:3393787-3393403 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 99

Conread position: 38-386
Cow position: chr9:64159351-64159699 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 246
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 28, 147

Conread position: 38-403
Cow position: chr9:29328496-29328873 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 275
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 38, 18

Conread position: 64-384
Cow position: chr9:59511225-59511569 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 151

Conread position: 64-405
Cow position: chr9:3726532-3726892 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 24

Conread position: 25-404
Cow position: chrX:13417687-13417305 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 262
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 17, 34

Conread position: 34-404
Cow position: chrX:26427915-26427524 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 268
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 41, 22

Conread position: 37-206
Cow position: chrX:6251137-6250966 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 133
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 37, 5

Conread position: 38-371
Cow position: chrX:19873544-19873879 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 229
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 134, 18

Conread position: 40-404
Cow position: chrX:30132677-30132297 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 249
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 29, 16

Conread position: 57-366
Cow position: chrX:10417553-10417236 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 15

Conread position: 65-183
Cow position: chrX:28875247-28875127 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 95
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 32, 0

Conread position: 96-405
Cow position: chrX:24113024-24112705 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 227
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 183, 34

Conread position: 120-405
Cow position: chrX:29814655-29814975 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 240
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 14, 270

Conread position: 171-282
Cow position: chrX:28874899-28874789 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 91
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 17, 0

Conread position: 187-405
Cow position: chrX:41889071-41888835 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 174
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 92, 0

Conread position: 196-405
Cow position: chrX:6250543-6250308 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 173
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 83, 0